Wall clock time and date at job start Tue Mar 31 2020 13:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31597 * 122.23073 * 2 1 4 4 C 1.29941 * 117.13643 * 179.97438 * 3 2 1 5 5 N 1.38894 * 125.36335 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00231 * 179.97438 * 5 4 3 7 7 O 1.21288 * 119.99794 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00056 * 180.02562 * 6 5 4 9 9 H 1.09002 * 115.54811 * 29.32136 * 8 6 5 10 10 C 1.52999 * 117.49782 * 243.61744 * 8 6 5 11 11 C 1.52997 * 117.50001 * 174.99286 * 8 6 5 12 12 H 1.08995 * 117.50398 * 214.97644 * 11 8 6 13 13 C 1.53002 * 117.49773 * 359.97438 * 11 8 6 14 14 C 1.53001 * 117.49922 * 254.83378 * 13 11 8 15 15 C 1.53002 * 60.00054 * 252.50841 * 14 13 11 16 16 S 1.76137 * 109.27402 * 359.75680 * 4 3 2 17 17 C 1.34652 * 122.23286 * 179.97438 * 2 1 3 18 18 S 1.76208 * 125.92743 * 0.02562 * 17 2 1 19 19 C 1.76202 * 99.99628 * 179.97438 * 18 17 2 20 20 H 1.07997 * 120.00614 * 0.02562 * 19 18 17 21 21 C 1.38428 * 119.99683 * 179.97438 * 19 18 17 22 22 N 1.31813 * 119.99853 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00114 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47046 * 90.00018 * 23 21 19 25 25 H 1.48510 * 109.47121 * 209.99883 * 23 21 19 26 26 H 1.48494 * 109.47150 * 329.99397 * 23 21 19 27 27 H 1.08997 * 109.47259 * 270.02496 * 1 2 3 28 28 H 1.09004 * 109.47211 * 30.02393 * 1 2 3 29 29 H 1.09000 * 109.46652 * 150.02088 * 1 2 3 30 30 H 0.97009 * 119.99819 * 0.02562 * 5 4 3 31 31 H 1.09001 * 117.50146 * 359.97438 * 10 8 6 32 32 H 1.08996 * 117.50415 * 145.01839 * 10 8 6 33 33 H 1.09005 * 115.55125 * 40.53940 * 13 11 8 34 34 H 1.08997 * 117.49662 * 0.02562 * 14 13 11 35 35 H 1.09003 * 117.49920 * 145.01954 * 14 13 11 36 36 H 1.08994 * 117.49959 * 252.51075 * 15 14 13 37 37 H 1.08999 * 117.51695 * 107.47468 * 15 14 13 38 38 H 0.97007 * 119.99974 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9978 0.0005 5 7 4.4044 2.0546 0.0001 6 6 5.7298 1.8101 0.0012 7 8 6.1355 0.6670 0.0022 8 6 6.7076 2.9567 0.0014 9 1 6.3598 3.8711 0.4822 10 6 7.6258 3.1023 -1.2138 11 6 8.1946 2.6171 0.1211 12 1 8.8253 3.3082 0.6804 13 6 8.5750 1.1393 0.2322 14 6 9.0059 0.6221 1.6061 15 6 10.0445 0.8061 0.4978 16 16 3.9346 -0.7099 0.0081 17 6 2.2252 -1.1390 0.0005 18 16 1.5697 -2.7746 0.0006 19 6 3.0666 -3.7041 0.0006 20 1 4.0188 -3.1944 0.0009 21 6 3.0222 -5.0876 0.0012 22 7 4.1420 -5.7830 0.0017 23 14 1.3753 -5.9693 0.0013 24 1 0.9392 -6.2035 -1.3988 25 1 1.5111 -7.2716 0.7019 26 1 0.3666 -5.1337 0.7009 27 1 -0.3633 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3632 -0.8902 -0.5135 30 1 4.0798 2.9688 -0.0003 31 1 7.5229 2.3685 -2.0132 32 1 7.8822 4.1125 -1.5328 33 1 8.0126 0.4597 -0.4081 34 1 9.0179 1.3345 2.4310 35 1 8.7269 -0.3980 1.8701 36 1 10.4487 -0.0929 0.0326 37 1 10.7402 1.6397 0.5930 38 1 4.1109 -6.7525 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176744920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:53 Heat of formation + Delta-G solvation = 55.847414 kcal Electronic energy + Delta-G solvation = -22004.878386 eV Core-core repulsion = 18681.026504 eV Total energy + Delta-G solvation = -3323.851883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56039 -38.83713 -37.68630 -35.21878 -34.72664 -32.75102 -30.64331 -27.20455 -25.91721 -25.77416 -23.80221 -22.71978 -22.18110 -20.98828 -20.59314 -19.36913 -17.90307 -17.75019 -16.80827 -15.96194 -15.64875 -15.40334 -15.27570 -15.06114 -14.35844 -14.09477 -13.90112 -13.33109 -13.19136 -12.77460 -12.70975 -12.20774 -12.01734 -11.69604 -11.57200 -11.43272 -11.42074 -11.33030 -11.27330 -11.05078 -10.68614 -10.60168 -10.14120 -10.11880 -9.75492 -9.45672 -9.44783 -9.11755 -8.84344 -8.75961 -7.87569 -6.71991 -6.55333 -4.28430 1.31315 1.80697 2.32279 2.46523 2.76478 2.89638 3.10455 3.20282 3.35492 3.38436 3.59152 4.03362 4.07285 4.26170 4.49023 4.52921 4.60088 4.77175 4.84625 5.01343 5.13487 5.21027 5.21945 5.26663 5.43366 5.64992 5.67742 5.86480 5.87558 6.01638 6.06426 6.12591 6.20873 6.34264 6.38443 6.55787 6.89888 7.16410 7.67554 8.02597 8.24063 8.43918 8.84546 10.52515 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.003978 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.872276 B = 7037.332652 C = 8802.223213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.483 5.483 4 C 0.195 3.805 5 N -0.614 5.614 6 C 0.536 3.464 7 O -0.493 6.493 8 C -0.184 4.184 9 H 0.128 0.872 10 C -0.143 4.143 11 C -0.080 4.080 12 H 0.113 0.887 13 C -0.122 4.122 14 C -0.171 4.171 15 C -0.186 4.186 16 S 0.233 5.767 17 C -0.240 4.240 18 S 0.052 5.948 19 C -0.544 4.544 20 H 0.105 0.895 21 C 0.102 3.898 22 N -0.858 5.858 23 Si 0.852 3.148 24 H -0.261 1.261 25 H -0.265 1.265 26 H -0.236 1.236 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.414 0.586 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.079 17.188 -0.046 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 N -0.205 5.205 4 C -0.175 4.175 5 N -0.262 5.262 6 C 0.322 3.678 7 O -0.367 6.367 8 C -0.205 4.205 9 H 0.145 0.855 10 C -0.181 4.181 11 C -0.099 4.099 12 H 0.130 0.870 13 C -0.140 4.140 14 C -0.208 4.208 15 C -0.223 4.223 16 S 0.478 5.522 17 C -0.477 4.477 18 S 0.299 5.701 19 C -0.693 4.693 20 H 0.122 0.878 21 C -0.109 4.109 22 N -0.491 5.491 23 Si 0.675 3.325 24 H -0.186 1.186 25 H -0.190 1.190 26 H -0.160 1.160 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.252 0.748 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.151 0.849 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.105 15.581 -0.032 16.396 hybrid contribution -0.366 0.530 0.105 0.653 sum 4.739 16.112 0.074 16.794 Atomic orbital electron populations 1.20145 0.88042 1.02185 1.01899 1.19107 0.96773 0.84624 1.10540 1.65870 1.02932 1.32170 1.19521 1.24001 0.90003 0.93507 1.10029 1.42437 1.04383 1.08009 1.71416 1.19893 0.81283 0.90381 0.76274 1.90668 1.76187 1.22393 1.47432 1.22105 0.92084 0.98938 1.07373 0.85453 1.23085 1.00179 1.03397 0.91412 1.21828 0.91789 0.96482 0.99781 0.86951 1.22084 0.96547 0.94215 1.01180 1.22827 1.03324 1.02598 0.92026 1.22968 0.92148 1.03032 1.04111 1.86141 1.00551 0.94350 1.71156 1.28166 1.01797 1.04440 1.13250 1.82463 1.13493 0.89213 1.84909 1.22655 0.92386 0.94475 1.59747 0.87776 1.24736 0.97354 0.96227 0.92623 1.70012 1.26449 1.07655 1.44997 0.86820 0.83922 0.81372 0.80363 1.18571 1.18987 1.15979 0.91723 0.91735 0.91105 0.74839 0.87711 0.87416 0.84875 0.89393 0.88596 0.88877 0.89339 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.00 0.36 -0.70 16 2 C 0.03 0.64 6.73 -83.96 -0.57 0.08 16 3 N -0.48 -9.47 10.55 -9.79 -0.10 -9.57 16 4 C 0.19 3.68 8.40 -87.20 -0.73 2.94 16 5 N -0.61 -8.75 5.40 -11.78 -0.06 -8.82 16 6 C 0.54 7.43 7.54 -10.98 -0.08 7.35 16 7 O -0.49 -8.60 10.63 5.55 0.06 -8.54 16 8 C -0.18 -1.72 6.19 -91.77 -0.57 -2.29 16 9 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 10 C -0.14 -1.17 9.96 -26.73 -0.27 -1.43 16 11 C -0.08 -0.75 5.85 -90.62 -0.53 -1.28 16 12 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.12 -1.48 4.34 -90.62 -0.39 -1.87 16 14 C -0.17 -2.05 10.25 -26.73 -0.27 -2.33 16 15 C -0.19 -1.96 10.25 -26.73 -0.27 -2.23 16 16 S 0.23 5.12 18.35 -107.50 -1.97 3.15 16 17 C -0.24 -5.45 6.67 29.46 0.20 -5.25 16 18 S 0.05 1.25 18.70 -107.50 -2.01 -0.76 16 19 C -0.54 -15.16 9.80 30.80 0.30 -14.86 16 20 H 0.10 3.11 6.21 -52.49 -0.33 2.78 16 21 C 0.10 2.82 5.49 -17.49 -0.10 2.72 16 22 N -0.86 -24.75 13.98 55.47 0.78 -23.97 16 23 Si 0.85 19.70 27.73 -169.99 -4.71 14.98 16 24 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.24 -5.22 6.73 56.52 0.38 -4.84 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.16 7.37 -51.93 -0.38 0.78 16 30 H 0.41 4.46 8.82 -40.82 -0.36 4.10 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.13 2.01 5.96 -51.93 -0.31 1.70 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.28 7.33 8.32 -40.82 -0.34 6.99 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -31.55 345.89 -10.50 -42.05 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.76 Total: 5.41 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.92 Total: -19.13 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.61 Total: -42.36 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.06 Total: -8.54 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.71 Total: 14.98 kcal Atomic # 16 Polarization: 6.37 SS G_CDS: -3.98 Total: 2.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.55 -10.50 -42.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176744920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.901 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds