Wall clock time and date at job start Tue Mar 31 2020 13:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47348 * 295.51080 * 3 2 1 5 5 C 1.53007 * 109.47358 * 59.99692 * 4 3 2 6 6 C 1.53001 * 109.47023 * 299.99612 * 4 3 2 7 7 C 1.50703 * 109.47398 * 179.97438 * 4 3 2 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 4 3 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 4 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31807 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99537 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47241 * 90.00370 * 20 18 16 22 22 H 1.48510 * 109.47200 * 210.00213 * 20 18 16 23 23 H 1.48497 * 109.47709 * 330.00146 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 4.44646 * 5.63398 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47034 * 175.50523 * 3 2 1 27 27 H 1.09011 * 109.46770 * 55.51077 * 3 2 1 28 28 H 1.09001 * 109.46852 * 180.02562 * 5 4 3 29 29 H 1.08993 * 109.46731 * 300.00313 * 5 4 3 30 30 H 1.09003 * 109.46582 * 60.00448 * 5 4 3 31 31 H 1.08992 * 109.47503 * 300.00327 * 6 4 3 32 32 H 1.08998 * 109.46818 * 60.00401 * 6 4 3 33 33 H 1.09008 * 109.47076 * 179.97438 * 6 4 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 4 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.96999 * 119.99661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6203 1.3018 5 6 2.6469 -2.0587 1.4148 6 6 2.6461 0.1963 2.4907 7 6 4.6634 -0.6202 1.3015 8 8 5.2695 -0.1683 0.3531 9 7 5.3375 -1.1232 2.3546 10 6 6.7264 -1.1178 2.3567 11 7 7.4787 -1.5692 3.3153 12 6 8.7811 -1.4839 3.1470 13 6 9.7592 -1.9713 4.1847 14 6 9.1815 -0.9312 1.9863 15 16 10.8511 -0.6835 1.4807 16 6 10.5867 0.0617 -0.0938 17 1 9.5809 0.2267 -0.4511 18 6 11.6681 0.4357 -0.8730 19 7 11.4703 0.9927 -2.0511 20 14 13.4076 0.1508 -0.2547 21 1 13.8744 -1.1900 -0.6902 22 1 14.3076 1.1930 -0.8109 23 1 13.4240 0.2230 1.2284 24 16 7.7456 -0.5050 1.0574 25 1 -1.0499 0.0001 0.0003 26 1 3.0089 1.0253 -0.0805 27 1 3.0096 -0.5812 -0.8471 28 1 3.0102 -2.5009 2.3425 29 1 1.5570 -2.0591 1.4148 30 1 3.0106 -2.6404 0.5677 31 1 3.0089 1.2210 2.4103 32 1 1.5561 0.1958 2.4908 33 1 3.0093 -0.2464 3.4183 34 1 4.8527 -1.4849 3.1129 35 1 9.9994 -3.0174 3.9947 36 1 10.6699 -1.3745 4.1343 37 1 9.3157 -1.8746 5.1758 38 1 12.2281 1.2550 -2.5969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185371649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:31 Heat of formation + Delta-G solvation = 24.271690 kcal Electronic energy + Delta-G solvation = -21963.814174 eV Core-core repulsion = 18638.593065 eV Total energy + Delta-G solvation = -3325.221109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.92340 -40.31193 -37.67038 -36.28271 -34.82444 -33.49313 -31.97586 -28.81556 -28.56548 -28.36800 -27.90891 -26.10710 -23.66713 -22.22251 -20.83269 -19.70955 -19.13844 -18.62246 -17.87318 -17.49140 -17.23575 -16.91650 -16.50855 -15.81292 -15.63218 -15.19755 -15.07269 -14.99677 -14.49572 -14.18659 -13.66277 -13.62067 -13.49076 -13.37616 -13.33432 -13.18162 -13.08832 -12.93516 -12.48610 -12.27466 -12.21488 -12.14723 -11.93728 -11.34263 -11.26832 -11.08961 -11.01007 -10.83586 -10.60263 -10.55962 -9.62614 -8.61776 -8.53777 -6.34826 -0.30405 0.14258 0.75536 1.05241 1.13651 1.28873 1.38888 1.43578 1.62556 1.96090 1.96464 1.96573 2.13893 2.50747 2.77054 3.15925 3.50373 3.67989 3.73139 3.81493 4.02175 4.36790 4.61022 4.64232 4.66750 4.69032 4.81879 4.84500 4.85096 4.90491 4.94141 5.03362 5.16531 5.19703 5.22051 5.43797 5.60593 5.87617 6.07627 6.68910 6.74617 6.76529 6.80515 8.50853 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.003371 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.534436 B = 8303.003060 C = 9564.147524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.209 4.209 3 C 0.005 3.995 4 C -0.052 4.052 5 C -0.143 4.143 6 C -0.143 4.143 7 C 0.516 3.484 8 O -0.537 6.537 9 N -0.599 5.599 10 C 0.233 3.767 11 N -0.484 5.484 12 C 0.053 3.947 13 C -0.065 4.065 14 C -0.277 4.277 15 S 0.061 5.939 16 C -0.567 4.567 17 H 0.067 0.933 18 C 0.048 3.952 19 N -0.907 5.907 20 Si 0.914 3.086 21 H -0.253 1.253 22 H -0.254 1.254 23 H -0.219 1.219 24 S 0.163 5.837 25 H 0.248 0.752 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.436 0.564 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.694 -5.572 11.865 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.209 4.209 3 C -0.032 4.032 4 C -0.055 4.055 5 C -0.200 4.200 6 C -0.200 4.200 7 C 0.303 3.697 8 O -0.412 6.412 9 N -0.250 5.250 10 C -0.140 4.140 11 N -0.206 5.206 12 C -0.088 4.088 13 C -0.125 4.125 14 C -0.512 4.512 15 S 0.306 5.694 16 C -0.715 4.715 17 H 0.085 0.915 18 C -0.159 4.159 19 N -0.543 5.543 20 Si 0.733 3.267 21 H -0.177 1.177 22 H -0.178 1.178 23 H -0.142 1.142 24 S 0.409 5.591 25 H 0.265 0.735 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.278 0.722 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.542 -5.135 10.938 21.301 hybrid contribution -0.204 0.203 -0.498 0.575 sum -17.745 -4.932 10.440 21.171 Atomic orbital electron populations 1.25619 0.96480 0.99500 0.98758 1.22760 0.94097 1.01898 1.02188 1.18455 0.85834 1.02341 0.96545 1.20665 0.85761 1.00547 0.98573 1.21983 1.03404 0.91136 1.03458 1.21981 1.03401 0.99279 0.95321 1.21703 0.91775 0.75735 0.80494 1.90743 1.69995 1.45441 1.35070 1.42567 1.00129 1.59673 1.22678 1.24259 0.90207 1.03839 0.95657 1.66094 1.04089 1.22378 1.28017 1.19844 0.89508 1.03926 0.95539 1.20325 0.95081 1.01515 0.95529 1.28112 1.05187 1.14047 1.03808 1.81884 0.97205 1.71686 1.18641 1.22842 0.97550 1.47497 1.03619 0.91464 1.25729 1.03792 0.92354 0.93985 1.70118 1.34176 1.38838 1.11180 0.85895 0.78250 0.80238 0.82301 1.17656 1.17815 1.14215 1.86551 0.93410 1.60832 1.18291 0.73550 0.89799 0.89800 0.89850 0.89100 0.92479 0.92478 0.89097 0.89852 0.72228 0.89827 0.90842 0.89258 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 19.25 74.32 1.43 -1.01 16 2 C -0.21 -3.63 10.80 31.12 0.34 -3.30 16 3 C 0.01 0.11 4.08 28.78 0.12 0.23 16 4 C -0.05 -0.93 0.64 -52.93 -0.03 -0.97 16 5 C -0.14 -1.89 8.12 71.98 0.58 -1.31 16 6 C -0.14 -1.89 8.12 71.98 0.58 -1.31 16 7 C 0.52 13.94 6.44 87.66 0.56 14.51 16 8 O -0.54 -19.89 13.50 -3.07 -0.04 -19.93 16 9 N -0.60 -15.77 5.19 -309.56 -1.61 -17.38 16 10 C 0.23 8.46 8.40 179.15 1.50 9.96 16 11 N -0.48 -17.67 10.55 -184.87 -1.95 -19.62 16 12 C 0.05 2.06 6.73 41.77 0.28 2.34 16 13 C -0.07 -1.96 10.02 71.24 0.71 -1.24 16 14 C -0.28 -12.59 6.67 67.00 0.45 -12.14 16 15 S 0.06 2.93 18.70 -56.49 -1.06 1.88 16 16 C -0.57 -33.05 9.80 67.87 0.67 -32.38 16 17 H 0.07 4.32 6.21 -2.91 -0.02 4.30 16 18 C 0.05 2.76 5.49 84.74 0.47 3.22 16 19 N -0.91 -54.88 13.98 21.59 0.30 -54.58 16 20 Si 0.91 40.96 27.73 68.60 1.90 42.86 16 21 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.22 -9.12 6.73 99.48 0.67 -8.45 16 24 S 0.16 7.47 18.35 -56.49 -1.04 6.44 16 25 H 0.25 1.27 7.80 -4.42 -0.03 1.23 16 26 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 27 H 0.08 1.91 8.10 -2.38 -0.02 1.89 16 28 H 0.08 0.80 7.56 -2.39 -0.02 0.78 16 29 H 0.09 0.97 7.23 -2.39 -0.02 0.95 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.97 7.23 -2.39 -0.02 0.95 16 33 H 0.08 0.80 7.57 -2.38 -0.02 0.78 16 34 H 0.44 7.87 7.66 -92.71 -0.71 7.16 16 35 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.07 2.20 7.37 -2.39 -0.02 2.19 16 37 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.28 15.54 8.32 -92.71 -0.77 14.77 16 Total: -1.00 -73.82 349.22 4.52 -69.30 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.35 Total: 14.42 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 7.66 Total: -23.39 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -3.25 Total: -91.57 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.04 Total: -19.93 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.90 Total: 42.86 kcal Atomic # 16 Polarization: 10.41 SS G_CDS: -2.09 Total: 8.31 kcal Total: -73.82 4.52 -69.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185371649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.567 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds