Wall clock time and date at job start Tue Mar 31 2020 13:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 211.83874 * 3 2 1 5 5 C 1.52995 * 109.47823 * 32.80779 * 4 3 2 6 6 C 1.52990 * 109.47353 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 6 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31807 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99537 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47241 * 90.00370 * 20 18 16 22 22 H 1.48510 * 109.47200 * 210.00213 * 20 18 16 23 23 H 1.48497 * 109.47709 * 330.00146 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 1.09007 * 109.47174 * 295.35353 * 1 2 3 26 26 H 1.08998 * 109.47589 * 55.35748 * 1 2 3 27 27 H 1.09005 * 109.46919 * 175.36149 * 1 2 3 28 28 H 1.08999 * 109.46877 * 272.79894 * 4 3 2 29 29 H 1.09003 * 109.46637 * 152.81105 * 4 3 2 30 30 H 1.08998 * 109.47142 * 59.99329 * 5 4 3 31 31 H 1.09011 * 109.46657 * 299.99887 * 5 4 3 32 32 H 1.08998 * 109.47508 * 59.99597 * 6 5 4 33 33 H 1.09002 * 109.47337 * 299.99883 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.96999 * 119.99661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 0.0003 5 6 4.6293 -1.2102 -0.7811 6 6 6.1592 -1.2084 -0.7812 7 6 6.6629 -2.4025 -1.5503 8 8 5.8755 -3.1788 -2.0489 9 7 7.9882 -2.6084 -1.6833 10 6 8.4523 -3.7058 -2.3971 11 7 9.7024 -4.0007 -2.5942 12 6 9.9602 -5.0831 -3.2967 13 6 11.3677 -5.5316 -3.5948 14 6 8.8825 -5.7628 -3.7324 15 16 8.9102 -7.2409 -4.6910 16 6 7.1802 -7.5247 -4.8660 17 1 6.4730 -6.8412 -4.4197 18 6 6.7272 -8.6236 -5.5757 19 7 5.4330 -8.8362 -5.7061 20 14 7.9504 -9.8053 -6.3482 21 1 8.2811 -10.8798 -5.3781 22 1 7.3549 -10.4064 -7.5687 23 1 9.1877 -9.0692 -6.7123 24 16 7.4392 -4.9211 -3.1712 25 1 -0.3634 0.4401 0.9287 26 1 -0.3634 0.5842 -0.8454 27 1 -0.3633 -1.0244 -0.0831 28 1 4.4811 -0.0481 1.0269 29 1 4.4806 0.9162 -0.4692 30 1 4.2662 -1.1602 -1.8075 31 1 4.2667 -2.1246 -0.3114 32 1 6.5228 -1.2581 0.2452 33 1 6.5216 -0.2940 -1.2510 34 1 8.6179 -1.9877 -1.2842 35 1 11.7115 -6.1988 -2.8043 36 1 11.3869 -6.0585 -4.5488 37 1 12.0228 -4.6620 -3.6466 38 1 5.1157 -9.6060 -6.2037 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185371712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:46 Heat of formation + Delta-G solvation = 8.059996 kcal Electronic energy + Delta-G solvation = -20919.338254 eV Core-core repulsion = 17593.414154 eV Total energy + Delta-G solvation = -3325.924101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46715 -40.20039 -36.76675 -36.10814 -34.83192 -34.26603 -32.20450 -30.55906 -28.80407 -27.92326 -27.70482 -25.21294 -23.14709 -22.26488 -21.15474 -19.78880 -19.18967 -18.24107 -17.45902 -17.34563 -17.26071 -17.17257 -16.13902 -16.02728 -15.37830 -15.34736 -14.99790 -14.73784 -14.48987 -14.41938 -14.30670 -13.64734 -13.53601 -13.45528 -13.30252 -13.20926 -13.17455 -13.09156 -12.54380 -12.34714 -12.14105 -11.94262 -11.88363 -11.40842 -11.28653 -10.86725 -10.67493 -10.58955 -10.56720 -10.55292 -9.61881 -8.62466 -8.53224 -6.35482 -0.27732 0.16713 0.76853 1.05591 1.23676 1.28302 1.38840 1.51713 1.64073 1.78158 1.81888 1.99661 2.13331 2.50341 2.76179 3.36563 3.48052 3.75046 4.05441 4.06285 4.36983 4.44110 4.63332 4.64254 4.70137 4.74201 4.79351 4.82639 4.84636 4.87160 4.94118 5.06205 5.14400 5.18731 5.33655 5.45216 5.59929 5.98805 6.06884 6.73292 6.75701 6.78334 6.88940 8.50280 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.002892 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.527904 B = 9680.542558 C =11695.687304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.223 4.223 3 C -0.214 4.214 4 C 0.001 3.999 5 C -0.101 4.101 6 C -0.113 4.113 7 C 0.499 3.501 8 O -0.549 6.549 9 N -0.603 5.603 10 C 0.235 3.765 11 N -0.486 5.486 12 C 0.053 3.947 13 C -0.065 4.065 14 C -0.279 4.279 15 S 0.059 5.941 16 C -0.567 4.567 17 H 0.066 0.934 18 C 0.047 3.953 19 N -0.908 5.908 20 Si 0.915 3.085 21 H -0.252 1.252 22 H -0.254 1.254 23 H -0.219 1.219 24 S 0.156 5.844 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.440 0.560 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 18.965 12.114 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.223 4.223 3 C -0.214 4.214 4 C -0.035 4.035 5 C -0.139 4.139 6 C -0.152 4.152 7 C 0.288 3.712 8 O -0.425 6.425 9 N -0.256 5.256 10 C -0.137 4.137 11 N -0.208 5.208 12 C -0.088 4.088 13 C -0.124 4.124 14 C -0.514 4.514 15 S 0.304 5.696 16 C -0.715 4.715 17 H 0.084 0.916 18 C -0.160 4.160 19 N -0.544 5.544 20 Si 0.734 3.266 21 H -0.176 1.176 22 H -0.178 1.178 23 H -0.142 1.142 24 S 0.401 5.599 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.282 0.718 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.676 17.781 11.358 21.268 hybrid contribution -0.528 -0.148 -0.058 0.551 sum 2.148 17.633 11.300 21.053 Atomic orbital electron populations 1.19042 0.83037 1.03764 1.04215 1.23417 0.95543 1.01496 1.01882 1.23198 0.95114 1.01616 1.01491 1.18795 0.82781 0.99062 1.02879 1.21247 0.93769 0.98227 1.00707 1.21727 0.96000 0.94434 1.03027 1.22319 0.79959 0.88698 0.80232 1.90760 1.55229 1.48013 1.48527 1.42742 1.08954 1.23110 1.50775 1.24337 0.91731 0.96013 1.01630 1.66114 1.16341 1.18521 1.19838 1.19862 0.97177 0.91638 1.00166 1.20321 0.87909 1.01950 1.02247 1.28096 1.00639 1.08971 1.13654 1.81857 1.08830 1.20235 1.58707 1.22845 0.91528 1.15704 1.41449 0.91570 1.25751 0.97420 0.98202 0.94589 1.70121 1.14865 1.29614 1.39813 0.85878 0.80523 0.80241 0.79926 1.17624 1.17767 1.14226 1.86611 1.05983 1.17545 1.49711 0.88621 0.89171 0.89804 0.86997 0.86995 0.93019 0.93015 0.83836 0.83830 0.71781 0.89846 0.90902 0.89227 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.61 10.32 70.18 0.72 0.11 16 2 C -0.22 -4.74 14.13 31.13 0.44 -4.30 16 3 C -0.21 -4.43 13.34 31.13 0.42 -4.02 16 4 C 0.00 0.01 5.70 28.79 0.16 0.18 16 5 C -0.10 -1.75 4.46 30.59 0.14 -1.61 16 6 C -0.11 -1.28 5.70 29.85 0.17 -1.11 16 7 C 0.50 12.32 7.79 87.66 0.68 13.00 16 8 O -0.55 -20.30 13.50 -3.07 -0.04 -20.34 16 9 N -0.60 -14.77 5.40 -309.56 -1.67 -16.44 16 10 C 0.24 8.50 8.40 179.15 1.50 10.01 16 11 N -0.49 -17.75 10.55 -184.87 -1.95 -19.70 16 12 C 0.05 2.07 6.73 41.77 0.28 2.35 16 13 C -0.07 -1.97 10.02 71.24 0.71 -1.25 16 14 C -0.28 -12.84 6.67 67.00 0.45 -12.39 16 15 S 0.06 2.87 18.70 -56.49 -1.06 1.81 16 16 C -0.57 -33.45 9.80 67.87 0.67 -32.79 16 17 H 0.07 4.31 6.21 -2.91 -0.02 4.29 16 18 C 0.05 2.72 5.49 84.74 0.47 3.18 16 19 N -0.91 -55.46 13.98 21.59 0.30 -55.16 16 20 Si 0.92 41.34 27.73 68.60 1.90 43.25 16 21 H -0.25 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.25 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.22 -9.20 6.73 99.48 0.67 -8.53 16 24 S 0.16 7.21 18.35 -56.49 -1.04 6.18 16 25 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.07 8.14 -2.38 -0.02 1.06 16 28 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.05 1.16 8.10 -2.38 -0.02 1.14 16 32 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.44 6.55 8.82 -92.71 -0.82 5.73 16 35 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.07 2.21 7.37 -2.39 -0.02 2.19 16 37 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.28 15.68 8.32 -92.71 -0.77 14.91 16 Total: -1.00 -81.76 357.93 3.50 -78.26 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.25 Total: 10.79 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 6.81 Total: -28.65 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -3.32 Total: -91.30 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.04 Total: -20.34 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.90 Total: 43.25 kcal Atomic # 16 Polarization: 10.09 SS G_CDS: -2.09 Total: 7.99 kcal Total: -81.76 3.50 -78.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185371712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.318 kcal (2) G-P(sol) polarization free energy of solvation -81.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds