Wall clock time and date at job start Tue Mar 31 2020 14:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48491 * 109.47514 * 239.99990 * 3 2 1 5 5 H 1.48506 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47135 * 119.99406 * 3 2 1 7 7 C 1.37880 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99814 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47215 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.47201 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.53936 * 68.37718 * 11 10 9 13 13 O 1.42095 * 110.54104 * 291.62678 * 11 10 9 14 14 N 1.65598 * 104.44825 * 179.97438 * 11 10 9 15 15 C 1.46423 * 120.57026 * 89.99983 * 14 11 10 16 16 C 1.52918 * 109.86896 * 222.52539 * 15 14 11 17 17 C 1.50585 * 110.11980 * 43.68116 * 16 15 14 18 18 O 1.21302 * 119.80328 * 104.42206 * 17 16 15 19 19 N 1.35072 * 120.39592 * 284.39655 * 17 16 15 20 20 C 1.40036 * 120.46122 * 4.67062 * 19 17 16 21 21 C 1.38462 * 120.85996 * 228.51895 * 20 19 17 22 22 C 1.38309 * 119.84828 * 181.45620 * 21 20 19 23 23 C 1.38289 * 120.25841 * 0.28728 * 22 21 20 24 24 C 1.38307 * 120.25230 * 359.45120 * 23 22 21 25 25 C 1.38512 * 119.82990 * 0.17974 * 24 23 22 26 26 H 0.96998 * 120.00218 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47389 * 60.00362 * 9 7 2 28 28 H 1.09001 * 109.47379 * 300.00006 * 9 7 2 29 29 H 1.09000 * 109.46589 * 59.99944 * 10 9 7 30 30 H 1.09001 * 109.47011 * 300.00303 * 10 9 7 31 31 H 1.09003 * 109.40196 * 102.40753 * 15 14 11 32 32 H 1.08996 * 109.40686 * 342.64693 * 15 14 11 33 33 H 1.08997 * 109.36409 * 283.48313 * 16 15 14 34 34 H 1.09000 * 109.36203 * 163.87880 * 16 15 14 35 35 H 0.97005 * 119.76754 * 184.64045 * 19 17 16 36 36 H 1.08003 * 120.07271 * 1.48609 * 21 20 19 37 37 H 1.08004 * 119.87247 * 180.25794 * 22 21 20 38 38 H 1.07997 * 119.87366 * 179.47989 * 23 22 21 39 39 H 1.08002 * 120.08066 * 179.89721 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6640 -5.4200 -1.2355 13 8 0.6648 -5.4193 1.2385 14 7 2.5205 -6.3927 0.0005 15 6 3.0531 -6.9141 1.2609 16 6 4.5739 -7.0443 1.1682 17 6 5.1596 -5.8209 0.5141 18 8 5.7280 -4.9895 1.1901 19 7 5.0563 -5.6441 -0.8210 20 6 4.3204 -6.5443 -1.6015 21 6 4.8525 -7.0761 -2.7640 22 6 4.0960 -7.9400 -3.5349 23 6 2.8087 -8.2699 -3.1522 24 6 2.2718 -7.7472 -1.9897 25 6 3.0258 -6.8873 -1.2084 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8894 31 1 2.6173 -7.8931 1.4607 32 1 2.7967 -6.2325 2.0719 33 1 4.8259 -7.9253 0.5780 34 1 4.9891 -7.1521 2.1703 35 1 5.4945 -4.8880 -1.2420 36 1 5.8561 -6.8172 -3.0677 37 1 4.5121 -8.3584 -4.4395 38 1 2.2205 -8.9385 -3.7633 39 1 1.2655 -8.0053 -1.6944 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173160475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:07 Heat of formation + Delta-G solvation = -101.190478 kcal Electronic energy + Delta-G solvation = -26265.325316 eV Core-core repulsion = 22491.910888 eV Total energy + Delta-G solvation = -3773.414428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00425 -39.80193 -38.37400 -37.39903 -37.12516 -36.05995 -35.91092 -33.22941 -32.58302 -31.05127 -29.49303 -27.68596 -25.80003 -23.87624 -23.74874 -22.88625 -21.53425 -20.34215 -19.38420 -18.72463 -18.49160 -17.99439 -17.76419 -17.47171 -16.74874 -16.70986 -16.59118 -15.76540 -15.40183 -15.30830 -15.20435 -14.79574 -14.55165 -14.41509 -14.09301 -13.83249 -13.82926 -13.33909 -13.27698 -13.11295 -12.99525 -12.89801 -12.69320 -12.57271 -12.37121 -12.31088 -12.19536 -11.84993 -11.55959 -11.26019 -11.03752 -10.70026 -10.58817 -9.77050 -9.24844 -8.31780 -6.46393 -0.98339 0.13585 0.34711 1.35769 1.38466 1.39573 1.46255 1.48259 2.08109 2.33115 2.61399 2.67345 2.99234 3.01069 3.35630 3.57459 3.84466 3.90183 3.91948 3.94788 4.10004 4.21348 4.46004 4.47599 4.54416 4.58870 4.59375 4.68038 4.75622 4.95992 5.14184 5.15687 5.24069 5.32862 5.51758 5.60733 5.61311 5.70407 5.91746 5.99176 6.18250 6.65053 6.96835 7.23680 8.80288 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.004528 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.168123 B = 6181.772683 C = 6493.862289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.028 3.972 10 C -0.586 4.586 11 S 2.608 3.392 12 O -0.971 6.971 13 O -0.980 6.980 14 N -0.951 5.951 15 C 0.120 3.880 16 C -0.144 4.144 17 C 0.520 3.480 18 O -0.569 6.569 19 N -0.671 5.671 20 C 0.127 3.873 21 C -0.121 4.121 22 C -0.083 4.083 23 C -0.115 4.115 24 C -0.093 4.093 25 C 0.098 3.902 26 H 0.270 0.730 27 H 0.010 0.990 28 H 0.007 0.993 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.414 0.586 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.004 -21.932 -6.244 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.011 4.011 10 C -0.717 4.717 11 S 2.707 3.293 12 O -0.961 6.961 13 O -0.971 6.971 14 N -0.784 5.784 15 C -0.003 4.003 16 C -0.186 4.186 17 C 0.309 3.691 18 O -0.447 6.447 19 N -0.319 5.319 20 C 0.031 3.969 21 C -0.141 4.141 22 C -0.102 4.102 23 C -0.134 4.134 24 C -0.114 4.114 25 C 0.003 3.997 26 H 0.079 0.921 27 H 0.028 0.972 28 H 0.025 0.975 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.107 0.893 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.253 0.747 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.106 -21.692 -5.656 25.018 hybrid contribution 0.594 1.931 0.100 2.022 sum 11.700 -19.762 -5.556 23.628 Atomic orbital electron populations 1.70074 1.07917 1.28567 1.50400 1.26070 0.95893 1.03690 0.94080 0.85384 0.78246 0.77384 0.79379 1.18725 1.20256 1.19183 1.21384 0.93595 0.90927 1.52266 0.91506 1.18767 0.93238 0.92689 0.96395 1.30374 1.12748 1.17783 1.10833 1.05147 0.74930 0.75903 0.73297 1.93515 1.71719 1.85089 1.45752 1.93512 1.71919 1.85376 1.46262 1.55388 1.58482 1.53984 1.10512 1.21653 0.92234 1.03178 0.83257 1.22143 0.95393 0.96112 1.04912 1.21337 0.77921 0.88182 0.81653 1.90790 1.44680 1.46462 1.62774 1.43701 1.52234 1.28636 1.07317 1.18079 0.89878 0.94714 0.94231 1.21269 1.01572 0.97671 0.93577 1.21546 0.93340 0.95517 0.99753 1.21482 0.96399 1.00209 0.95292 1.21432 0.99858 0.94356 0.95782 1.17591 0.92543 1.01004 0.88552 0.92149 0.97167 0.97479 0.85867 0.85256 0.86345 0.89294 0.86030 0.84858 0.74685 0.82534 0.81498 0.82520 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 9 C 0.03 1.55 4.98 29.85 0.15 1.70 16 10 C -0.59 -25.01 6.12 71.98 0.44 -24.57 16 11 S 2.61 99.44 5.37 -56.49 -0.30 99.14 16 12 O -0.97 -40.74 16.53 -127.65 -2.11 -42.85 16 13 O -0.98 -41.83 16.89 -127.65 -2.16 -43.99 16 14 N -0.95 -25.94 2.55 -339.15 -0.86 -26.81 16 15 C 0.12 2.55 6.08 86.37 0.53 3.07 16 16 C -0.14 -2.55 5.46 29.78 0.16 -2.39 16 17 C 0.52 13.20 7.01 87.57 0.61 13.81 16 18 O -0.57 -19.40 17.92 -3.10 -0.06 -19.45 16 19 N -0.67 -14.81 5.25 -302.91 -1.59 -16.40 16 20 C 0.13 2.52 5.56 38.21 0.21 2.73 16 21 C -0.12 -1.61 9.99 22.34 0.22 -1.38 16 22 C -0.08 -0.89 10.04 22.30 0.22 -0.66 16 23 C -0.11 -1.60 10.04 22.30 0.22 -1.38 16 24 C -0.09 -1.95 9.07 22.35 0.20 -1.75 16 25 C 0.10 2.30 4.57 38.22 0.17 2.48 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.12 5.08 8.14 -2.39 -0.02 5.06 16 30 H 0.13 5.08 8.14 -2.39 -0.02 5.06 16 31 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.09 7.38 -2.39 -0.02 2.08 16 33 H 0.12 1.52 7.64 -2.39 -0.02 1.51 16 34 H 0.13 1.89 8.13 -2.39 -0.02 1.87 16 35 H 0.41 8.65 8.92 -92.70 -0.83 7.82 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 38 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.13 2.80 8.04 -2.91 -0.02 2.77 16 Total: -1.00 -82.51 343.17 -0.67 -83.18 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.25 Total: 16.98 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 3.85 Total: -39.31 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -2.17 Total: -100.58 kcal Atomic # 8 Polarization: -101.97 SS G_CDS: -4.32 Total: -106.29 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 99.44 SS G_CDS: -0.30 Total: 99.14 kcal Total: -82.51 -0.67 -83.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173160475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.013 kcal (2) G-P(sol) polarization free energy of solvation -82.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds