Wall clock time and date at job start Tue Mar 31 2020 14:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39748 * 120.07356 * 235.34386 * 3 2 1 5 5 C 1.37828 * 120.03916 * 180.02562 * 4 3 2 6 6 C 1.38779 * 120.17212 * 0.02562 * 5 4 3 7 7 O 1.35826 * 119.92989 * 179.97438 * 6 5 4 8 8 C 1.39531 * 120.13557 * 0.02562 * 6 5 4 9 9 N 1.40066 * 120.01425 * 179.97438 * 8 6 5 10 10 C 1.34785 * 119.99551 * 205.09986 * 9 8 6 11 11 O 1.21611 * 119.99849 * 5.56101 * 10 9 8 12 12 C 1.47501 * 119.99701 * 185.56093 * 10 9 8 13 13 C 1.39677 * 120.20081 * 359.97438 * 12 10 9 14 14 C 1.37832 * 119.91888 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.32378 * 359.97438 * 14 13 12 16 16 C 1.38029 * 120.40473 * 0.02562 * 15 14 13 17 17 C 1.38833 * 120.07285 * 0.02562 * 16 15 14 18 18 O 1.35517 * 120.15920 * 179.97438 * 17 16 15 19 19 C 1.34807 * 117.00078 * 354.84183 * 18 17 16 20 20 H 1.08001 * 120.00434 * 5.01336 * 19 18 17 21 21 C 1.38701 * 119.99848 * 185.01665 * 19 18 17 22 22 N 1.31525 * 119.99727 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00318 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46938 * 89.99914 * 23 21 19 25 25 H 1.48493 * 109.47305 * 210.00301 * 23 21 19 26 26 H 1.48508 * 109.46799 * 330.00478 * 23 21 19 27 27 C 1.38347 * 119.96472 * 0.24809 * 8 6 5 28 28 H 1.08004 * 119.97574 * 0.03006 * 4 3 2 29 29 H 1.08002 * 119.91351 * 179.97438 * 5 4 3 30 30 H 0.96703 * 114.00137 * 270.01711 * 7 6 5 31 31 H 0.96991 * 120.00346 * 25.10013 * 9 8 6 32 32 H 1.07995 * 120.04111 * 359.96032 * 13 12 10 33 33 H 1.08003 * 119.83628 * 180.02562 * 14 13 12 34 34 H 1.08002 * 119.79759 * 180.02562 * 15 14 13 35 35 H 1.07995 * 119.96421 * 179.72244 * 16 15 14 36 36 H 0.97004 * 119.99417 * 179.97438 * 22 21 19 37 37 H 1.08002 * 120.08424 * 179.73000 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 0.6887 0.9948 5 6 4.6463 0.6892 0.9938 6 6 5.3434 0.0079 0.0059 7 8 6.7016 0.0122 0.0094 8 6 4.6518 -0.6805 -0.9914 9 7 5.3579 -1.3668 -1.9875 10 6 4.7843 -1.5925 -3.1861 11 8 3.6952 -1.1140 -3.4387 12 6 5.4776 -2.4197 -4.1914 13 6 6.7289 -2.9708 -3.9059 14 6 7.3714 -3.7434 -4.8493 15 6 6.7818 -3.9773 -6.0814 16 6 5.5457 -3.4393 -6.3777 17 6 4.8842 -2.6577 -5.4401 18 8 3.6708 -2.1282 -5.7294 19 6 3.2075 -2.3081 -6.9825 20 1 3.7591 -2.9218 -7.6793 21 6 2.0224 -1.7051 -7.3769 22 7 1.5707 -1.8802 -8.5997 23 14 1.0678 -0.6442 -6.1716 24 1 1.5296 0.7633 -6.2776 25 1 -0.3810 -0.7151 -6.4894 26 1 1.2963 -1.1374 -4.7896 27 6 3.2683 -0.6801 -0.9991 28 1 2.7286 1.2202 1.7648 29 1 5.1852 1.2220 1.7633 30 1 7.0940 0.7405 -0.4914 31 1 6.2596 -1.6797 -1.8147 32 1 7.1925 -2.7916 -2.9471 33 1 8.3387 -4.1692 -4.6269 34 1 7.2926 -4.5843 -6.8142 35 1 5.0947 -3.6225 -7.3418 36 1 0.7416 -1.4587 -8.8754 37 1 2.7311 -1.2087 -1.7726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179730656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:15 Heat of formation + Delta-G solvation = -7.241279 kcal Electronic energy + Delta-G solvation = -26073.361276 eV Core-core repulsion = 22168.576840 eV Total energy + Delta-G solvation = -3904.784436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87918 -39.63000 -38.35789 -37.48349 -36.69070 -35.96261 -34.57117 -32.56902 -31.33513 -30.58914 -29.36759 -29.15644 -25.47129 -24.15625 -23.86529 -22.67948 -21.42476 -20.31592 -19.35333 -18.81348 -18.02950 -17.87770 -16.70652 -16.29210 -15.92675 -15.66901 -14.93503 -14.78656 -14.55914 -14.35455 -14.03739 -13.95320 -13.81245 -13.70846 -13.61253 -13.19791 -13.07084 -12.49173 -12.37869 -12.27249 -12.22789 -12.13743 -11.54705 -11.39774 -11.11066 -10.96653 -10.81385 -10.50708 -10.14824 -9.74613 -9.28789 -8.99235 -8.94758 -8.57004 -8.13875 -7.61180 -6.57864 -4.23043 0.48580 1.04475 1.44556 2.06556 2.61804 2.68709 3.08556 3.25093 3.29899 3.32795 3.56830 3.64328 3.80152 3.95226 4.25000 4.36120 4.57978 4.62280 4.86389 4.98174 5.00793 5.13216 5.24606 5.28848 5.51036 5.63748 5.73395 5.82775 5.89870 6.01052 6.08698 6.23143 6.26286 6.41452 6.66904 6.68605 6.87231 7.02645 7.31124 7.35040 7.44400 7.48550 7.62069 7.83288 8.45625 8.76585 9.37368 10.46728 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.005121 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.264606 B = 5465.977390 C = 7925.009274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.259 3.741 3 C -0.015 4.015 4 C -0.084 4.084 5 C -0.123 4.123 6 C 0.093 3.907 7 O -0.493 6.493 8 C 0.146 3.854 9 N -0.673 5.673 10 C 0.560 3.440 11 O -0.497 6.497 12 C -0.233 4.233 13 C -0.038 4.038 14 C -0.219 4.219 15 C -0.047 4.047 16 C -0.225 4.225 17 C 0.203 3.797 18 O -0.163 6.163 19 C -0.397 4.397 20 H 0.110 0.890 21 C 0.074 3.926 22 N -0.864 5.864 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.239 1.239 27 C -0.076 4.076 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.393 0.607 31 H 0.413 0.587 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.283 0.717 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.595 2.801 16.006 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.057 4.057 3 C -0.019 4.019 4 C -0.105 4.105 5 C -0.142 4.142 6 C 0.045 3.955 7 O -0.303 6.303 8 C 0.049 3.951 9 N -0.319 5.319 10 C 0.353 3.647 11 O -0.372 6.372 12 C -0.238 4.238 13 C -0.056 4.056 14 C -0.238 4.238 15 C -0.065 4.065 16 C -0.244 4.244 17 C 0.144 3.856 18 O -0.062 6.062 19 C -0.471 4.471 20 H 0.127 0.873 21 C -0.133 4.133 22 N -0.499 5.499 23 Si 0.723 3.277 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.162 1.162 27 C -0.099 4.099 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.249 0.751 31 H 0.251 0.749 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.094 0.906 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.608 2.770 16.008 18.875 hybrid contribution 0.666 0.601 -0.121 0.905 sum 10.274 3.372 15.887 19.218 Atomic orbital electron populations 1.81237 1.12018 1.08131 1.07745 1.25580 0.92563 0.93838 0.93702 1.15889 0.84549 1.03284 0.98178 1.20928 0.93571 0.98556 0.97478 1.21050 0.93639 1.00093 0.99415 1.18296 0.83191 0.98277 0.95772 1.84772 1.15436 1.54118 1.76012 1.17918 0.91173 0.96326 0.89661 1.43539 1.19234 1.56939 1.12229 1.18428 0.85583 0.80148 0.80560 1.90840 1.20112 1.48564 1.77647 1.18602 0.98530 1.11768 0.94937 1.20770 0.92286 0.94653 0.97923 1.20557 1.01551 1.06445 0.95293 1.21012 0.93928 0.95729 0.95852 1.21301 0.97384 1.03960 1.01710 1.18973 0.84635 0.90427 0.91534 1.83750 1.26458 1.64113 1.31902 1.20935 1.08211 1.32380 0.85618 0.87261 1.24504 0.96021 0.96494 0.96247 1.69632 1.21831 1.41729 1.16663 0.86227 0.77672 0.80606 0.83178 1.19796 1.21068 1.16226 1.21532 0.92479 0.98127 0.97716 0.84646 0.84108 0.75054 0.74888 0.86695 0.86771 0.86645 0.84263 0.90637 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.97 18.54 41.84 0.78 -6.19 16 2 C 0.26 3.77 15.32 -22.47 -0.34 3.43 16 3 C -0.01 -0.19 5.74 -106.86 -0.61 -0.80 16 4 C -0.08 -0.76 9.74 -39.17 -0.38 -1.14 16 5 C -0.12 -1.00 9.96 -39.53 -0.39 -1.40 16 6 C 0.09 0.91 6.73 -38.90 -0.26 0.65 16 7 O -0.49 -3.80 12.90 -19.19 -0.25 -4.05 16 8 C 0.15 1.88 6.44 -83.57 -0.54 1.34 16 9 N -0.67 -9.00 5.22 -10.73 -0.06 -9.06 16 10 C 0.56 10.18 7.57 -12.48 -0.09 10.09 16 11 O -0.50 -11.07 12.33 -16.59 -0.20 -11.28 16 12 C -0.23 -4.31 5.89 -104.82 -0.62 -4.93 16 13 C -0.04 -0.54 9.53 -39.19 -0.37 -0.91 16 14 C -0.22 -3.08 10.03 -39.61 -0.40 -3.48 16 15 C -0.05 -0.73 10.03 -39.53 -0.40 -1.13 16 16 C -0.22 -4.43 9.16 -39.44 -0.36 -4.79 16 17 C 0.20 4.46 6.66 -38.59 -0.26 4.21 16 18 O -0.16 -4.23 6.67 -21.03 -0.14 -4.37 16 19 C -0.40 -10.90 9.95 30.90 0.31 -10.59 16 20 H 0.11 2.99 5.43 -52.49 -0.29 2.70 16 21 C 0.07 2.06 5.49 -17.51 -0.10 1.97 16 22 N -0.86 -24.51 13.96 55.48 0.77 -23.74 16 23 Si 0.90 22.77 28.62 -169.99 -4.86 17.90 16 24 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.24 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.08 -1.10 8.42 -38.99 -0.33 -1.43 16 28 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.39 1.51 9.06 45.56 0.41 1.92 16 31 H 0.41 4.30 6.39 -40.82 -0.26 4.04 16 32 H 0.12 1.19 6.42 -52.49 -0.34 0.85 16 33 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.14 2.87 5.63 -52.49 -0.30 2.58 16 36 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.16 2.91 5.78 -52.49 -0.30 2.60 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -33.10 335.46 -5.95 -39.05 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -1.89 Total: 5.60 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -5.15 Total: -8.92 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 1.49 Total: -38.98 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.59 Total: -19.70 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.86 Total: 17.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.10 -5.95 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179730656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.807 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds