Wall clock time and date at job start Tue Mar 31 2020 14:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39748 * 120.07356 * 235.34386 * 3 2 1 5 5 C 1.37828 * 120.03916 * 180.02562 * 4 3 2 6 6 C 1.38779 * 120.17212 * 0.02562 * 5 4 3 7 7 O 1.35826 * 119.92989 * 179.97438 * 6 5 4 8 8 C 1.39531 * 120.13557 * 0.02562 * 6 5 4 9 9 N 1.40066 * 120.01425 * 179.97438 * 8 6 5 10 10 C 1.34785 * 119.99551 * 205.09986 * 9 8 6 11 11 O 1.21611 * 119.99849 * 5.56101 * 10 9 8 12 12 C 1.47501 * 119.99701 * 185.56093 * 10 9 8 13 13 C 1.39677 * 120.20081 * 359.97438 * 12 10 9 14 14 C 1.37832 * 119.91888 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.32378 * 359.97438 * 14 13 12 16 16 C 1.38029 * 120.40473 * 0.02562 * 15 14 13 17 17 C 1.38833 * 120.07285 * 0.02562 * 16 15 14 18 18 O 1.35517 * 120.15920 * 179.97438 * 17 16 15 19 19 C 1.34807 * 117.00078 * 354.84183 * 18 17 16 20 20 H 1.08001 * 120.00434 * 5.01336 * 19 18 17 21 21 C 1.38701 * 119.99848 * 185.01665 * 19 18 17 22 22 N 1.31525 * 119.99727 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00318 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46938 * 89.99914 * 23 21 19 25 25 H 1.48493 * 109.47305 * 210.00301 * 23 21 19 26 26 H 1.48508 * 109.46799 * 330.00478 * 23 21 19 27 27 C 1.38347 * 119.96472 * 0.24809 * 8 6 5 28 28 H 1.08004 * 119.97574 * 0.03006 * 4 3 2 29 29 H 1.08002 * 119.91351 * 179.97438 * 5 4 3 30 30 H 0.96703 * 114.00137 * 270.01711 * 7 6 5 31 31 H 0.96991 * 120.00346 * 25.10013 * 9 8 6 32 32 H 1.07995 * 120.04111 * 359.96032 * 13 12 10 33 33 H 1.08003 * 119.83628 * 180.02562 * 14 13 12 34 34 H 1.08002 * 119.79759 * 180.02562 * 15 14 13 35 35 H 1.07995 * 119.96421 * 179.72244 * 16 15 14 36 36 H 0.97004 * 119.99417 * 179.97438 * 22 21 19 37 37 H 1.08002 * 120.08424 * 179.73000 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 0.6887 0.9948 5 6 4.6463 0.6892 0.9938 6 6 5.3434 0.0079 0.0059 7 8 6.7016 0.0122 0.0094 8 6 4.6518 -0.6805 -0.9914 9 7 5.3579 -1.3668 -1.9875 10 6 4.7843 -1.5925 -3.1861 11 8 3.6952 -1.1140 -3.4387 12 6 5.4776 -2.4197 -4.1914 13 6 6.7289 -2.9708 -3.9059 14 6 7.3714 -3.7434 -4.8493 15 6 6.7818 -3.9773 -6.0814 16 6 5.5457 -3.4393 -6.3777 17 6 4.8842 -2.6577 -5.4401 18 8 3.6708 -2.1282 -5.7294 19 6 3.2075 -2.3081 -6.9825 20 1 3.7591 -2.9218 -7.6793 21 6 2.0224 -1.7051 -7.3769 22 7 1.5707 -1.8802 -8.5997 23 14 1.0678 -0.6442 -6.1716 24 1 1.5296 0.7633 -6.2776 25 1 -0.3810 -0.7151 -6.4894 26 1 1.2963 -1.1374 -4.7896 27 6 3.2683 -0.6801 -0.9991 28 1 2.7286 1.2202 1.7648 29 1 5.1852 1.2220 1.7633 30 1 7.0940 0.7405 -0.4914 31 1 6.2596 -1.6797 -1.8147 32 1 7.1925 -2.7916 -2.9471 33 1 8.3387 -4.1692 -4.6269 34 1 7.2926 -4.5843 -6.8142 35 1 5.0947 -3.6225 -7.3418 36 1 0.7416 -1.4587 -8.8754 37 1 2.7311 -1.2087 -1.7726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179730656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:15 Heat of formation + Delta-G solvation = -31.110756 kcal Electronic energy + Delta-G solvation = -26074.396334 eV Core-core repulsion = 22168.576840 eV Total energy + Delta-G solvation = -3905.819494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01871 -40.95822 -39.69806 -38.39795 -38.20514 -36.98976 -35.79328 -34.55488 -32.60996 -31.49577 -30.82461 -30.24737 -27.34741 -25.39515 -24.80271 -23.83809 -22.85354 -21.60600 -20.49152 -19.85101 -19.60174 -19.19285 -18.12946 -17.43719 -16.93750 -16.60015 -16.48327 -16.21515 -15.89465 -15.79123 -15.48907 -15.44228 -15.08012 -14.86975 -14.68296 -14.47465 -14.28271 -14.21296 -14.07354 -13.37071 -13.29610 -13.14212 -13.08752 -12.82450 -12.62994 -12.41977 -12.09751 -11.91294 -11.62002 -11.47460 -11.01101 -10.68602 -9.95715 -9.84681 -9.23989 -9.05866 -8.62355 -6.30158 -0.41358 -0.09329 0.32060 0.63542 1.20420 1.23350 1.47563 1.51031 1.65869 1.95385 1.99325 2.21900 2.68323 2.74348 2.78731 2.97552 3.12323 3.18008 3.72681 3.88503 3.97991 4.07168 4.22589 4.29298 4.38752 4.46813 4.58232 4.76216 4.80570 4.91590 5.04484 5.15114 5.24986 5.26894 5.36981 5.45834 5.59399 5.68129 5.71517 5.80404 6.12993 6.31960 6.43055 6.75009 6.78756 7.17474 7.54166 8.48055 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.005121 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.264606 B = 5465.977390 C = 7925.009274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.276 3.724 3 C -0.035 4.035 4 C -0.057 4.057 5 C -0.109 4.109 6 C 0.125 3.875 7 O -0.489 6.489 8 C 0.117 3.883 9 N -0.650 5.650 10 C 0.556 3.444 11 O -0.546 6.546 12 C -0.235 4.235 13 C -0.026 4.026 14 C -0.187 4.187 15 C -0.038 4.038 16 C -0.251 4.251 17 C 0.165 3.835 18 O -0.209 6.209 19 C -0.399 4.399 20 H 0.095 0.905 21 C 0.030 3.970 22 N -0.909 5.909 23 Si 0.948 3.052 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.266 1.266 27 C -0.098 4.098 28 H 0.168 0.832 29 H 0.185 0.815 30 H 0.416 0.584 31 H 0.430 0.570 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.151 0.849 35 H 0.115 0.885 36 H 0.285 0.715 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.921 3.204 20.350 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.038 4.038 3 C -0.039 4.039 4 C -0.078 4.078 5 C -0.127 4.127 6 C 0.076 3.924 7 O -0.303 6.303 8 C 0.021 3.979 9 N -0.298 5.298 10 C 0.348 3.652 11 O -0.424 6.424 12 C -0.239 4.239 13 C -0.045 4.045 14 C -0.206 4.206 15 C -0.057 4.057 16 C -0.270 4.270 17 C 0.112 3.888 18 O -0.113 6.113 19 C -0.475 4.475 20 H 0.112 0.888 21 C -0.170 4.170 22 N -0.549 5.549 23 Si 0.773 3.227 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.191 1.191 27 C -0.121 4.121 28 H 0.186 0.814 29 H 0.202 0.798 30 H 0.277 0.723 31 H 0.271 0.729 32 H 0.186 0.814 33 H 0.186 0.814 34 H 0.169 0.831 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.028 3.173 20.411 25.544 hybrid contribution -0.395 0.355 -1.102 1.224 sum 14.633 3.528 19.308 24.482 Atomic orbital electron populations 1.81232 1.13458 1.10082 1.09494 1.26042 0.93084 0.92422 0.92286 1.15964 0.83258 1.05176 0.99532 1.21323 0.94237 0.96120 0.96086 1.21495 0.93037 0.98894 0.99295 1.18302 0.84141 0.95929 0.94051 1.84725 1.13783 1.55470 1.76327 1.18054 0.90590 0.98378 0.90847 1.43116 1.19528 1.56409 1.10723 1.18527 0.84999 0.79805 0.81860 1.90854 1.22293 1.50387 1.78855 1.19092 0.99881 1.11361 0.93612 1.21379 0.90049 0.92795 1.00246 1.21258 1.02642 1.03312 0.93348 1.21484 0.91966 0.94538 0.97673 1.21338 0.99477 1.05407 1.00790 1.19744 0.84450 0.91009 0.93633 1.83750 1.29149 1.67606 1.30771 1.20874 1.08131 1.31889 0.86607 0.88770 1.24953 0.97002 0.97881 0.97206 1.69674 1.23032 1.44555 1.17599 0.85518 0.77504 0.79333 0.80372 1.19944 1.19735 1.19054 1.21201 0.93670 0.99463 0.97777 0.81406 0.79771 0.72334 0.72929 0.81388 0.81383 0.83119 0.86709 0.90488 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.38 18.54 19.00 0.35 -16.03 16 2 C 0.28 8.31 15.32 88.33 1.35 9.67 16 3 C -0.04 -0.86 5.74 -21.31 -0.12 -0.98 16 4 C -0.06 -0.80 9.74 22.54 0.22 -0.58 16 5 C -0.11 -1.15 9.96 22.30 0.22 -0.92 16 6 C 0.12 1.83 6.73 22.71 0.15 1.98 16 7 O -0.49 -4.50 12.90 -91.59 -1.18 -5.68 16 8 C 0.12 2.78 6.44 38.16 0.25 3.03 16 9 N -0.65 -15.97 5.22 -306.11 -1.60 -17.57 16 10 C 0.56 20.37 7.57 86.68 0.66 21.02 16 11 O -0.55 -26.01 12.33 16.83 0.21 -25.81 16 12 C -0.23 -8.48 5.89 -19.99 -0.12 -8.60 16 13 C -0.03 -0.63 9.53 22.52 0.21 -0.41 16 14 C -0.19 -4.11 10.03 22.25 0.22 -3.88 16 15 C -0.04 -1.08 10.03 22.30 0.22 -0.86 16 16 C -0.25 -10.13 9.16 22.36 0.20 -9.93 16 17 C 0.16 7.58 6.66 22.91 0.15 7.73 16 18 O -0.21 -11.77 6.67 0.94 0.01 -11.76 16 19 C -0.40 -23.91 9.95 67.93 0.68 -23.23 16 20 H 0.09 5.69 5.43 -2.91 -0.02 5.68 16 21 C 0.03 1.83 5.49 84.85 0.47 2.29 16 22 N -0.91 -55.49 13.96 21.62 0.30 -55.18 16 23 Si 0.95 51.19 28.62 68.60 1.96 53.15 16 24 H -0.27 -14.51 7.11 99.48 0.71 -13.81 16 25 H -0.27 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.27 -15.35 7.11 99.48 0.71 -14.65 16 27 C -0.10 -2.92 8.42 22.65 0.19 -2.73 16 28 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 29 H 0.19 0.54 8.06 -2.91 -0.02 0.51 16 30 H 0.42 0.51 9.06 -74.06 -0.67 -0.16 16 31 H 0.43 6.97 6.39 -92.71 -0.59 6.38 16 32 H 0.17 2.22 6.42 -2.91 -0.02 2.20 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 35 H 0.12 5.14 5.63 -2.91 -0.02 5.13 16 36 H 0.29 16.15 8.31 -92.71 -0.77 15.38 16 37 H 0.12 4.63 5.78 -2.91 -0.02 4.61 16 Total: -1.00 -85.38 335.46 4.94 -80.44 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -0.07 Total: 4.83 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.96 Total: -6.40 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -0.95 Total: -88.78 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.97 Total: -43.25 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 1.96 Total: 53.15 kcal Total: -85.38 4.94 -80.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179730656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.334 kcal (2) G-P(sol) polarization free energy of solvation -85.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds