Wall clock time and date at job start Tue Mar 31 2020 13:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31597 * 122.23166 * 2 1 4 4 C 1.29947 * 117.13889 * 179.97438 * 3 2 1 5 5 N 1.38895 * 125.36426 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99650 * 179.97438 * 5 4 3 7 7 O 1.21287 * 120.00285 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99695 * 180.02562 * 6 5 4 9 9 H 1.08997 * 115.55323 * 34.27399 * 8 6 5 10 10 C 1.53000 * 117.49444 * 248.60867 * 8 6 5 11 11 C 1.53000 * 60.00108 * 252.51078 * 10 8 6 12 12 H 1.08995 * 117.50016 * 107.48869 * 11 10 8 13 13 C 1.53003 * 117.50105 * 252.51610 * 11 10 8 14 14 C 1.52991 * 117.50042 * 197.24269 * 13 11 10 15 15 C 1.52992 * 60.00090 * 252.50792 * 14 13 11 16 16 S 1.76139 * 109.26892 * 0.26262 * 4 3 2 17 17 C 1.34658 * 122.23053 * 179.97438 * 2 1 3 18 18 S 1.76196 * 125.92936 * 0.02562 * 17 2 1 19 19 C 1.76197 * 99.99769 * 180.02562 * 18 17 2 20 20 H 1.07997 * 120.00495 * 359.97438 * 19 18 17 21 21 C 1.38430 * 119.99829 * 179.97438 * 19 18 17 22 22 N 1.31815 * 120.00275 * 179.97438 * 21 19 18 23 23 Si 1.86809 * 119.99981 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46962 * 90.00011 * 23 21 19 25 25 H 1.48503 * 109.46846 * 210.00004 * 23 21 19 26 26 H 1.48497 * 109.46948 * 330.00085 * 23 21 19 27 27 H 1.09000 * 109.47551 * 90.02220 * 1 2 3 28 28 H 1.09004 * 109.47328 * 210.02784 * 1 2 3 29 29 H 1.09005 * 109.47067 * 330.02502 * 1 2 3 30 30 H 0.96992 * 119.99853 * 0.02562 * 5 4 3 31 31 H 1.08999 * 117.50124 * 359.97438 * 10 8 6 32 32 H 1.09004 * 117.49973 * 144.99762 * 10 8 6 33 33 H 1.08998 * 115.54507 * 342.94667 * 13 11 10 34 34 H 1.09009 * 117.50172 * 359.97438 * 14 13 11 35 35 H 1.09001 * 117.50375 * 145.01925 * 14 13 11 36 36 H 1.08998 * 117.50076 * 252.51335 * 15 14 13 37 37 H 1.08995 * 117.52224 * 107.47988 * 15 14 13 38 38 H 0.96997 * 120.00244 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5032 0.9978 0.0005 5 7 4.4044 2.0547 0.0001 6 6 5.7297 1.8100 0.0012 7 8 6.1354 0.6670 0.0022 8 6 6.7076 2.9567 0.0014 9 1 6.3940 3.8420 0.5544 10 6 7.5436 3.1722 -1.2618 11 6 8.1987 2.6135 0.0029 12 1 8.4723 1.5585 0.0040 13 6 9.1358 3.5393 0.7812 14 6 10.0919 2.8941 1.7863 15 6 8.8873 3.6961 2.2827 16 16 3.9345 -0.7099 -0.0065 17 6 2.2251 -1.1391 0.0005 18 16 1.5696 -2.7746 0.0006 19 6 3.0665 -3.7041 0.0021 20 1 4.0187 -3.1944 0.0023 21 6 3.0221 -5.0876 0.0032 22 7 4.1418 -5.7831 0.0038 23 14 1.3751 -5.9693 0.0036 24 1 0.9389 -6.2039 -1.3963 25 1 1.5109 -7.2713 0.7047 26 1 0.3664 -5.1334 0.7029 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 4.0799 2.9687 -0.0003 31 1 7.3866 2.4845 -2.0927 32 1 7.7800 4.1994 -1.5397 33 1 9.4926 4.4132 0.2361 34 1 10.0531 1.8100 1.8935 35 1 11.0782 3.3434 1.9027 36 1 9.0810 4.6731 2.7255 37 1 8.0560 3.1401 2.7160 38 1 4.1107 -6.7525 0.0049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176744951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:58 Heat of formation + Delta-G solvation = 29.617245 kcal Electronic energy + Delta-G solvation = -21590.780234 eV Core-core repulsion = 18265.790926 eV Total energy + Delta-G solvation = -3324.989308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70171 -40.35264 -38.99623 -36.24011 -35.91410 -34.83835 -32.14992 -28.84246 -27.93121 -27.14852 -24.70812 -23.92137 -23.22584 -22.42982 -21.30308 -20.70454 -19.71838 -19.23553 -18.29105 -17.49840 -17.24570 -16.86588 -16.56100 -16.46746 -15.72050 -15.56357 -15.27580 -15.00990 -14.51494 -14.15049 -13.59903 -13.59137 -13.47869 -13.36220 -13.19298 -13.10340 -12.56825 -12.35752 -12.31297 -12.17773 -11.94926 -11.93726 -11.88555 -11.43300 -11.30542 -10.98224 -10.88629 -10.63808 -10.61815 -10.58291 -9.64788 -8.63111 -8.55288 -6.36474 -0.32747 0.12443 0.73879 1.03806 1.06972 1.27955 1.38310 1.47201 1.62942 1.91906 2.12850 2.48866 2.59344 2.75609 2.99962 3.36913 3.59766 3.66812 3.77492 3.99201 4.13833 4.20088 4.32161 4.35008 4.51535 4.64724 4.78905 4.82139 4.83624 4.89331 4.94892 5.02004 5.05309 5.18435 5.28533 5.35440 5.42402 5.59124 5.91434 6.05945 6.72945 6.74992 6.80583 8.49624 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.003249 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.276889 B = 8614.969443 C = 9896.980354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.484 5.484 4 C 0.232 3.768 5 N -0.599 5.599 6 C 0.531 3.469 7 O -0.545 6.545 8 C -0.176 4.176 9 H 0.167 0.833 10 C -0.120 4.120 11 C -0.098 4.098 12 H 0.089 0.911 13 C -0.119 4.119 14 C -0.186 4.186 15 C -0.175 4.175 16 S 0.160 5.840 17 C -0.277 4.277 18 S 0.063 5.937 19 C -0.568 4.568 20 H 0.066 0.934 21 C 0.048 3.952 22 N -0.908 5.908 23 Si 0.915 3.085 24 H -0.252 1.252 25 H -0.254 1.254 26 H -0.219 1.219 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.438 0.562 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 22.697 0.456 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 N -0.207 5.207 4 C -0.140 4.140 5 N -0.250 5.250 6 C 0.319 3.681 7 O -0.422 6.422 8 C -0.197 4.197 9 H 0.184 0.816 10 C -0.157 4.157 11 C -0.117 4.117 12 H 0.107 0.893 13 C -0.137 4.137 14 C -0.223 4.223 15 C -0.212 4.212 16 S 0.405 5.595 17 C -0.512 4.512 18 S 0.308 5.692 19 C -0.716 4.716 20 H 0.084 0.916 21 C -0.159 4.159 22 N -0.543 5.543 23 Si 0.734 3.266 24 H -0.176 1.176 25 H -0.177 1.177 26 H -0.142 1.142 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.280 0.720 31 H 0.108 0.892 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.932 21.162 0.454 21.529 hybrid contribution 0.265 -0.370 0.085 0.463 sum 4.198 20.792 0.539 21.218 Atomic orbital electron populations 1.20327 0.84984 1.03580 1.03545 1.19865 0.98714 0.83885 1.06387 1.66102 1.02470 1.31235 1.20849 1.24282 0.90405 0.93187 1.06131 1.42542 1.03871 1.07990 1.70587 1.20991 0.81644 0.91099 0.74320 1.90732 1.77561 1.24779 1.49089 1.22221 0.91095 0.98111 1.08255 0.81587 1.23270 0.98024 1.04738 0.89698 1.21862 0.89743 0.99589 1.00518 0.89252 1.21809 1.00273 1.00570 0.91032 1.23062 0.95858 0.99347 1.04033 1.23027 0.99794 1.02478 0.95928 1.86570 1.02291 0.97944 1.72655 1.28112 1.01433 1.04593 1.17013 1.81857 1.10724 0.89338 1.87326 1.22844 0.93247 0.95480 1.60066 0.91592 1.25746 1.01442 0.96835 0.91851 1.70120 1.29124 1.08270 1.46822 0.85884 0.79157 0.80482 0.81085 1.17590 1.17742 1.14204 0.89772 0.90795 0.89246 0.71993 0.89187 0.83519 0.84670 0.90385 0.87022 0.86713 0.90083 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.02 71.23 0.71 -1.27 16 2 C 0.05 2.09 6.73 41.77 0.28 2.37 16 3 N -0.48 -18.17 10.55 -184.87 -1.95 -20.12 16 4 C 0.23 8.71 8.40 179.15 1.50 10.21 16 5 N -0.60 -16.32 5.40 -309.57 -1.67 -18.00 16 6 C 0.53 14.84 7.57 87.66 0.66 15.51 16 7 O -0.55 -21.11 13.78 -3.05 -0.04 -21.15 16 8 C -0.18 -2.96 5.83 -11.54 -0.07 -3.03 16 9 H 0.17 1.63 8.14 -2.39 -0.02 1.61 16 10 C -0.12 -1.63 9.95 30.59 0.30 -1.33 16 11 C -0.10 -1.75 5.38 -10.79 -0.06 -1.81 16 12 H 0.09 2.24 7.67 -2.39 -0.02 2.22 16 13 C -0.12 -1.54 5.87 -10.80 -0.06 -1.60 16 14 C -0.19 -2.75 10.25 30.59 0.31 -2.43 16 15 C -0.18 -2.34 10.18 30.59 0.31 -2.03 16 16 S 0.16 7.48 18.35 -56.49 -1.04 6.45 16 17 C -0.28 -12.81 6.67 67.00 0.45 -12.36 16 18 S 0.06 3.05 18.70 -56.49 -1.06 1.99 16 19 C -0.57 -33.48 9.80 67.87 0.67 -32.81 16 20 H 0.07 4.29 6.21 -2.91 -0.02 4.27 16 21 C 0.05 2.77 5.49 84.74 0.47 3.23 16 22 N -0.91 -55.26 13.98 21.59 0.30 -54.96 16 23 Si 0.91 41.20 27.73 68.60 1.90 43.11 16 24 H -0.25 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 26 H -0.22 -9.16 6.73 99.48 0.67 -8.49 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 2.25 7.38 -2.39 -0.02 2.23 16 29 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.44 8.08 8.82 -92.71 -0.82 7.26 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.15 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.28 15.65 8.32 -92.71 -0.77 14.87 16 Total: -1.00 -75.38 351.41 2.18 -73.21 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.25 Total: 16.83 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 5.48 Total: -27.36 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -3.32 Total: -93.07 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.04 Total: -21.15 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.90 Total: 43.11 kcal Atomic # 16 Polarization: 10.53 SS G_CDS: -2.09 Total: 8.44 kcal Total: -75.38 2.18 -73.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176744951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.826 kcal (2) G-P(sol) polarization free energy of solvation -75.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds