Wall clock time and date at job start Tue Mar 31 2020 13:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 211.83874 * 3 2 1 5 5 C 1.52995 * 109.47823 * 32.80779 * 4 3 2 6 6 C 1.52990 * 109.47353 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 6 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31807 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99537 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47241 * 90.00370 * 20 18 16 22 22 H 1.48510 * 109.47200 * 210.00213 * 20 18 16 23 23 H 1.48497 * 109.47709 * 330.00146 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 1.09007 * 109.47174 * 295.35353 * 1 2 3 26 26 H 1.08998 * 109.47589 * 55.35748 * 1 2 3 27 27 H 1.09005 * 109.46919 * 175.36149 * 1 2 3 28 28 H 1.08999 * 109.46877 * 272.79894 * 4 3 2 29 29 H 1.09003 * 109.46637 * 152.81105 * 4 3 2 30 30 H 1.08998 * 109.47142 * 59.99329 * 5 4 3 31 31 H 1.09011 * 109.46657 * 299.99887 * 5 4 3 32 32 H 1.08998 * 109.47508 * 59.99597 * 6 5 4 33 33 H 1.09002 * 109.47337 * 299.99883 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.96999 * 119.99661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 0.0003 5 6 4.6293 -1.2102 -0.7811 6 6 6.1592 -1.2084 -0.7812 7 6 6.6629 -2.4025 -1.5503 8 8 5.8755 -3.1788 -2.0489 9 7 7.9882 -2.6084 -1.6833 10 6 8.4523 -3.7058 -2.3971 11 7 9.7024 -4.0007 -2.5942 12 6 9.9602 -5.0831 -3.2967 13 6 11.3677 -5.5316 -3.5948 14 6 8.8825 -5.7628 -3.7324 15 16 8.9102 -7.2409 -4.6910 16 6 7.1802 -7.5247 -4.8660 17 1 6.4730 -6.8412 -4.4197 18 6 6.7272 -8.6236 -5.5757 19 7 5.4330 -8.8362 -5.7061 20 14 7.9504 -9.8053 -6.3482 21 1 8.2811 -10.8798 -5.3781 22 1 7.3549 -10.4064 -7.5687 23 1 9.1877 -9.0692 -6.7123 24 16 7.4392 -4.9211 -3.1712 25 1 -0.3634 0.4401 0.9287 26 1 -0.3634 0.5842 -0.8454 27 1 -0.3633 -1.0244 -0.0831 28 1 4.4811 -0.0481 1.0269 29 1 4.4806 0.9162 -0.4692 30 1 4.2662 -1.1602 -1.8075 31 1 4.2667 -2.1246 -0.3114 32 1 6.5228 -1.2581 0.2452 33 1 6.5216 -0.2940 -1.2510 34 1 8.6179 -1.9877 -1.2842 35 1 11.7115 -6.1988 -2.8043 36 1 11.3869 -6.0585 -4.5488 37 1 12.0228 -4.6620 -3.6466 38 1 5.1157 -9.6060 -6.2037 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185371712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:47 Heat of formation + Delta-G solvation = 30.092439 kcal Electronic energy + Delta-G solvation = -20918.382856 eV Core-core repulsion = 17593.414154 eV Total energy + Delta-G solvation = -3324.968702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21137 -38.65096 -36.01059 -34.77466 -33.53084 -32.75004 -30.83731 -29.77785 -27.24386 -26.86855 -25.89241 -23.98598 -22.10154 -20.98559 -19.71197 -18.14586 -17.69178 -17.00955 -16.39172 -16.31740 -15.78570 -15.27127 -15.04621 -14.62529 -14.16646 -14.12378 -13.99508 -13.72691 -13.59803 -13.22032 -12.80435 -12.76533 -12.67024 -12.10310 -12.00449 -11.82390 -11.56850 -11.34657 -11.29103 -11.17561 -10.81981 -10.61963 -10.13521 -9.98173 -9.88763 -9.88299 -9.45725 -9.16389 -8.85162 -8.76846 -7.88409 -6.72396 -6.55049 -4.28295 1.31815 1.80589 2.44199 2.44712 2.50617 2.54234 2.78180 2.94319 3.10663 3.20194 3.38240 3.53447 4.01470 4.03422 4.44046 4.49155 4.71389 4.72575 4.84802 5.10153 5.13122 5.15580 5.23847 5.30123 5.33000 5.37746 5.43904 5.73765 5.86138 5.87100 6.03405 6.09689 6.12344 6.34602 6.41162 6.88203 7.13213 7.47914 7.67874 7.96890 8.24642 8.42966 8.84652 10.52872 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.002892 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.527904 B = 9680.542558 C =11695.687304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.194 4.194 3 C -0.188 4.188 4 C -0.004 4.004 5 C -0.103 4.103 6 C -0.130 4.130 7 C 0.502 3.498 8 O -0.500 6.500 9 N -0.618 5.618 10 C 0.193 3.807 11 N -0.482 5.482 12 C 0.031 3.969 13 C -0.063 4.063 14 C -0.240 4.240 15 S 0.053 5.947 16 C -0.545 4.545 17 H 0.105 0.895 18 C 0.102 3.898 19 N -0.857 5.857 20 Si 0.852 3.148 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.236 1.236 24 S 0.231 5.769 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.415 0.585 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 16.601 10.619 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.194 4.194 3 C -0.188 4.188 4 C -0.041 4.041 5 C -0.141 4.141 6 C -0.170 4.170 7 C 0.288 3.712 8 O -0.374 6.374 9 N -0.268 5.268 10 C -0.178 4.178 11 N -0.204 5.204 12 C -0.111 4.111 13 C -0.123 4.123 14 C -0.476 4.476 15 S 0.301 5.699 16 C -0.693 4.693 17 H 0.122 0.878 18 C -0.110 4.110 19 N -0.491 5.491 20 Si 0.676 3.324 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.160 1.160 24 S 0.477 5.523 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.252 0.748 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.152 15.347 9.819 18.220 hybrid contribution 0.403 0.237 0.171 0.498 sum 0.252 15.583 9.990 18.512 Atomic orbital electron populations 1.18856 0.84759 1.03202 1.02823 1.22438 0.94008 1.01336 1.01620 1.22262 0.93630 1.01503 1.01364 1.18665 0.84598 0.99255 1.01563 1.21334 0.92302 0.98295 1.02209 1.21599 0.97793 0.96140 1.01442 1.21012 0.80870 0.88016 0.81297 1.90744 1.54055 1.45963 1.46639 1.42521 1.07956 1.24458 1.51819 1.24021 0.92861 0.96464 1.04430 1.65875 1.17039 1.18578 1.18909 1.19111 0.96001 0.92860 1.03156 1.20146 0.90043 1.00523 1.01548 1.28170 1.00292 1.08162 1.10972 1.82447 1.12656 1.18470 1.56370 1.22662 0.89195 1.15985 1.41469 0.87768 1.24746 0.95477 0.96501 0.94269 1.70011 1.12582 1.28346 1.38125 0.86811 0.82532 0.82586 0.80479 1.18557 1.18988 1.16006 1.86205 1.03650 1.14832 1.47650 0.90361 0.90262 0.90070 0.89540 0.89542 0.90333 0.90328 0.88028 0.88022 0.74771 0.91717 0.91098 0.91731 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.28 10.32 34.37 0.35 0.07 16 2 C -0.19 -2.07 14.13 -37.12 -0.52 -2.59 16 3 C -0.19 -2.01 13.34 -37.12 -0.50 -2.50 16 4 C 0.00 -0.03 5.70 -29.52 -0.17 -0.20 16 5 C -0.10 -0.97 4.46 -26.74 -0.12 -1.09 16 6 C -0.13 -0.99 5.70 -27.89 -0.16 -1.15 16 7 C 0.50 6.68 7.79 -10.98 -0.09 6.59 16 8 O -0.50 -9.06 13.50 5.55 0.07 -8.98 16 9 N -0.62 -8.46 5.40 -11.78 -0.06 -8.52 16 10 C 0.19 3.61 8.40 -87.19 -0.73 2.88 16 11 N -0.48 -9.38 10.55 -9.78 -0.10 -9.49 16 12 C 0.03 0.62 6.73 -83.96 -0.57 0.06 16 13 C -0.06 -1.05 10.02 36.00 0.36 -0.69 16 14 C -0.24 -5.45 6.67 29.47 0.20 -5.26 16 15 S 0.05 1.28 18.70 -107.50 -2.01 -0.73 16 16 C -0.54 -15.26 9.80 30.81 0.30 -14.96 16 17 H 0.10 3.13 6.21 -52.49 -0.33 2.81 16 18 C 0.10 2.82 5.49 -17.49 -0.10 2.73 16 19 N -0.86 -24.88 13.98 55.47 0.78 -24.11 16 20 Si 0.85 19.76 27.73 -169.99 -4.71 15.05 16 21 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.24 -5.23 6.73 56.52 0.38 -4.85 16 24 S 0.23 5.15 18.35 -107.50 -1.97 3.18 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.08 0.87 8.10 -51.92 -0.42 0.45 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.41 4.05 8.82 -40.82 -0.36 3.69 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.16 7.37 -51.93 -0.38 0.78 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.28 7.36 8.32 -40.82 -0.34 7.02 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -34.26 357.93 -9.22 -43.48 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.87 Total: 0.83 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.73 Total: -16.11 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.61 Total: -42.11 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.98 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.71 Total: 15.05 kcal Atomic # 16 Polarization: 6.43 SS G_CDS: -3.98 Total: 2.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.26 -9.22 -43.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185371712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.572 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds