Wall clock time and date at job start Tue Mar 31 2020 13:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47110 * 2 1 4 4 C 1.53003 * 109.46961 * 240.00626 * 2 1 3 5 5 C 1.50695 * 109.47151 * 120.00618 * 2 1 3 6 6 C 1.33499 * 124.40226 * 59.99765 * 5 2 1 7 7 C 1.38239 * 115.07219 * 180.02562 * 6 5 2 8 8 N 1.39726 * 123.49767 * 180.02562 * 7 6 5 9 9 C 1.34772 * 119.99994 * 6.16101 * 8 7 6 10 10 O 1.21287 * 120.00526 * 354.62432 * 9 8 7 11 11 C 1.50703 * 119.99538 * 174.62364 * 9 8 7 12 12 S 1.81007 * 109.46807 * 179.97438 * 11 9 8 13 13 C 1.76198 * 99.99951 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.38801 * 120.00297 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00192 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99618 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46820 * 90.00191 * 17 15 13 19 19 H 1.48496 * 109.47033 * 210.00054 * 17 15 13 20 20 H 1.48499 * 109.47361 * 329.99967 * 17 15 13 21 21 C 1.37361 * 112.99806 * 0.26880 * 7 6 5 22 22 C 1.43198 * 125.48111 * 179.73627 * 21 7 6 23 23 N 6.48940 * 115.17465 * 107.89423 * 2 1 3 24 24 S 1.70571 * 124.39983 * 240.02427 * 5 2 1 25 25 H 1.08999 * 109.47062 * 299.99449 * 1 2 3 26 26 H 1.09004 * 109.47540 * 59.99349 * 1 2 3 27 27 H 1.08998 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47032 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47215 * 300.00680 * 3 2 1 30 30 H 1.08999 * 109.46708 * 60.00335 * 3 2 1 31 31 H 1.08998 * 109.46781 * 300.00072 * 4 2 1 32 32 H 1.09004 * 109.47405 * 59.99997 * 4 2 1 33 33 H 1.09004 * 109.47039 * 180.02562 * 4 2 1 34 34 H 1.07998 * 122.46312 * 0.04579 * 6 5 2 35 35 H 0.97001 * 119.99543 * 186.15742 * 8 7 6 36 36 H 1.09003 * 109.47244 * 60.00281 * 11 9 8 37 37 H 1.08999 * 109.47550 * 299.99626 * 11 9 8 38 38 H 0.97006 * 120.00090 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0323 -0.7105 1.2303 6 6 1.7644 -1.9840 1.5281 7 6 2.3243 -2.4403 2.7068 8 7 2.1582 -3.7421 3.1862 9 6 1.5255 -4.6624 2.4318 10 8 1.0150 -4.3379 1.3806 11 6 1.4523 -6.0948 2.8945 12 16 0.5451 -7.0772 1.6747 13 6 0.6105 -8.6598 2.4466 14 1 1.1124 -8.7773 3.3957 15 6 0.0171 -9.7554 1.8350 16 7 0.0655 -10.9375 2.4119 17 14 -0.8502 -9.5522 0.1930 18 1 0.1191 -9.7751 -0.9097 19 1 -1.9531 -10.5412 0.0901 20 1 -1.4061 -8.1788 0.0934 21 6 3.0565 -1.4793 3.3604 22 6 3.7445 -1.6606 4.6032 23 7 4.2904 -1.8045 5.5889 24 16 3.0165 0.0081 2.4238 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7488 -1.2494 32 1 1.6766 -0.2072 -2.1393 33 1 3.1300 -0.7215 -1.2491 34 1 1.1554 -2.6117 0.8946 35 1 2.4983 -3.9835 4.0620 36 1 0.9366 -6.1409 3.8538 37 1 2.4609 -6.4930 3.0048 38 1 -0.3489 -11.7032 1.9842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179549893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:33 Heat of formation + Delta-G solvation = -3.395099 kcal Electronic energy + Delta-G solvation = -21799.572683 eV Core-core repulsion = 18473.151852 eV Total energy + Delta-G solvation = -3326.420831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81321 -39.46771 -38.17527 -37.03856 -34.87253 -34.67895 -31.20013 -30.19178 -28.25924 -28.08835 -27.89044 -25.63465 -23.23761 -21.76166 -21.00304 -20.04133 -18.98223 -18.58054 -17.20516 -17.10111 -16.91067 -16.53865 -15.94427 -15.70570 -15.57870 -15.13410 -14.95580 -14.89809 -14.79369 -14.62942 -14.15089 -13.93023 -13.57270 -13.54494 -13.34427 -13.04370 -12.98709 -12.86783 -12.75899 -12.52103 -12.29077 -12.02641 -11.99084 -11.87586 -11.56740 -11.55297 -11.17612 -10.87538 -10.59137 -9.63446 -9.05111 -8.93716 -8.52151 -6.23852 -0.66196 0.15640 0.75989 0.94654 1.02958 1.32606 1.43113 1.51431 1.57557 1.71625 2.03376 2.23548 2.24296 2.63868 2.86429 2.87265 3.33643 3.65328 3.93572 4.05955 4.10521 4.12797 4.29061 4.38933 4.56176 4.76265 4.82231 4.83339 4.93346 4.96751 5.06433 5.09010 5.18809 5.34492 5.44963 5.46393 5.50472 5.69571 6.06750 6.11390 6.34072 6.79858 6.92412 8.60387 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.003286 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.079524 B = 8518.925116 C =10105.303728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.001 4.001 3 C -0.156 4.156 4 C -0.139 4.139 5 C -0.152 4.152 6 C -0.191 4.191 7 C 0.222 3.778 8 N -0.643 5.643 9 C 0.545 3.455 10 O -0.511 6.511 11 C -0.117 4.117 12 S -0.154 6.154 13 C -0.533 4.533 14 H 0.061 0.939 15 C 0.044 3.956 16 N -0.918 5.918 17 Si 0.915 3.085 18 H -0.261 1.261 19 H -0.261 1.261 20 H -0.231 1.231 21 C -0.260 4.260 22 C 0.304 3.696 23 N -0.449 5.449 24 S 0.321 5.679 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.169 0.831 35 H 0.425 0.575 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 28.565 -5.161 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.003 4.003 3 C -0.213 4.213 4 C -0.197 4.197 5 C -0.273 4.273 6 C -0.222 4.222 7 C 0.106 3.894 8 N -0.287 5.287 9 C 0.332 3.668 10 O -0.385 6.385 11 C -0.268 4.268 12 S 0.072 5.928 13 C -0.681 4.681 14 H 0.079 0.921 15 C -0.161 4.161 16 N -0.556 5.556 17 Si 0.737 3.263 18 H -0.186 1.186 19 H -0.186 1.186 20 H -0.155 1.155 21 C -0.384 4.384 22 C -0.010 4.010 23 N -0.129 5.129 24 S 0.590 5.410 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.186 0.814 35 H 0.262 0.738 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.812 30.044 -5.144 30.859 hybrid contribution -0.371 -3.020 0.977 3.196 sum 4.441 27.024 -4.166 27.702 Atomic orbital electron populations 1.21916 0.92453 1.02138 1.03162 1.19327 0.96398 0.95316 0.89268 1.22062 1.01946 0.93155 1.04170 1.21923 1.01490 1.00072 0.96244 1.24593 1.02177 0.97999 1.02519 1.20416 1.06652 0.96968 0.98152 1.17253 0.94637 0.83847 0.93622 1.43139 1.56503 1.07664 1.21376 1.20133 0.76558 0.86567 0.83519 1.90552 1.44212 1.80108 1.23665 1.23288 1.06332 0.92946 1.04192 1.84573 1.72590 1.04227 1.31398 1.22477 1.41995 0.93789 1.09825 0.92060 1.25601 0.95487 0.93807 1.01200 1.70021 1.44338 1.00480 1.40783 0.85856 0.79781 0.81100 0.79584 1.18597 1.18557 1.15485 1.19963 1.16307 1.02826 0.99316 1.24248 0.92035 0.93573 0.91151 1.81339 1.11716 1.07734 1.12061 1.82670 1.44548 1.05272 1.08529 0.91895 0.90133 0.93577 0.91298 0.89491 0.91193 0.93624 0.90106 0.92047 0.81431 0.73757 0.86211 0.86359 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.32 71.98 0.60 -1.26 16 2 C 0.00 -0.01 0.90 -52.93 -0.05 -0.06 16 3 C -0.16 -1.22 7.52 71.98 0.54 -0.68 16 4 C -0.14 -1.93 8.33 71.98 0.60 -1.34 16 5 C -0.15 -2.57 4.96 24.61 0.12 -2.45 16 6 C -0.19 -4.43 8.11 21.20 0.17 -4.25 16 7 C 0.22 5.19 6.64 37.68 0.25 5.44 16 8 N -0.64 -15.85 5.40 -305.27 -1.65 -17.50 16 9 C 0.55 17.10 7.80 87.66 0.68 17.79 16 10 O -0.51 -18.60 12.64 -3.05 -0.04 -18.64 16 11 C -0.12 -4.09 6.16 71.24 0.44 -3.65 16 12 S -0.15 -7.30 18.55 -56.49 -1.05 -8.35 16 13 C -0.53 -30.12 10.04 67.95 0.68 -29.44 16 14 H 0.06 3.68 8.03 -2.91 -0.02 3.66 16 15 C 0.04 2.55 5.50 84.86 0.47 3.02 16 16 N -0.92 -55.26 13.97 21.65 0.30 -54.95 16 17 Si 0.92 43.42 27.74 68.60 1.90 45.32 16 18 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.23 -10.73 6.74 99.48 0.67 -10.06 16 21 C -0.26 -5.25 6.35 23.31 0.15 -5.10 16 22 C 0.30 6.94 15.22 88.33 1.34 8.29 16 23 N -0.45 -11.97 18.54 19.00 0.35 -11.61 16 24 S 0.32 4.48 21.31 -56.49 -1.20 3.27 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.82 7.84 -2.39 -0.02 0.80 16 28 H 0.07 0.48 7.90 -2.39 -0.02 0.46 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.47 7.90 -2.39 -0.02 0.45 16 31 H 0.04 0.84 7.84 -2.39 -0.02 0.82 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.17 4.79 5.03 -3.61 -0.02 4.77 16 35 H 0.42 8.69 8.22 -92.71 -0.76 7.93 16 36 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 37 H 0.12 3.84 8.14 -2.40 -0.02 3.82 16 38 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -68.75 353.00 4.92 -63.83 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.30 Total: 12.32 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 6.00 Total: -13.69 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -0.99 Total: -84.07 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.04 Total: -18.64 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.90 Total: 45.32 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.25 Total: -5.07 kcal Total: -68.75 4.92 -63.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179549893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.435 kcal (2) G-P(sol) polarization free energy of solvation -68.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds