Wall clock time and date at job start Tue Mar 31 2020 14:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 110.54140 * 2 1 4 4 O 1.42095 * 110.54392 * 223.24855 * 2 1 3 5 5 C 1.76198 * 104.44988 * 111.62505 * 2 1 3 6 6 C 1.38376 * 119.85190 * 270.30068 * 5 2 1 7 7 C 1.37938 * 120.15316 * 180.25977 * 6 5 2 8 8 C 1.39627 * 119.84354 * 359.43900 * 7 6 5 9 9 C 1.47732 * 120.14853 * 180.25695 * 8 7 6 10 10 O 1.21471 * 119.99593 * 354.82770 * 9 8 7 11 11 O 1.34705 * 120.00297 * 174.82422 * 9 8 7 12 12 C 1.45203 * 117.00438 * 184.88750 * 11 9 8 13 13 C 1.52996 * 109.47316 * 183.71381 * 12 11 9 14 14 C 1.50702 * 115.54977 * 306.32423 * 13 12 11 15 15 H 1.08000 * 119.99592 * 144.82937 * 14 13 12 16 16 C 1.37879 * 120.00147 * 324.82473 * 14 13 12 17 17 N 1.31517 * 120.00048 * 345.01376 * 16 14 13 18 18 Si 1.86790 * 120.00165 * 165.01289 * 16 14 13 19 19 H 1.48503 * 109.47320 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47349 * 119.99920 * 18 16 14 21 21 H 1.48503 * 109.47454 * 239.99874 * 18 16 14 22 22 C 1.53002 * 117.49573 * 160.65605 * 13 12 11 23 23 C 1.52994 * 117.49800 * 91.99504 * 13 12 11 24 24 C 1.39628 * 119.70495 * 0.28088 * 8 7 6 25 25 C 1.37940 * 119.84781 * 359.97438 * 24 8 7 26 26 H 1.08998 * 109.47390 * 308.37598 * 1 2 3 27 27 H 1.08994 * 109.47271 * 68.37419 * 1 2 3 28 28 H 1.09003 * 109.46994 * 188.37593 * 1 2 3 29 29 H 1.07999 * 119.91947 * 359.97438 * 6 5 2 30 30 H 1.07998 * 120.07582 * 179.71814 * 7 6 5 31 31 H 1.08999 * 109.46563 * 303.71762 * 12 11 9 32 32 H 1.09002 * 109.46735 * 63.71314 * 12 11 9 33 33 H 0.96991 * 120.00214 * 185.03934 * 17 16 14 34 34 H 1.08994 * 117.50198 * 359.97438 * 22 13 12 35 35 H 1.09005 * 117.49425 * 145.02295 * 22 13 12 36 36 H 1.08997 * 117.50170 * 214.97392 * 23 13 12 37 37 H 1.08996 * 117.50301 * 359.97438 * 23 13 12 38 38 H 1.07999 * 120.07780 * 180.02562 * 24 8 7 39 39 H 1.07994 * 119.92923 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5861 6 6 2.4194 0.2405 2.6499 7 6 2.7688 -0.2445 3.8931 8 6 2.9438 -1.6172 4.0794 9 6 3.3124 -2.1444 5.4092 10 8 3.5558 -1.3785 6.3201 11 8 3.3785 -3.4745 5.6118 12 6 3.6395 -3.9227 6.9681 13 6 3.7705 -5.4469 6.9853 14 6 2.6198 -6.2051 6.3752 15 1 2.8034 -7.1216 5.8341 16 6 1.3327 -5.7288 6.5078 17 7 1.0648 -4.7966 7.3960 18 14 -0.0305 -6.4075 5.4262 19 1 0.5273 -7.4401 4.5162 20 1 -1.0826 -7.0166 6.2793 21 1 -0.6203 -5.3062 4.6235 22 6 4.4784 -6.0816 8.1840 23 6 5.1722 -6.0374 6.8203 24 6 2.7692 -2.4893 3.0030 25 6 2.4250 -1.9903 1.7640 26 1 -0.3634 0.6380 0.8056 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.2794 1.3016 2.5054 30 1 2.9023 0.4355 4.7214 31 1 4.5659 -3.4743 7.3269 32 1 2.8156 -3.6215 7.6151 33 1 0.1485 -4.5135 7.5406 34 1 4.8511 -5.4133 8.9602 35 1 4.1120 -7.0479 8.5311 36 1 5.2622 -6.9745 6.2708 37 1 6.0011 -5.3400 6.6990 38 1 2.9026 -3.5522 3.1404 39 1 2.2901 -2.6636 0.9304 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174745868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:52 Heat of formation + Delta-G solvation = -94.397662 kcal Electronic energy + Delta-G solvation = -24894.251662 eV Core-core repulsion = 21088.839042 eV Total energy + Delta-G solvation = -3805.412620 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.13043 -38.67145 -37.36201 -36.80345 -36.19690 -35.21257 -32.25369 -31.82231 -31.23066 -29.83749 -26.93988 -25.53599 -24.33593 -22.90532 -21.33348 -20.67440 -19.30750 -19.27303 -18.16527 -17.30690 -16.86673 -16.46573 -16.16058 -15.80274 -15.54578 -14.82778 -14.77809 -14.67728 -14.06025 -13.73535 -13.70030 -13.53688 -13.49128 -13.06954 -12.97763 -12.33926 -12.23817 -12.15300 -12.08777 -11.72132 -11.41170 -11.35622 -11.06443 -10.98402 -10.91055 -10.56719 -10.42609 -10.18014 -9.68875 -9.54988 -9.50904 -9.23351 -9.21143 -8.83972 -8.19326 -6.16904 -4.17059 -0.26134 0.29486 1.16030 2.51645 2.66617 3.17578 3.21669 3.27440 3.32018 3.51202 3.75997 3.83463 4.28141 4.42867 4.48983 4.68457 4.71525 4.82992 5.07299 5.15860 5.27027 5.29784 5.45077 5.48720 5.73664 5.89153 5.90977 5.96060 6.10973 6.22217 6.35779 6.51271 6.58244 6.60401 6.69986 6.88394 7.17814 7.26411 7.31005 7.79918 8.23702 8.37553 8.77270 9.41721 10.86591 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003572 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.385555 B = 7836.400691 C = 8668.552622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.503 3.497 3 O -0.938 6.938 4 O -0.936 6.936 5 C -0.643 4.643 6 C -0.039 4.039 7 C -0.083 4.083 8 C -0.054 4.054 9 C 0.493 3.507 10 O -0.514 6.514 11 O -0.316 6.316 12 C 0.115 3.885 13 C 0.047 3.953 14 C -0.484 4.484 15 H 0.064 0.936 16 C 0.076 3.924 17 N -0.881 5.881 18 Si 0.891 3.109 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.281 1.281 22 C -0.191 4.191 23 C -0.209 4.209 24 C -0.081 4.081 25 C -0.038 4.038 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.032 0.968 32 H 0.112 0.888 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.156 0.844 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 9.567 -12.147 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.682 3.318 3 O -0.935 6.935 4 O -0.933 6.933 5 C -0.729 4.729 6 C -0.058 4.058 7 C -0.102 4.102 8 C -0.056 4.056 9 C 0.337 3.663 10 O -0.406 6.406 11 O -0.230 6.230 12 C 0.042 3.958 13 C 0.047 3.953 14 C -0.521 4.521 15 H 0.082 0.918 16 C -0.127 4.127 17 N -0.518 5.518 18 Si 0.719 3.281 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.207 1.207 22 C -0.229 4.229 23 C -0.246 4.246 24 C -0.100 4.100 25 C -0.057 4.057 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.050 0.950 32 H 0.129 0.871 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.173 0.827 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.674 10.139 -12.461 16.151 hybrid contribution -1.159 -0.667 0.569 1.453 sum -2.833 9.473 -11.891 15.465 Atomic orbital electron populations 1.30219 1.25510 1.12400 1.11844 1.05117 0.77886 0.74593 0.74198 1.93587 1.77384 1.36486 1.86034 1.93595 1.77320 1.61572 1.60801 1.30719 1.17128 1.03128 1.21970 1.20839 0.94341 0.99584 0.91024 1.21406 0.96753 0.94077 0.97998 1.19751 0.99459 0.94198 0.92163 1.21033 0.74793 0.82702 0.87810 1.90773 1.46150 1.59273 1.44361 1.86545 1.79754 1.20774 1.35959 1.22880 1.00151 0.94342 0.78388 1.18871 0.90288 0.89320 0.96864 1.20440 0.89667 1.08150 1.33883 0.91767 1.24922 0.98660 0.94473 0.94640 1.69832 1.19676 1.30526 1.31794 0.86543 0.81642 0.78940 0.81005 1.19439 1.21057 1.20729 1.22973 1.06501 1.02476 0.90917 1.22978 0.97724 1.02641 1.01278 1.21811 0.95202 1.01570 0.91418 1.20970 0.93694 0.93089 0.97901 0.84850 0.85005 0.84746 0.83431 0.83603 0.94951 0.87052 0.92696 0.91449 0.89682 0.90206 0.91269 0.82681 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.06 10.80 101.05 1.09 -1.97 16 2 S 2.50 21.59 5.79 -107.50 -0.62 20.97 16 3 O -0.94 -10.68 17.12 -57.54 -0.99 -11.67 16 4 O -0.94 -10.99 17.11 -57.54 -0.98 -11.98 16 5 C -0.64 -7.01 5.66 -39.48 -0.22 -7.24 16 6 C -0.04 -0.44 9.45 -39.64 -0.37 -0.82 16 7 C -0.08 -1.15 9.60 -39.17 -0.38 -1.53 16 8 C -0.05 -0.90 5.87 -104.98 -0.62 -1.52 16 9 C 0.49 10.12 7.88 34.61 0.27 10.39 16 10 O -0.51 -11.37 16.08 -19.24 -0.31 -11.68 16 11 O -0.32 -7.17 9.13 -40.50 -0.37 -7.54 16 12 C 0.12 2.74 4.66 37.16 0.17 2.91 16 13 C 0.05 1.13 2.10 -155.66 -0.33 0.80 16 14 C -0.48 -12.61 8.75 -34.44 -0.30 -12.91 16 15 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16 16 C 0.08 1.98 5.12 -17.82 -0.09 1.89 16 17 N -0.88 -23.63 10.96 55.43 0.61 -23.02 16 18 Si 0.89 20.04 29.57 -169.99 -5.03 15.01 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.19 -4.15 9.96 -26.69 -0.27 -4.41 16 23 C -0.21 -4.39 9.92 -26.69 -0.26 -4.66 16 24 C -0.08 -1.20 9.62 -39.17 -0.38 -1.58 16 25 C -0.04 -0.46 9.45 -39.64 -0.37 -0.83 16 26 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.13 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.15 1.26 7.56 -52.49 -0.40 0.86 16 30 H 0.15 1.90 7.66 -52.49 -0.40 1.50 16 31 H 0.03 0.73 7.95 -51.93 -0.41 0.32 16 32 H 0.11 2.92 6.12 -51.93 -0.32 2.60 16 33 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.16 2.34 7.62 -52.49 -0.40 1.94 16 39 H 0.15 1.45 7.56 -52.49 -0.40 1.05 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -33.68 353.57 -9.25 -42.93 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.83 Total: 3.13 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -2.06 Total: -21.47 kcal Atomic # 7 Polarization: -23.63 SS G_CDS: 0.61 Total: -23.02 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -2.65 Total: -42.87 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 16 Polarization: 21.59 SS G_CDS: -0.62 Total: 20.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.68 -9.25 -42.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174745868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.469 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds