Wall clock time and date at job start Tue Mar 31 2020 13:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31599 * 122.22896 * 2 1 4 4 C 1.29943 * 117.13534 * 180.02562 * 3 2 1 5 5 N 1.38892 * 125.36302 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00143 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00002 * 179.97438 * 6 5 4 9 9 H 1.08999 * 115.54993 * 325.72350 * 8 6 5 10 10 C 1.53000 * 117.49681 * 111.39157 * 8 6 5 11 11 C 1.53002 * 60.02940 * 107.47810 * 10 8 6 12 12 H 1.08999 * 117.49664 * 252.51862 * 11 10 8 13 13 C 1.52999 * 117.49968 * 107.50530 * 11 10 8 14 14 C 1.52997 * 117.49812 * 180.13697 * 13 11 10 15 15 C 1.52997 * 117.50323 * 111.47686 * 13 11 10 16 16 S 1.76142 * 109.27220 * 0.26250 * 4 3 2 17 17 C 1.34657 * 122.23278 * 180.02562 * 2 1 3 18 18 S 1.76197 * 125.92891 * 359.97438 * 17 2 1 19 19 C 1.76199 * 99.99927 * 180.02562 * 18 17 2 20 20 H 1.07999 * 119.99765 * 0.02562 * 19 18 17 21 21 C 1.38426 * 119.99954 * 179.97438 * 19 18 17 22 22 N 1.31812 * 120.00022 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 120.00224 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47263 * 89.99706 * 23 21 19 25 25 H 1.48501 * 109.47037 * 209.99829 * 23 21 19 26 26 H 1.48497 * 109.46529 * 329.99763 * 23 21 19 27 27 H 1.08998 * 109.47186 * 89.97573 * 1 2 3 28 28 H 1.09002 * 109.47181 * 209.97478 * 1 2 3 29 29 H 1.09000 * 109.47401 * 329.97150 * 1 2 3 30 30 H 0.96999 * 119.99995 * 359.97438 * 5 4 3 31 31 H 1.09002 * 117.49833 * 214.97915 * 10 8 6 32 32 H 1.09002 * 117.49953 * 359.97438 * 10 8 6 33 33 H 1.09002 * 115.54478 * 325.80228 * 13 11 10 34 34 H 1.09003 * 117.50277 * 359.97438 * 14 13 11 35 35 H 1.09002 * 117.49903 * 145.01265 * 14 13 11 36 36 H 1.08999 * 117.50002 * 214.97727 * 15 13 11 37 37 H 1.09005 * 117.49770 * 359.97438 * 15 13 11 38 38 H 0.97004 * 119.99975 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 -0.0005 5 7 4.4043 2.0547 -0.0001 6 6 5.7297 1.8101 -0.0002 7 8 6.1354 0.6672 -0.0002 8 6 6.7076 2.9569 -0.0003 9 1 6.3942 3.8418 -0.5542 10 6 7.5427 3.1732 1.2633 11 6 8.1992 2.6135 -0.0003 12 1 8.4728 1.5584 -0.0001 13 6 9.1375 3.5386 -0.7779 14 6 9.7916 2.9799 -2.0432 15 6 10.6282 3.1939 -0.7794 16 16 3.9345 -0.7099 -0.0087 17 6 2.2252 -1.1390 -0.0005 18 16 1.5697 -2.7746 -0.0006 19 6 3.0666 -3.7040 -0.0006 20 1 4.0188 -3.1943 -0.0001 21 6 3.0222 -5.0876 -0.0001 22 7 4.1420 -5.7829 -0.0006 23 14 1.3753 -5.9693 -0.0002 24 1 0.9393 -6.2034 -1.4003 25 1 1.5111 -7.2717 0.7003 26 1 0.3666 -5.1337 0.6993 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 4.0798 2.9688 0.0003 31 1 7.7791 4.2006 1.5405 32 1 7.3845 2.4865 2.0948 33 1 8.8649 4.5939 -0.7762 34 1 9.5537 1.9531 -2.3214 35 1 9.9496 3.6678 -2.8739 36 1 11.3363 4.0225 -0.7791 37 1 10.9405 2.3083 -0.2259 38 1 4.1109 -6.7525 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176744934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:56 Heat of formation + Delta-G solvation = 48.585615 kcal Electronic energy + Delta-G solvation = -21505.525713 eV Core-core repulsion = 18181.358936 eV Total energy + Delta-G solvation = -3324.166778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46003 -38.84217 -38.05672 -35.35178 -34.73610 -32.75146 -30.64780 -27.21197 -25.94783 -25.84526 -23.91753 -22.81258 -22.43962 -21.01058 -20.38070 -19.58330 -18.10732 -17.70827 -16.87082 -16.12763 -15.70246 -15.52469 -15.29758 -15.11695 -14.46437 -14.06987 -13.98351 -13.34902 -13.21552 -12.78051 -12.76912 -12.19625 -12.01692 -11.89230 -11.66374 -11.57029 -11.49442 -11.34833 -11.29545 -11.17681 -10.80538 -10.62036 -10.36209 -10.13683 -9.94920 -9.78285 -9.45811 -9.16417 -8.85232 -8.77126 -7.88503 -6.72394 -6.55264 -4.28477 1.30184 1.79950 2.31254 2.45785 2.74361 2.86714 3.10609 3.20061 3.24237 3.37866 3.53439 3.88596 4.03292 4.15199 4.39637 4.48902 4.50231 4.67873 4.84627 4.88911 4.91159 4.96812 4.99767 5.14562 5.39963 5.40782 5.60779 5.66199 5.80839 5.86247 5.88543 6.03422 6.08168 6.12563 6.34764 6.40981 6.88196 7.14521 7.67646 7.97609 8.24278 8.43002 8.84475 10.52632 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.003203 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.703506 B = 8739.522040 C =10156.059367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.482 5.482 4 C 0.193 3.807 5 N -0.612 5.612 6 C 0.535 3.465 7 O -0.502 6.502 8 C -0.180 4.180 9 H 0.129 0.871 10 C -0.142 4.142 11 C -0.085 4.085 12 H 0.122 0.878 13 C -0.128 4.128 14 C -0.176 4.176 15 C -0.174 4.174 16 S 0.231 5.769 17 C -0.240 4.240 18 S 0.054 5.946 19 C -0.544 4.544 20 H 0.104 0.896 21 C 0.102 3.898 22 N -0.857 5.857 23 Si 0.852 3.148 24 H -0.261 1.261 25 H -0.265 1.265 26 H -0.236 1.236 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.416 0.584 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 18.857 -0.162 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.203 5.203 4 C -0.177 4.177 5 N -0.261 5.261 6 C 0.321 3.679 7 O -0.376 6.376 8 C -0.201 4.201 9 H 0.147 0.853 10 C -0.180 4.180 11 C -0.103 4.103 12 H 0.140 0.860 13 C -0.146 4.146 14 C -0.213 4.213 15 C -0.211 4.211 16 S 0.477 5.523 17 C -0.476 4.476 18 S 0.301 5.699 19 C -0.693 4.693 20 H 0.122 0.878 21 C -0.110 4.110 22 N -0.491 5.491 23 Si 0.676 3.324 24 H -0.186 1.186 25 H -0.190 1.190 26 H -0.160 1.160 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.253 0.747 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.686 17.249 -0.172 18.162 hybrid contribution -0.369 0.477 -0.089 0.610 sum 5.316 17.726 -0.261 18.508 Atomic orbital electron populations 1.20147 0.87998 1.02213 1.01914 1.19111 0.96783 0.84598 1.10561 1.65870 1.02882 1.32173 1.19420 1.24000 0.90022 0.93471 1.10207 1.42361 1.04312 1.08069 1.71347 1.19894 0.81432 0.90324 0.76288 1.90719 1.77024 1.22288 1.47539 1.22095 0.92606 0.99230 1.06200 0.85292 1.23082 1.00511 1.03251 0.91128 1.21869 0.89473 1.00430 0.98549 0.85984 1.21719 0.93674 0.98532 1.00698 1.22997 1.03939 1.02860 0.91536 1.22960 0.92849 1.03617 1.01628 1.86179 1.00589 0.94406 1.71154 1.28166 1.01720 1.04486 1.13210 1.82450 1.13475 0.89169 1.84825 1.22659 0.92392 0.94486 1.59756 0.87784 1.24742 0.97378 0.96227 0.92622 1.70013 1.26458 1.07663 1.44946 0.86812 0.83881 0.81356 0.80373 1.18552 1.18987 1.15995 0.91701 0.91085 0.91716 0.74706 0.87396 0.87746 0.87600 0.88309 0.88689 0.88692 0.88453 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.00 0.36 -0.70 16 2 C 0.03 0.64 6.73 -83.96 -0.57 0.08 16 3 N -0.48 -9.51 10.55 -9.78 -0.10 -9.61 16 4 C 0.19 3.70 8.40 -87.20 -0.73 2.97 16 5 N -0.61 -8.92 5.40 -11.78 -0.06 -8.98 16 6 C 0.53 7.70 7.57 -10.98 -0.08 7.61 16 7 O -0.50 -9.35 13.78 5.56 0.08 -9.27 16 8 C -0.18 -1.74 5.91 -91.73 -0.54 -2.28 16 9 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 10 C -0.14 -1.18 9.95 -26.73 -0.27 -1.44 16 11 C -0.08 -0.81 5.36 -90.58 -0.49 -1.30 16 12 H 0.12 1.44 7.67 -51.93 -0.40 1.04 16 13 C -0.13 -1.00 5.85 -90.62 -0.53 -1.53 16 14 C -0.18 -1.41 10.25 -26.70 -0.27 -1.68 16 15 C -0.17 -1.27 10.25 -26.70 -0.27 -1.54 16 16 S 0.23 5.19 18.35 -107.50 -1.97 3.22 16 17 C -0.24 -5.47 6.67 29.46 0.20 -5.28 16 18 S 0.05 1.29 18.70 -107.50 -2.01 -0.72 16 19 C -0.54 -15.25 9.80 30.80 0.30 -14.95 16 20 H 0.10 3.13 6.21 -52.49 -0.33 2.80 16 21 C 0.10 2.82 5.49 -17.49 -0.10 2.73 16 22 N -0.86 -24.84 13.98 55.47 0.78 -24.07 16 23 Si 0.85 19.75 27.73 -169.99 -4.71 15.03 16 24 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.24 -5.23 6.73 56.52 0.38 -4.85 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.17 7.37 -51.93 -0.38 0.79 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.42 4.53 8.82 -40.82 -0.36 4.17 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.28 7.35 8.32 -40.82 -0.34 7.01 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -32.20 351.52 -10.55 -42.75 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.85 Total: 3.66 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.99 Total: -17.30 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.61 Total: -42.66 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.71 Total: 15.03 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -3.98 Total: 2.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.20 -10.55 -42.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176744934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.336 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds