Wall clock time and date at job start Tue Mar 31 2020 13:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47110 * 2 1 4 4 C 1.53003 * 109.46961 * 240.00626 * 2 1 3 5 5 C 1.50695 * 109.47151 * 120.00618 * 2 1 3 6 6 C 1.33499 * 124.40226 * 59.99765 * 5 2 1 7 7 C 1.38239 * 115.07219 * 180.02562 * 6 5 2 8 8 N 1.39726 * 123.49767 * 180.02562 * 7 6 5 9 9 C 1.34772 * 119.99994 * 6.16101 * 8 7 6 10 10 O 1.21287 * 120.00526 * 354.62432 * 9 8 7 11 11 C 1.50703 * 119.99538 * 174.62364 * 9 8 7 12 12 S 1.81007 * 109.46807 * 179.97438 * 11 9 8 13 13 C 1.76198 * 99.99951 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.38801 * 120.00297 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00192 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99618 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46820 * 90.00191 * 17 15 13 19 19 H 1.48496 * 109.47033 * 210.00054 * 17 15 13 20 20 H 1.48499 * 109.47361 * 329.99967 * 17 15 13 21 21 C 1.37361 * 112.99806 * 0.26880 * 7 6 5 22 22 C 1.43198 * 125.48111 * 179.73627 * 21 7 6 23 23 N 6.48940 * 115.17465 * 107.89423 * 2 1 3 24 24 S 1.70571 * 124.39983 * 240.02427 * 5 2 1 25 25 H 1.08999 * 109.47062 * 299.99449 * 1 2 3 26 26 H 1.09004 * 109.47540 * 59.99349 * 1 2 3 27 27 H 1.08998 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47032 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47215 * 300.00680 * 3 2 1 30 30 H 1.08999 * 109.46708 * 60.00335 * 3 2 1 31 31 H 1.08998 * 109.46781 * 300.00072 * 4 2 1 32 32 H 1.09004 * 109.47405 * 59.99997 * 4 2 1 33 33 H 1.09004 * 109.47039 * 180.02562 * 4 2 1 34 34 H 1.07998 * 122.46312 * 0.04579 * 6 5 2 35 35 H 0.97001 * 119.99543 * 186.15742 * 8 7 6 36 36 H 1.09003 * 109.47244 * 60.00281 * 11 9 8 37 37 H 1.08999 * 109.47550 * 299.99626 * 11 9 8 38 38 H 0.97006 * 120.00090 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0323 -0.7105 1.2303 6 6 1.7644 -1.9840 1.5281 7 6 2.3243 -2.4403 2.7068 8 7 2.1582 -3.7421 3.1862 9 6 1.5255 -4.6624 2.4318 10 8 1.0150 -4.3379 1.3806 11 6 1.4523 -6.0948 2.8945 12 16 0.5451 -7.0772 1.6747 13 6 0.6105 -8.6598 2.4466 14 1 1.1124 -8.7773 3.3957 15 6 0.0171 -9.7554 1.8350 16 7 0.0655 -10.9375 2.4119 17 14 -0.8502 -9.5522 0.1930 18 1 0.1191 -9.7751 -0.9097 19 1 -1.9531 -10.5412 0.0901 20 1 -1.4061 -8.1788 0.0934 21 6 3.0565 -1.4793 3.3604 22 6 3.7445 -1.6606 4.6032 23 7 4.2904 -1.8045 5.5889 24 16 3.0165 0.0081 2.4238 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7488 -1.2494 32 1 1.6766 -0.2072 -2.1393 33 1 3.1300 -0.7215 -1.2491 34 1 1.1554 -2.6117 0.8946 35 1 2.4983 -3.9835 4.0620 36 1 0.9366 -6.1409 3.8538 37 1 2.4609 -6.4930 3.0048 38 1 -0.3489 -11.7032 1.9842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179549893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:34 Heat of formation + Delta-G solvation = 14.894279 kcal Electronic energy + Delta-G solvation = -21798.779596 eV Core-core repulsion = 18473.151852 eV Total energy + Delta-G solvation = -3325.627744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72110 -38.56955 -37.25812 -36.06794 -33.82635 -32.52245 -29.95205 -29.18354 -27.75546 -27.48963 -25.73663 -24.73274 -22.15861 -20.81681 -20.13324 -18.33420 -18.08579 -17.18648 -16.14710 -15.74177 -15.65076 -15.10116 -14.92354 -14.75251 -14.16147 -14.15898 -13.98166 -13.90554 -13.70418 -13.06314 -13.02949 -12.88215 -12.62514 -12.59176 -12.35963 -12.15932 -11.95424 -11.56938 -11.40006 -11.36342 -11.33494 -11.08384 -10.91310 -10.70444 -10.65400 -9.95038 -9.64665 -9.08672 -8.79994 -8.65422 -8.10278 -7.04223 -6.36504 -4.10537 0.22985 0.98504 1.61059 2.06562 2.46509 2.67980 2.74120 3.10475 3.21162 3.26580 3.42012 3.47849 3.80499 4.13170 4.24709 4.46849 4.53736 4.61235 4.83482 5.00887 5.02368 5.09358 5.23600 5.33902 5.39936 5.48155 5.54561 5.56057 5.64583 5.69545 5.72004 5.76119 5.86883 5.96206 6.04593 6.13448 6.45713 7.10154 7.30960 7.86152 7.99239 8.34384 9.08685 10.72673 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.003286 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.079524 B = 8518.925116 C =10105.303728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.001 3.999 3 C -0.155 4.155 4 C -0.140 4.140 5 C -0.158 4.158 6 C -0.168 4.168 7 C 0.238 3.762 8 N -0.655 5.655 9 C 0.537 3.463 10 O -0.486 6.486 11 C -0.127 4.127 12 S -0.133 6.133 13 C -0.525 4.525 14 H 0.090 0.910 15 C 0.097 3.903 16 N -0.878 5.878 17 Si 0.857 3.143 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.235 1.235 21 C -0.250 4.250 22 C 0.288 3.712 23 N -0.419 5.419 24 S 0.242 5.758 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.191 0.809 35 H 0.415 0.585 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 25.410 -4.195 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.001 4.001 3 C -0.213 4.213 4 C -0.198 4.198 5 C -0.279 4.279 6 C -0.200 4.200 7 C 0.122 3.878 8 N -0.298 5.298 9 C 0.325 3.675 10 O -0.358 6.358 11 C -0.278 4.278 12 S 0.093 5.907 13 C -0.672 4.672 14 H 0.108 0.892 15 C -0.112 4.112 16 N -0.514 5.514 17 Si 0.681 3.319 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.159 1.159 21 C -0.375 4.375 22 C -0.027 4.027 23 N -0.097 5.097 24 S 0.509 5.491 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.208 0.792 35 H 0.252 0.748 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.468 26.856 -4.210 27.549 hybrid contribution -0.362 -2.229 0.621 2.342 sum 4.106 24.627 -3.589 25.224 Atomic orbital electron populations 1.21919 0.92485 1.03198 1.02125 1.19194 0.96358 0.94187 0.90347 1.22031 1.01541 0.94797 1.02945 1.21927 1.01377 1.01099 0.95372 1.24244 1.03249 0.98593 1.01802 1.20642 1.05378 0.96011 0.97923 1.17201 0.93410 0.84162 0.92984 1.43478 1.57258 1.07669 1.21441 1.20620 0.76242 0.87000 0.83644 1.90524 1.42851 1.79849 1.22570 1.23323 1.06444 0.92451 1.05559 1.84756 1.70971 1.05747 1.29206 1.22284 1.42890 0.91403 1.10650 0.89229 1.24711 0.94703 0.94066 0.97758 1.69930 1.42954 0.99529 1.38954 0.86742 0.80516 0.80786 0.83833 1.19126 1.19826 1.15911 1.19774 1.16681 1.01452 0.99544 1.24182 0.92698 0.94473 0.91329 1.81318 1.10597 1.06704 1.11118 1.82886 1.46990 1.08135 1.11039 0.92278 0.91802 0.91455 0.91918 0.91056 0.91921 0.91389 0.91806 0.92268 0.79233 0.74847 0.87705 0.87686 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.32 37.16 0.31 -0.74 16 2 C 0.00 0.01 0.90 -155.66 -0.14 -0.13 16 3 C -0.16 -0.89 7.52 37.16 0.28 -0.61 16 4 C -0.14 -1.08 8.33 37.16 0.31 -0.77 16 5 C -0.16 -1.49 4.96 -35.97 -0.18 -1.67 16 6 C -0.17 -2.00 8.11 -41.24 -0.33 -2.34 16 7 C 0.24 2.91 6.64 -84.58 -0.56 2.35 16 8 N -0.66 -8.31 5.40 -10.42 -0.06 -8.36 16 9 C 0.54 8.50 7.80 -10.99 -0.09 8.42 16 10 O -0.49 -8.76 12.64 5.55 0.07 -8.69 16 11 C -0.13 -2.25 6.16 36.01 0.22 -2.02 16 12 S -0.13 -3.13 18.55 -107.50 -1.99 -5.13 16 13 C -0.52 -14.52 10.04 30.94 0.31 -14.21 16 14 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 15 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 16 N -0.88 -25.88 13.97 55.49 0.78 -25.11 16 17 Si 0.86 20.91 27.74 -169.99 -4.72 16.20 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 21 C -0.25 -2.76 6.35 -37.98 -0.24 -3.00 16 22 C 0.29 3.52 15.22 -22.47 -0.34 3.17 16 23 N -0.42 -5.82 18.54 41.84 0.78 -5.05 16 24 S 0.24 2.05 21.31 -107.50 -2.29 -0.24 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.60 7.84 -51.93 -0.41 0.20 16 28 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 31 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.19 2.64 5.03 -52.53 -0.26 2.38 16 35 H 0.42 4.45 8.22 -40.82 -0.34 4.11 16 36 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 37 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -31.35 353.00 -7.43 -38.79 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.77 Total: 1.18 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.55 Total: -8.91 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 1.49 Total: -38.52 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.72 Total: 16.20 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -4.28 Total: -5.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.35 -7.43 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179549893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.684 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds