Wall clock time and date at job start Tue Mar 31 2020 13:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31599 * 122.22896 * 2 1 4 4 C 1.29943 * 117.13534 * 180.02562 * 3 2 1 5 5 N 1.38892 * 125.36302 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00143 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00002 * 179.97438 * 6 5 4 9 9 H 1.08999 * 115.54993 * 325.72350 * 8 6 5 10 10 C 1.53000 * 117.49681 * 111.39157 * 8 6 5 11 11 C 1.53002 * 60.02940 * 107.47810 * 10 8 6 12 12 H 1.08999 * 117.49664 * 252.51862 * 11 10 8 13 13 C 1.52999 * 117.49968 * 107.50530 * 11 10 8 14 14 C 1.52997 * 117.49812 * 180.13697 * 13 11 10 15 15 C 1.52997 * 117.50323 * 111.47686 * 13 11 10 16 16 S 1.76142 * 109.27220 * 0.26250 * 4 3 2 17 17 C 1.34657 * 122.23278 * 180.02562 * 2 1 3 18 18 S 1.76197 * 125.92891 * 359.97438 * 17 2 1 19 19 C 1.76199 * 99.99927 * 180.02562 * 18 17 2 20 20 H 1.07999 * 119.99765 * 0.02562 * 19 18 17 21 21 C 1.38426 * 119.99954 * 179.97438 * 19 18 17 22 22 N 1.31812 * 120.00022 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 120.00224 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47263 * 89.99706 * 23 21 19 25 25 H 1.48501 * 109.47037 * 209.99829 * 23 21 19 26 26 H 1.48497 * 109.46529 * 329.99763 * 23 21 19 27 27 H 1.08998 * 109.47186 * 89.97573 * 1 2 3 28 28 H 1.09002 * 109.47181 * 209.97478 * 1 2 3 29 29 H 1.09000 * 109.47401 * 329.97150 * 1 2 3 30 30 H 0.96999 * 119.99995 * 359.97438 * 5 4 3 31 31 H 1.09002 * 117.49833 * 214.97915 * 10 8 6 32 32 H 1.09002 * 117.49953 * 359.97438 * 10 8 6 33 33 H 1.09002 * 115.54478 * 325.80228 * 13 11 10 34 34 H 1.09003 * 117.50277 * 359.97438 * 14 13 11 35 35 H 1.09002 * 117.49903 * 145.01265 * 14 13 11 36 36 H 1.08999 * 117.50002 * 214.97727 * 15 13 11 37 37 H 1.09005 * 117.49770 * 359.97438 * 15 13 11 38 38 H 0.97004 * 119.99975 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 -0.0005 5 7 4.4043 2.0547 -0.0001 6 6 5.7297 1.8101 -0.0002 7 8 6.1354 0.6672 -0.0002 8 6 6.7076 2.9569 -0.0003 9 1 6.3942 3.8418 -0.5542 10 6 7.5427 3.1732 1.2633 11 6 8.1992 2.6135 -0.0003 12 1 8.4728 1.5584 -0.0001 13 6 9.1375 3.5386 -0.7779 14 6 9.7916 2.9799 -2.0432 15 6 10.6282 3.1939 -0.7794 16 16 3.9345 -0.7099 -0.0087 17 6 2.2252 -1.1390 -0.0005 18 16 1.5697 -2.7746 -0.0006 19 6 3.0666 -3.7040 -0.0006 20 1 4.0188 -3.1943 -0.0001 21 6 3.0222 -5.0876 -0.0001 22 7 4.1420 -5.7829 -0.0006 23 14 1.3753 -5.9693 -0.0002 24 1 0.9393 -6.2034 -1.4003 25 1 1.5111 -7.2717 0.7003 26 1 0.3666 -5.1337 0.6993 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 4.0798 2.9688 0.0003 31 1 7.7791 4.2006 1.5405 32 1 7.3845 2.4865 2.0948 33 1 8.8649 4.5939 -0.7762 34 1 9.5537 1.9531 -2.3214 35 1 9.9496 3.6678 -2.8739 36 1 11.3363 4.0225 -0.7791 37 1 10.9405 2.3083 -0.2259 38 1 4.1109 -6.7525 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176744934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:56 Heat of formation + Delta-G solvation = 28.945347 kcal Electronic energy + Delta-G solvation = -21506.377379 eV Core-core repulsion = 18181.358936 eV Total energy + Delta-G solvation = -3325.018444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.68752 -40.34335 -38.95178 -36.25787 -35.99549 -34.83806 -32.14721 -28.84044 -27.92978 -27.08326 -24.68257 -23.96997 -23.14268 -22.40259 -21.22111 -20.94657 -19.74701 -19.23326 -18.25052 -17.51746 -17.24988 -16.85324 -16.67420 -16.36232 -15.71600 -15.52185 -15.11093 -14.99731 -14.51382 -14.14861 -13.66437 -13.54167 -13.49652 -13.38221 -13.19238 -13.10246 -12.52829 -12.36920 -12.31042 -12.18931 -12.16912 -11.94867 -11.87623 -11.42284 -11.30194 -11.02855 -10.89863 -10.61891 -10.58322 -10.47814 -9.64577 -8.63047 -8.55154 -6.36376 -0.32485 0.12718 0.74055 1.03828 1.07424 1.28038 1.38216 1.47393 1.63118 1.91979 2.12895 2.48984 2.53190 2.75689 3.15659 3.32972 3.53547 3.68300 3.80499 3.98825 4.18576 4.26982 4.30801 4.34806 4.35382 4.64923 4.79338 4.82724 4.83763 4.88960 4.94703 5.02398 5.06062 5.15362 5.28605 5.37421 5.42665 5.59207 5.91948 6.06013 6.73252 6.75085 6.81010 8.49678 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.003203 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.703506 B = 8739.522040 C =10156.059367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.484 5.484 4 C 0.232 3.768 5 N -0.598 5.598 6 C 0.531 3.469 7 O -0.546 6.546 8 C -0.175 4.175 9 H 0.170 0.830 10 C -0.122 4.122 11 C -0.097 4.097 12 H 0.087 0.913 13 C -0.120 4.120 14 C -0.190 4.190 15 C -0.171 4.171 16 S 0.159 5.841 17 C -0.277 4.277 18 S 0.062 5.938 19 C -0.568 4.568 20 H 0.066 0.934 21 C 0.048 3.952 22 N -0.908 5.908 23 Si 0.915 3.085 24 H -0.252 1.252 25 H -0.253 1.253 26 H -0.219 1.219 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.438 0.562 31 H 0.146 0.854 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 22.641 -0.034 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 N -0.207 5.207 4 C -0.140 4.140 5 N -0.250 5.250 6 C 0.320 3.680 7 O -0.422 6.422 8 C -0.196 4.196 9 H 0.187 0.813 10 C -0.159 4.159 11 C -0.116 4.116 12 H 0.105 0.895 13 C -0.138 4.138 14 C -0.227 4.227 15 C -0.208 4.208 16 S 0.405 5.595 17 C -0.512 4.512 18 S 0.307 5.693 19 C -0.716 4.716 20 H 0.084 0.916 21 C -0.159 4.159 22 N -0.543 5.543 23 Si 0.734 3.266 24 H -0.176 1.176 25 H -0.177 1.177 26 H -0.142 1.142 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.280 0.720 31 H 0.164 0.836 32 H 0.108 0.892 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.222 21.106 -0.041 21.524 hybrid contribution 0.276 -0.379 -0.128 0.486 sum 4.498 20.726 -0.169 21.209 Atomic orbital electron populations 1.20327 0.84983 1.03589 1.03535 1.19866 0.98714 0.83885 1.06371 1.66102 1.02467 1.31223 1.20859 1.24282 0.90407 0.93189 1.06105 1.42537 1.03855 1.07996 1.70582 1.20976 0.81648 0.91093 0.74306 1.90731 1.77567 1.24818 1.49088 1.22211 0.91011 0.98238 1.08135 0.81261 1.23219 0.98131 1.04805 0.89758 1.21838 0.89910 0.99423 1.00435 0.89470 1.21776 0.93211 0.99195 0.99607 1.23029 1.05006 1.02144 0.92490 1.23027 0.93201 1.03875 1.00714 1.86572 1.02283 0.97966 1.72654 1.28112 1.01445 1.04596 1.17037 1.81858 1.10734 0.89347 1.87341 1.22841 0.93239 0.95472 1.60049 0.91596 1.25744 1.01441 0.96838 0.91859 1.70122 1.29119 1.08266 1.46834 0.85883 0.79160 0.80486 0.81074 1.17619 1.17732 1.14195 0.89795 0.90792 0.89227 0.71955 0.83587 0.89244 0.84809 0.90559 0.87160 0.86695 0.89587 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.02 71.24 0.71 -1.27 16 2 C 0.05 2.10 6.73 41.77 0.28 2.38 16 3 N -0.48 -18.15 10.55 -184.87 -1.95 -20.10 16 4 C 0.23 8.71 8.40 179.15 1.50 10.21 16 5 N -0.60 -16.25 5.40 -309.58 -1.67 -17.93 16 6 C 0.53 14.82 7.57 87.66 0.66 15.49 16 7 O -0.55 -21.15 13.78 -3.03 -0.04 -21.19 16 8 C -0.18 -2.91 5.91 -11.51 -0.07 -2.97 16 9 H 0.17 1.50 8.14 -2.39 -0.02 1.48 16 10 C -0.12 -1.67 9.95 30.60 0.30 -1.37 16 11 C -0.10 -1.74 5.36 -10.77 -0.06 -1.80 16 12 H 0.09 2.20 7.67 -2.39 -0.02 2.18 16 13 C -0.12 -1.56 5.85 -10.80 -0.06 -1.63 16 14 C -0.19 -2.85 10.25 30.62 0.31 -2.54 16 15 C -0.17 -2.24 10.25 30.62 0.31 -1.93 16 16 S 0.16 7.48 18.35 -56.49 -1.04 6.44 16 17 C -0.28 -12.84 6.67 67.00 0.45 -12.39 16 18 S 0.06 3.03 18.70 -56.49 -1.06 1.98 16 19 C -0.57 -33.46 9.80 67.86 0.67 -32.80 16 20 H 0.07 4.29 6.21 -2.91 -0.02 4.27 16 21 C 0.05 2.76 5.49 84.74 0.47 3.23 16 22 N -0.91 -55.28 13.98 21.59 0.30 -54.98 16 23 Si 0.92 41.22 27.73 68.60 1.90 43.13 16 24 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.22 -9.16 6.73 99.48 0.67 -8.49 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 2.25 7.37 -2.39 -0.02 2.23 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.44 7.99 8.82 -92.71 -0.82 7.17 16 31 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.28 15.65 8.32 -92.71 -0.77 14.88 16 Total: -1.00 -75.65 351.52 2.18 -73.47 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.25 Total: 16.56 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 5.48 Total: -27.38 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -3.32 Total: -93.00 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.04 Total: -21.19 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.90 Total: 43.13 kcal Atomic # 16 Polarization: 10.51 SS G_CDS: -2.09 Total: 8.42 kcal Total: -75.65 2.18 -73.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176744934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.416 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds