Wall clock time and date at job start Tue Mar 31 2020 13:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31589 * 122.23304 * 2 1 4 4 C 1.29944 * 117.14095 * 179.97438 * 3 2 1 5 5 N 1.38885 * 125.37054 * 180.02562 * 4 3 2 6 6 C 1.34769 * 120.00426 * 179.97438 * 5 4 3 7 7 O 1.21289 * 120.00269 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00316 * 180.02562 * 6 5 4 9 9 H 1.09005 * 115.54720 * 325.72870 * 8 6 5 10 10 C 1.52998 * 117.49748 * 111.38936 * 8 6 5 11 11 C 1.52994 * 117.50385 * 180.02562 * 8 6 5 12 12 H 1.09000 * 117.50311 * 145.01742 * 11 8 6 13 13 C 1.53007 * 117.49680 * 0.02562 * 11 8 6 14 14 C 1.53004 * 117.49881 * 128.74406 * 13 11 8 15 15 C 1.53001 * 117.49603 * 60.08550 * 13 11 8 16 16 S 1.76147 * 109.26831 * 359.73537 * 4 3 2 17 17 C 1.34661 * 122.22618 * 179.97438 * 2 1 3 18 18 S 1.76197 * 125.93489 * 0.03059 * 17 2 1 19 19 C 1.76199 * 100.00148 * 179.97438 * 18 17 2 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38431 * 119.99970 * 179.97438 * 19 18 17 22 22 N 1.31814 * 119.99809 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46755 * 90.00163 * 23 21 19 25 25 H 1.48499 * 109.47293 * 210.00173 * 23 21 19 26 26 H 1.48500 * 109.46738 * 330.00419 * 23 21 19 27 27 H 1.08996 * 109.47005 * 270.02753 * 1 2 3 28 28 H 1.08999 * 109.46865 * 30.02354 * 1 2 3 29 29 H 1.08999 * 109.47048 * 150.02479 * 1 2 3 30 30 H 0.97008 * 119.99638 * 0.02562 * 5 4 3 31 31 H 1.09000 * 117.49888 * 214.97969 * 10 8 6 32 32 H 1.08991 * 117.50189 * 359.97438 * 10 8 6 33 33 H 1.08994 * 115.55126 * 274.41602 * 13 11 8 34 34 H 1.08997 * 117.49797 * 0.02562 * 14 13 11 35 35 H 1.08995 * 117.49415 * 145.01902 * 14 13 11 36 36 H 1.09002 * 117.49428 * 214.97523 * 15 13 11 37 37 H 1.09004 * 117.50296 * 359.97438 * 15 13 11 38 38 H 0.96996 * 119.99557 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9978 0.0005 5 7 4.4045 2.0544 0.0011 6 6 5.7298 1.8098 0.0021 7 8 6.1356 0.6668 0.0021 8 6 6.7078 2.9564 0.0034 9 1 6.3950 3.8417 -0.5504 10 6 7.5417 3.1723 1.2678 11 6 8.1988 2.6134 0.0039 12 1 8.8672 3.2728 -0.5497 13 6 8.5829 1.1323 0.0025 14 6 9.5830 0.6629 -1.0559 15 6 8.1057 0.2799 -1.1751 16 16 3.9346 -0.7100 0.0088 17 6 2.2251 -1.1392 0.0005 18 16 1.5697 -2.7747 0.0005 19 6 3.0665 -3.7042 0.0005 20 1 4.0187 -3.1945 0.0010 21 6 3.0221 -5.0878 0.0011 22 7 1.8599 -5.7098 0.0010 23 14 4.6090 -6.0733 0.0004 24 1 5.0303 -6.3340 1.4003 25 1 4.3894 -7.3647 -0.6991 26 1 5.6687 -5.3046 -0.7005 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 4.0800 2.9686 0.0015 31 1 7.7780 4.1994 1.5456 32 1 7.3828 2.4853 2.0989 33 1 8.6270 0.6572 0.9825 34 1 9.9677 1.4092 -1.7510 35 1 10.2849 -0.1213 -0.7723 36 1 7.8364 -0.7562 -0.9698 37 1 7.5179 0.7741 -1.9486 38 1 1.8288 -6.6793 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176744964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:01 Heat of formation + Delta-G solvation = 39.642071 kcal Electronic energy + Delta-G solvation = -22253.403106 eV Core-core repulsion = 18928.848507 eV Total energy + Delta-G solvation = -3324.554599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.67780 -40.28915 -38.61961 -36.07117 -35.87298 -34.81848 -32.03689 -28.79735 -27.72756 -26.93404 -24.66099 -23.86075 -23.24644 -22.19308 -21.55418 -20.55065 -19.43825 -19.13122 -18.05998 -17.41360 -17.08033 -16.74191 -16.43859 -16.30905 -15.66108 -15.54341 -15.08797 -14.92559 -14.37777 -14.29120 -13.52720 -13.45737 -13.38518 -13.27333 -13.08258 -12.88561 -12.45332 -12.31757 -12.24009 -12.09175 -12.04678 -11.97320 -11.81335 -11.32379 -11.19590 -10.83251 -10.75138 -10.47628 -10.42648 -10.11431 -9.48545 -8.58035 -8.35045 -6.29820 -0.19344 0.25261 0.85346 1.22257 1.25904 1.32522 1.39704 1.52631 1.71144 2.02782 2.13898 2.67060 2.80992 3.09867 3.12496 3.46064 3.71438 3.81800 3.90977 3.98603 4.24032 4.28071 4.44458 4.45760 4.57181 4.73731 4.83763 4.85639 4.89410 4.93295 4.99661 5.11680 5.13830 5.25277 5.28934 5.33770 5.39474 5.49576 6.01563 6.05046 6.86626 6.88530 6.95351 8.49919 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.004600 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.430282 B = 6085.227619 C = 8203.035582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.489 5.489 4 C 0.232 3.768 5 N -0.605 5.605 6 C 0.522 3.478 7 O -0.513 6.513 8 C -0.182 4.182 9 H 0.165 0.835 10 C -0.128 4.128 11 C -0.085 4.085 12 H 0.146 0.854 13 C -0.116 4.116 14 C -0.176 4.176 15 C -0.146 4.146 16 S 0.163 5.837 17 C -0.287 4.287 18 S 0.094 5.906 19 C -0.573 4.573 20 H 0.080 0.920 21 C 0.036 3.964 22 N -0.896 5.896 23 Si 0.984 3.016 24 H -0.263 1.263 25 H -0.263 1.263 26 H -0.268 1.268 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.433 0.567 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.708 19.850 0.011 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.212 5.212 4 C -0.141 4.141 5 N -0.257 5.257 6 C 0.310 3.690 7 O -0.387 6.387 8 C -0.203 4.203 9 H 0.183 0.817 10 C -0.165 4.165 11 C -0.104 4.104 12 H 0.164 0.836 13 C -0.134 4.134 14 C -0.213 4.213 15 C -0.183 4.183 16 S 0.407 5.593 17 C -0.522 4.522 18 S 0.341 5.659 19 C -0.722 4.722 20 H 0.098 0.902 21 C -0.172 4.172 22 N -0.531 5.531 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.188 1.188 26 H -0.193 1.193 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.274 0.726 31 H 0.162 0.838 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.504 18.277 0.016 21.596 hybrid contribution 0.503 -0.280 -0.008 0.576 sum 12.007 17.997 0.008 21.635 Atomic orbital electron populations 1.20236 0.85841 1.03054 1.03011 1.19692 0.98376 0.84265 1.08051 1.66035 1.02873 1.31309 1.20960 1.24184 0.90174 0.93220 1.06485 1.42691 1.04149 1.07684 1.71138 1.20967 0.81254 0.91531 0.75210 1.90790 1.76382 1.24110 1.47453 1.22219 0.91662 0.98357 1.08016 0.81736 1.23217 0.98916 1.04441 0.89960 1.21982 0.91517 0.94816 1.02043 0.83643 1.21558 1.03759 0.93772 0.94314 1.23269 0.92256 1.03716 1.02057 1.22407 0.96070 0.99330 1.00512 1.85975 1.01937 0.97993 1.73346 1.28584 1.02031 1.05873 1.15745 1.82880 1.11284 0.86387 1.85364 1.23421 0.93810 0.94800 1.60151 0.90244 1.25864 1.01306 0.97420 0.92568 1.70096 1.26089 1.10695 1.46216 0.85156 0.77321 0.77688 0.79319 1.18832 1.18762 1.19267 0.90400 0.89552 0.91451 0.72594 0.83794 0.89654 0.89655 0.87128 0.89124 0.92106 0.90508 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.14 10.02 71.24 0.71 -1.43 16 2 C 0.04 1.57 6.73 41.78 0.28 1.85 16 3 N -0.49 -18.99 10.55 -184.86 -1.95 -20.94 16 4 C 0.23 8.59 8.40 179.15 1.50 10.09 16 5 N -0.60 -15.88 5.40 -309.58 -1.67 -17.56 16 6 C 0.52 13.13 7.41 87.66 0.65 13.78 16 7 O -0.51 -16.95 9.06 -3.06 -0.03 -16.98 16 8 C -0.18 -2.59 6.18 -11.54 -0.07 -2.66 16 9 H 0.17 1.17 8.14 -2.38 -0.02 1.15 16 10 C -0.13 -1.48 9.96 30.60 0.30 -1.18 16 11 C -0.09 -1.20 5.87 -10.79 -0.06 -1.27 16 12 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 13 C -0.12 -2.49 4.47 -10.79 -0.05 -2.54 16 14 C -0.18 -3.44 10.26 30.62 0.31 -3.13 16 15 C -0.15 -3.92 7.09 30.62 0.22 -3.70 16 16 S 0.16 7.27 18.35 -56.49 -1.04 6.23 16 17 C -0.29 -13.69 6.67 67.00 0.45 -13.24 16 18 S 0.09 4.98 20.74 -56.49 -1.17 3.81 16 19 C -0.57 -32.84 9.26 67.87 0.63 -32.21 16 20 H 0.08 4.54 5.97 -2.91 -0.02 4.53 16 21 C 0.04 1.97 5.49 84.74 0.47 2.44 16 22 N -0.90 -51.37 13.22 21.59 0.29 -51.08 16 23 Si 0.98 43.72 29.55 68.60 2.03 45.75 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.07 2.40 7.37 -2.39 -0.02 2.38 16 30 H 0.43 8.00 8.82 -92.70 -0.82 7.18 16 31 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 2.02 8.06 -2.39 -0.02 2.00 16 37 H 0.08 2.12 7.97 -2.39 -0.02 2.10 16 38 H 0.28 14.85 8.32 -92.71 -0.77 14.08 16 Total: -1.00 -70.95 345.79 2.08 -68.87 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.28 Total: 15.09 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 5.34 Total: -33.19 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -3.34 Total: -89.58 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.03 Total: -16.98 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 12.25 SS G_CDS: -2.21 Total: 10.04 kcal Total: -70.95 2.08 -68.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176744964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.512 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds