Wall clock time and date at job start Tue Mar 31 2020 13:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47348 * 295.51080 * 3 2 1 5 5 C 1.53007 * 109.47358 * 59.99692 * 4 3 2 6 6 C 1.53001 * 109.47023 * 299.99612 * 4 3 2 7 7 C 1.50703 * 109.47398 * 179.97438 * 4 3 2 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 4 3 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 4 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31807 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99537 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47241 * 90.00370 * 20 18 16 22 22 H 1.48510 * 109.47200 * 210.00213 * 20 18 16 23 23 H 1.48497 * 109.47709 * 330.00146 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 4.44646 * 5.63398 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47034 * 175.50523 * 3 2 1 27 27 H 1.09011 * 109.46770 * 55.51077 * 3 2 1 28 28 H 1.09001 * 109.46852 * 180.02562 * 5 4 3 29 29 H 1.08993 * 109.46731 * 300.00313 * 5 4 3 30 30 H 1.09003 * 109.46582 * 60.00448 * 5 4 3 31 31 H 1.08992 * 109.47503 * 300.00327 * 6 4 3 32 32 H 1.08998 * 109.46818 * 60.00401 * 6 4 3 33 33 H 1.09008 * 109.47076 * 179.97438 * 6 4 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 4 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.96999 * 119.99661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6203 1.3018 5 6 2.6469 -2.0587 1.4148 6 6 2.6461 0.1963 2.4907 7 6 4.6634 -0.6202 1.3015 8 8 5.2695 -0.1683 0.3531 9 7 5.3375 -1.1232 2.3546 10 6 6.7264 -1.1178 2.3567 11 7 7.4787 -1.5692 3.3153 12 6 8.7811 -1.4839 3.1470 13 6 9.7592 -1.9713 4.1847 14 6 9.1815 -0.9312 1.9863 15 16 10.8511 -0.6835 1.4807 16 6 10.5867 0.0617 -0.0938 17 1 9.5809 0.2267 -0.4511 18 6 11.6681 0.4357 -0.8730 19 7 11.4703 0.9927 -2.0511 20 14 13.4076 0.1508 -0.2547 21 1 13.8744 -1.1900 -0.6902 22 1 14.3076 1.1930 -0.8109 23 1 13.4240 0.2230 1.2284 24 16 7.7456 -0.5050 1.0574 25 1 -1.0499 0.0001 0.0003 26 1 3.0089 1.0253 -0.0805 27 1 3.0096 -0.5812 -0.8471 28 1 3.0102 -2.5009 2.3425 29 1 1.5570 -2.0591 1.4148 30 1 3.0106 -2.6404 0.5677 31 1 3.0089 1.2210 2.4103 32 1 1.5561 0.1958 2.4908 33 1 3.0093 -0.2464 3.4183 34 1 4.8527 -1.4849 3.1129 35 1 9.9994 -3.0174 3.9947 36 1 10.6699 -1.3745 4.1343 37 1 9.3157 -1.8746 5.1758 38 1 12.2281 1.2550 -2.5969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185371649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:32 Heat of formation + Delta-G solvation = 44.202152 kcal Electronic energy + Delta-G solvation = -21962.949924 eV Core-core repulsion = 18638.593065 eV Total energy + Delta-G solvation = -3324.356859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71957 -38.75008 -36.73504 -34.90753 -32.75995 -32.73246 -30.54932 -27.81575 -27.72275 -27.18054 -25.90375 -24.83644 -22.40083 -20.80146 -19.39824 -18.19802 -17.87680 -17.54272 -16.62668 -15.94823 -15.70401 -15.38408 -15.10849 -14.63495 -14.44207 -14.07371 -13.89335 -13.46635 -13.21032 -12.77918 -12.77038 -12.67508 -12.30679 -12.16556 -12.01392 -11.81341 -11.57076 -11.48309 -11.34988 -11.28934 -10.75424 -10.63637 -10.39253 -10.29273 -10.14039 -9.84798 -9.46722 -9.17118 -8.86286 -8.77927 -7.89779 -6.73489 -6.55928 -4.29174 1.29487 1.78400 2.39813 2.40867 2.52773 2.64261 2.77893 2.92704 3.10118 3.19635 3.37128 3.51973 4.02669 4.07776 4.27795 4.48183 4.49019 4.51734 4.81944 4.84037 5.11080 5.22689 5.36688 5.37210 5.49884 5.54762 5.68722 5.79666 5.81102 5.85348 5.86408 6.04735 6.11654 6.33293 6.39370 6.86290 7.09476 7.39067 7.66976 7.91202 8.23577 8.41672 8.83806 10.51954 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.003371 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.534436 B = 8303.003060 C = 9564.147524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 C 0.005 3.995 4 C -0.065 4.065 5 C -0.145 4.145 6 C -0.145 4.145 7 C 0.516 3.484 8 O -0.499 6.499 9 N -0.612 5.612 10 C 0.192 3.808 11 N -0.481 5.481 12 C 0.031 3.969 13 C -0.063 4.063 14 C -0.239 4.239 15 S 0.054 5.946 16 C -0.545 4.545 17 H 0.105 0.895 18 C 0.102 3.898 19 N -0.857 5.857 20 Si 0.852 3.148 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.236 1.236 24 S 0.232 5.768 25 H 0.216 0.784 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.414 0.586 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.879 -4.133 8.802 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.032 4.032 4 C -0.068 4.068 5 C -0.202 4.202 6 C -0.202 4.202 7 C 0.301 3.699 8 O -0.372 6.372 9 N -0.261 5.261 10 C -0.178 4.178 11 N -0.203 5.203 12 C -0.111 4.111 13 C -0.123 4.123 14 C -0.475 4.475 15 S 0.302 5.698 16 C -0.693 4.693 17 H 0.122 0.878 18 C -0.110 4.110 19 N -0.490 5.490 20 Si 0.676 3.324 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.160 1.160 24 S 0.477 5.523 25 H 0.233 0.767 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.252 0.748 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.661 -3.680 7.839 17.896 hybrid contribution -0.331 -0.200 0.381 0.543 sum -15.992 -3.880 8.220 18.395 Atomic orbital electron populations 1.24836 0.95819 1.01673 1.00888 1.22861 0.94123 0.99931 1.00216 1.18599 0.84575 1.03390 0.96642 1.20639 0.89628 0.98707 0.97870 1.21951 1.02397 0.92948 1.02931 1.21949 1.02393 1.00152 0.95732 1.20692 0.90034 0.77547 0.81675 1.90735 1.68881 1.44085 1.33504 1.42414 1.02171 1.59940 1.21601 1.23996 0.88401 1.07566 0.97861 1.65865 1.04458 1.21373 1.28571 1.19104 0.88573 1.07305 0.96095 1.20148 0.95903 1.00623 0.95605 1.28171 1.05998 1.10774 1.02587 1.82460 0.96036 1.70235 1.21118 1.22660 0.98748 1.46823 1.01085 0.87758 1.24742 0.99307 0.92915 0.94004 1.70008 1.32579 1.36929 1.09513 0.86816 0.83929 0.79818 0.81875 1.18555 1.18985 1.16001 1.86174 0.91263 1.59149 1.15684 0.76720 0.88288 0.88288 0.91699 0.90738 0.91463 0.91462 0.90736 0.91700 0.74795 0.91708 0.91091 0.91724 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.73 19.25 29.55 0.57 -1.16 16 2 C -0.17 -1.62 10.80 -37.12 -0.40 -2.02 16 3 C 0.00 0.05 4.08 -29.52 -0.12 -0.07 16 4 C -0.07 -0.63 0.64 -155.66 -0.10 -0.73 16 5 C -0.14 -1.14 8.12 37.16 0.30 -0.84 16 6 C -0.14 -1.14 8.12 37.16 0.30 -0.84 16 7 C 0.52 7.08 6.44 -10.98 -0.07 7.01 16 8 O -0.50 -8.86 13.50 5.55 0.07 -8.79 16 9 N -0.61 -8.58 5.19 -11.78 -0.06 -8.64 16 10 C 0.19 3.58 8.40 -87.19 -0.73 2.84 16 11 N -0.48 -9.28 10.55 -9.78 -0.10 -9.38 16 12 C 0.03 0.63 6.73 -83.96 -0.57 0.06 16 13 C -0.06 -1.04 10.02 36.00 0.36 -0.68 16 14 C -0.24 -5.38 6.67 29.47 0.20 -5.18 16 15 S 0.05 1.29 18.70 -107.50 -2.01 -0.72 16 16 C -0.54 -15.12 9.80 30.81 0.30 -14.82 16 17 H 0.10 3.10 6.21 -52.49 -0.33 2.78 16 18 C 0.10 2.81 5.49 -17.49 -0.10 2.71 16 19 N -0.86 -24.69 13.98 55.47 0.78 -23.91 16 20 Si 0.85 19.63 27.73 -169.99 -4.71 14.91 16 21 H -0.26 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.24 -5.19 6.73 56.52 0.38 -4.81 16 24 S 0.23 5.09 18.35 -107.50 -1.97 3.12 16 25 H 0.22 1.01 7.80 -54.10 -0.42 0.59 16 26 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 27 H 0.10 1.06 8.10 -51.92 -0.42 0.64 16 28 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 29 H 0.07 0.52 7.23 -51.93 -0.38 0.15 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.52 7.23 -51.93 -0.38 0.15 16 33 H 0.06 0.43 7.57 -51.92 -0.39 0.04 16 34 H 0.41 4.42 7.66 -40.82 -0.31 4.11 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.15 7.37 -51.93 -0.38 0.77 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.28 7.31 8.32 -40.82 -0.34 6.97 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -31.96 349.22 -7.47 -39.43 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.67 Total: 2.43 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.05 Total: -13.70 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.61 Total: -41.94 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -3.98 Total: 2.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.96 -7.47 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185371649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.628 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds