Wall clock time and date at job start Tue Mar 31 2020 13:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31597 * 122.23073 * 2 1 4 4 C 1.29941 * 117.13643 * 179.97438 * 3 2 1 5 5 N 1.38894 * 125.36335 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00231 * 179.97438 * 5 4 3 7 7 O 1.21288 * 119.99794 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00056 * 180.02562 * 6 5 4 9 9 H 1.09002 * 115.54811 * 29.32136 * 8 6 5 10 10 C 1.52999 * 117.49782 * 243.61744 * 8 6 5 11 11 C 1.52997 * 117.50001 * 174.99286 * 8 6 5 12 12 H 1.08995 * 117.50398 * 214.97644 * 11 8 6 13 13 C 1.53002 * 117.49773 * 359.97438 * 11 8 6 14 14 C 1.53001 * 117.49922 * 254.83378 * 13 11 8 15 15 C 1.53002 * 60.00054 * 252.50841 * 14 13 11 16 16 S 1.76137 * 109.27402 * 359.75680 * 4 3 2 17 17 C 1.34652 * 122.23286 * 179.97438 * 2 1 3 18 18 S 1.76208 * 125.92743 * 0.02562 * 17 2 1 19 19 C 1.76202 * 99.99628 * 179.97438 * 18 17 2 20 20 H 1.07997 * 120.00614 * 0.02562 * 19 18 17 21 21 C 1.38428 * 119.99683 * 179.97438 * 19 18 17 22 22 N 1.31813 * 119.99853 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00114 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47046 * 90.00018 * 23 21 19 25 25 H 1.48510 * 109.47121 * 209.99883 * 23 21 19 26 26 H 1.48494 * 109.47150 * 329.99397 * 23 21 19 27 27 H 1.08997 * 109.47259 * 270.02496 * 1 2 3 28 28 H 1.09004 * 109.47211 * 30.02393 * 1 2 3 29 29 H 1.09000 * 109.46652 * 150.02088 * 1 2 3 30 30 H 0.97009 * 119.99819 * 0.02562 * 5 4 3 31 31 H 1.09001 * 117.50146 * 359.97438 * 10 8 6 32 32 H 1.08996 * 117.50415 * 145.01839 * 10 8 6 33 33 H 1.09005 * 115.55125 * 40.53940 * 13 11 8 34 34 H 1.08997 * 117.49662 * 0.02562 * 14 13 11 35 35 H 1.09003 * 117.49920 * 145.01954 * 14 13 11 36 36 H 1.08994 * 117.49959 * 252.51075 * 15 14 13 37 37 H 1.08999 * 117.51695 * 107.47468 * 15 14 13 38 38 H 0.97007 * 119.99974 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9978 0.0005 5 7 4.4044 2.0546 0.0001 6 6 5.7298 1.8101 0.0012 7 8 6.1355 0.6670 0.0022 8 6 6.7076 2.9567 0.0014 9 1 6.3598 3.8711 0.4822 10 6 7.6258 3.1023 -1.2138 11 6 8.1946 2.6171 0.1211 12 1 8.8253 3.3082 0.6804 13 6 8.5750 1.1393 0.2322 14 6 9.0059 0.6221 1.6061 15 6 10.0445 0.8061 0.4978 16 16 3.9346 -0.7099 0.0081 17 6 2.2252 -1.1390 0.0005 18 16 1.5697 -2.7746 0.0006 19 6 3.0666 -3.7041 0.0006 20 1 4.0188 -3.1944 0.0009 21 6 3.0222 -5.0876 0.0012 22 7 4.1420 -5.7830 0.0017 23 14 1.3753 -5.9693 0.0013 24 1 0.9392 -6.2035 -1.3988 25 1 1.5111 -7.2716 0.7019 26 1 0.3666 -5.1337 0.7009 27 1 -0.3633 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3632 -0.8902 -0.5135 30 1 4.0798 2.9688 -0.0003 31 1 7.5229 2.3685 -2.0132 32 1 7.8822 4.1125 -1.5328 33 1 8.0126 0.4597 -0.4081 34 1 9.0179 1.3345 2.4310 35 1 8.7269 -0.3980 1.8701 36 1 10.4487 -0.0929 0.0326 37 1 10.7402 1.6397 0.5930 38 1 4.1109 -6.7525 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176744920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:53 Heat of formation + Delta-G solvation = 36.601248 kcal Electronic energy + Delta-G solvation = -22005.712963 eV Core-core repulsion = 18681.026504 eV Total energy + Delta-G solvation = -3324.686459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71756 -40.35435 -38.71686 -36.11135 -36.05762 -34.83342 -32.12588 -28.82615 -27.92112 -26.97553 -24.64236 -23.93390 -23.14890 -22.34128 -21.55153 -20.84391 -19.52844 -19.23402 -18.08114 -17.49410 -17.22438 -16.79356 -16.54965 -16.33027 -15.67793 -15.49202 -15.06429 -14.99482 -14.49892 -14.24931 -13.57678 -13.57608 -13.48792 -13.37472 -13.17496 -13.11631 -12.55508 -12.38403 -12.29477 -12.14763 -12.11239 -11.93707 -11.80151 -11.33094 -11.21696 -10.97732 -10.71940 -10.58634 -10.53980 -10.31975 -9.61357 -8.62819 -8.53350 -6.35727 -0.28766 0.15682 0.76216 1.05058 1.13739 1.27756 1.38587 1.51913 1.66390 1.94725 2.13097 2.50126 2.60775 2.76025 3.23069 3.35726 3.59427 3.81015 3.84062 3.93921 4.20698 4.34993 4.36463 4.42430 4.43308 4.68327 4.78473 4.83416 4.87176 4.91198 4.95889 5.03342 5.04928 5.21414 5.27352 5.42744 5.55539 5.59564 5.97879 6.06343 6.75569 6.79486 6.88646 8.49886 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.003978 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.872276 B = 7037.332652 C = 8802.223213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.488 5.488 4 C 0.236 3.764 5 N -0.602 5.602 6 C 0.528 3.472 7 O -0.529 6.529 8 C -0.181 4.181 9 H 0.171 0.829 10 C -0.127 4.127 11 C -0.083 4.083 12 H 0.146 0.854 13 C -0.135 4.135 14 C -0.186 4.186 15 C -0.168 4.168 16 S 0.165 5.835 17 C -0.280 4.280 18 S 0.058 5.942 19 C -0.567 4.567 20 H 0.067 0.933 21 C 0.049 3.951 22 N -0.908 5.908 23 Si 0.914 3.086 24 H -0.252 1.252 25 H -0.254 1.254 26 H -0.219 1.219 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.436 0.564 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 21.148 0.049 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 N -0.211 5.211 4 C -0.137 4.137 5 N -0.253 5.253 6 C 0.317 3.683 7 O -0.404 6.404 8 C -0.202 4.202 9 H 0.188 0.812 10 C -0.164 4.164 11 C -0.101 4.101 12 H 0.164 0.836 13 C -0.153 4.153 14 C -0.223 4.223 15 C -0.205 4.205 16 S 0.410 5.590 17 C -0.515 4.515 18 S 0.303 5.697 19 C -0.715 4.715 20 H 0.085 0.915 21 C -0.158 4.158 22 N -0.544 5.544 23 Si 0.733 3.267 24 H -0.176 1.176 25 H -0.178 1.178 26 H -0.142 1.142 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.278 0.722 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.136 0.864 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.218 19.611 0.061 20.060 hybrid contribution 0.105 -0.390 0.052 0.408 sum 4.323 19.221 0.113 19.702 Atomic orbital electron populations 1.20319 0.85130 1.03529 1.03455 1.19847 0.98671 0.83965 1.06352 1.66103 1.02605 1.31201 1.21174 1.24301 0.90367 0.93310 1.05678 1.42663 1.04024 1.07851 1.70806 1.21045 0.81440 0.91350 0.74506 1.90711 1.76570 1.24679 1.48464 1.22261 0.90701 0.98136 1.09079 0.81178 1.23219 0.98230 1.04809 0.90154 1.21947 0.91982 0.94817 1.01366 0.83639 1.21991 0.97346 0.95832 1.00153 1.22821 1.04926 1.01532 0.92986 1.23028 0.91748 1.03585 1.02117 1.86526 1.02033 0.97802 1.72594 1.28109 1.01699 1.04462 1.17193 1.81875 1.10820 0.89500 1.87528 1.22837 0.93230 0.95447 1.59977 0.91536 1.25725 1.01367 0.96837 0.91884 1.70123 1.29083 1.08236 1.46938 0.85895 0.79252 0.80488 0.81051 1.17639 1.17752 1.14249 0.89896 0.89287 0.90834 0.72215 0.89827 0.83435 0.88910 0.87578 0.91621 0.89726 0.86392 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.01 10.02 71.24 0.71 -1.29 16 2 C 0.05 2.10 6.73 41.77 0.28 2.38 16 3 N -0.49 -18.29 10.55 -184.87 -1.95 -20.25 16 4 C 0.24 8.73 8.40 179.15 1.50 10.23 16 5 N -0.60 -16.00 5.40 -309.57 -1.67 -17.67 16 6 C 0.53 14.07 7.54 87.66 0.66 14.73 16 7 O -0.53 -19.21 10.63 -3.05 -0.03 -19.24 16 8 C -0.18 -2.74 6.19 -11.54 -0.07 -2.82 16 9 H 0.17 1.20 8.14 -2.39 -0.02 1.18 16 10 C -0.13 -1.61 9.96 30.59 0.30 -1.31 16 11 C -0.08 -1.29 5.85 -10.79 -0.06 -1.35 16 12 H 0.15 1.39 8.14 -2.39 -0.02 1.38 16 13 C -0.14 -3.26 4.34 -10.79 -0.05 -3.31 16 14 C -0.19 -4.56 10.25 30.60 0.31 -4.24 16 15 C -0.17 -3.43 10.25 30.60 0.31 -3.11 16 16 S 0.16 7.62 18.35 -56.49 -1.04 6.58 16 17 C -0.28 -12.95 6.67 67.00 0.45 -12.50 16 18 S 0.06 2.84 18.70 -56.49 -1.06 1.78 16 19 C -0.57 -33.38 9.80 67.87 0.67 -32.72 16 20 H 0.07 4.32 6.21 -2.91 -0.02 4.30 16 21 C 0.05 2.80 5.49 84.74 0.47 3.26 16 22 N -0.91 -55.29 13.98 21.59 0.30 -54.99 16 23 Si 0.91 41.32 27.73 68.60 1.90 43.22 16 24 H -0.25 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.22 -9.24 6.73 99.48 0.67 -8.57 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.07 2.26 7.37 -2.39 -0.02 2.24 16 30 H 0.44 7.85 8.82 -92.70 -0.82 7.03 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 3.03 5.96 -2.38 -0.01 3.01 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.15 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.28 15.64 8.32 -92.70 -0.77 14.87 16 Total: -1.00 -75.33 345.89 2.20 -73.14 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.25 Total: 19.46 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 5.49 Total: -32.04 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.32 Total: -92.90 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.03 Total: -19.24 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.90 Total: 43.22 kcal Atomic # 16 Polarization: 10.46 SS G_CDS: -2.09 Total: 8.36 kcal Total: -75.33 2.20 -73.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176744920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.737 kcal (2) G-P(sol) polarization free energy of solvation -75.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds