Wall clock time and date at job start Tue Mar 31 2020 14:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46701 * 185.51654 * 3 2 1 5 5 C 1.37098 * 119.99900 * 264.25750 * 4 3 2 6 6 H 1.07997 * 119.99851 * 197.71396 * 5 4 3 7 7 C 1.38953 * 119.99967 * 17.71168 * 5 4 3 8 8 N 1.31408 * 119.99879 * 21.49261 * 7 5 4 9 9 Si 1.86795 * 119.99964 * 201.48698 * 7 5 4 10 10 H 1.48496 * 109.47118 * 59.99999 * 9 7 5 11 11 H 1.48494 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47037 * 300.00428 * 9 7 5 13 13 C 1.34775 * 119.99753 * 84.25862 * 4 3 2 14 14 O 1.21296 * 119.99901 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00622 * 359.97438 * 13 4 3 16 16 H 1.09005 * 115.55653 * 325.69460 * 15 13 4 17 17 C 1.53002 * 117.50080 * 111.37278 * 15 13 4 18 18 C 1.52997 * 117.50114 * 179.97438 * 15 13 4 19 19 H 1.09006 * 117.49426 * 145.02341 * 18 15 13 20 20 C 1.50693 * 117.52018 * 359.97438 * 18 15 13 21 21 C 1.38226 * 119.95776 * 299.84428 * 20 18 15 22 22 C 1.38427 * 120.04757 * 179.76831 * 21 20 18 23 23 F 1.35098 * 120.02359 * 180.27817 * 22 21 20 24 24 C 1.38599 * 119.95210 * 0.50105 * 22 21 20 25 25 F 1.35099 * 120.04342 * 179.72792 * 24 22 21 26 26 C 1.38597 * 119.91333 * 359.75077 * 24 22 21 27 27 F 1.35102 * 120.02474 * 180.02562 * 26 24 22 28 28 C 1.38230 * 119.95511 * 120.11096 * 20 18 15 29 29 H 1.08993 * 109.47011 * 65.51954 * 3 2 1 30 30 H 1.08996 * 109.46894 * 305.51491 * 3 2 1 31 31 H 0.97004 * 119.99869 * 179.97438 * 8 7 5 32 32 H 1.09007 * 117.49538 * 0.02562 * 17 15 13 33 33 H 1.08992 * 117.50064 * 214.98451 * 17 15 13 34 34 H 1.08007 * 119.97253 * 0.02562 * 21 20 18 35 35 H 1.07997 * 119.97648 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0956 1.3757 0.1328 5 6 3.4358 2.0933 -0.9848 6 1 4.0516 2.9758 -0.8931 7 6 2.9883 1.6852 -2.2354 8 7 1.9344 0.9065 -2.3341 9 14 3.8847 2.2435 -3.7761 10 1 5.2924 1.7731 -3.7277 11 1 3.2134 1.6755 -4.9727 12 1 3.8608 3.7264 -3.8528 13 6 3.2099 1.9352 1.3536 14 8 3.6140 3.0736 1.4636 15 6 2.8355 1.1467 2.5820 16 1 2.0027 0.4540 2.4604 17 6 3.9649 0.7343 3.5282 18 6 2.9881 1.8375 3.9386 19 1 2.2553 1.5995 4.7098 20 6 3.5017 3.2541 3.9448 21 6 4.7500 3.5380 3.4235 22 6 5.2218 4.8394 3.4238 23 9 6.4396 5.1172 2.9091 24 6 4.4457 5.8566 3.9568 25 9 4.9066 7.1265 3.9631 26 6 3.1965 5.5692 4.4838 27 9 2.4379 6.5590 5.0034 28 6 2.7262 4.2672 4.4768 29 1 2.9715 -0.4250 -0.9352 30 1 2.9716 -0.5962 0.8365 31 1 1.6217 0.6219 -3.2072 32 1 4.9787 1.0338 3.2624 33 1 3.8751 -0.2295 4.0292 34 1 5.3561 2.7444 3.0118 35 1 1.7531 4.0427 4.8879 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185670036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:05 Heat of formation + Delta-G solvation = -63.735448 kcal Electronic energy + Delta-G solvation = -27239.579819 eV Core-core repulsion = 22790.488871 eV Total energy + Delta-G solvation = -4449.090947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.45917 -48.87102 -48.14851 -40.13613 -38.31792 -36.33317 -35.51122 -34.35155 -31.96835 -30.39303 -30.00267 -27.62129 -25.73377 -24.10650 -23.24439 -22.84992 -20.90444 -19.05782 -18.16793 -17.90077 -17.63545 -17.13240 -16.71683 -16.45875 -16.27975 -15.64383 -15.20480 -15.13598 -14.73887 -14.63172 -14.60410 -14.25263 -14.08352 -13.79846 -13.42969 -13.10539 -12.76506 -12.65451 -12.28650 -12.09381 -11.81165 -11.73241 -11.55814 -11.38241 -11.24066 -11.21258 -10.67640 -10.57607 -10.50502 -10.42864 -10.17712 -9.36844 -9.01579 -8.56789 -8.19547 -7.90153 -6.61798 -4.10317 0.96318 1.12216 2.94076 3.15676 3.17129 3.18275 3.47580 3.62529 3.69289 3.88165 4.00864 4.09310 4.38324 4.45838 4.49449 4.63768 4.69562 4.78614 4.94882 5.02320 5.13461 5.19288 5.24458 5.56920 5.65016 5.70656 5.81435 5.95581 6.01694 6.02130 6.04215 6.13871 6.40356 6.48189 6.89453 7.36946 7.77571 8.15793 8.64166 8.88300 9.07767 9.60940 10.43876 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.004514 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.896679 B = 6202.051338 C = 7197.268306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.244 3.756 3 C 0.221 3.779 4 N -0.431 5.431 5 C -0.315 4.315 6 H 0.110 0.890 7 C 0.034 3.966 8 N -0.874 5.874 9 Si 0.927 3.073 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.472 3.528 14 O -0.560 6.560 15 C -0.161 4.161 16 H 0.119 0.881 17 C -0.151 4.151 18 C -0.096 4.096 19 H 0.124 0.876 20 C 0.014 3.986 21 C -0.054 4.054 22 C 0.088 3.912 23 F -0.126 7.126 24 C 0.025 3.975 25 F -0.127 7.127 26 C 0.082 3.918 27 F -0.129 7.129 28 C -0.131 4.131 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.275 0.725 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.146 0.854 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.561 -2.625 12.166 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.075 4.075 3 C 0.093 3.907 4 N -0.149 5.149 5 C -0.442 4.442 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.512 5.512 9 Si 0.753 3.247 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.261 3.739 14 O -0.444 6.444 15 C -0.183 4.183 16 H 0.137 0.863 17 C -0.188 4.188 18 C -0.115 4.115 19 H 0.142 0.858 20 C 0.013 3.987 21 C -0.072 4.072 22 C 0.068 3.932 23 F -0.105 7.105 24 C 0.004 3.996 25 F -0.106 7.106 26 C 0.062 3.938 27 F -0.108 7.108 28 C -0.150 4.150 29 H 0.145 0.855 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.163 0.837 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.013 -2.044 12.005 12.822 hybrid contribution 0.567 0.712 -1.282 1.573 sum 4.580 -1.331 10.723 11.736 Atomic orbital electron populations 1.80913 1.13603 1.08549 1.11973 1.29306 0.95368 0.92420 0.90357 1.18777 0.81560 0.86195 1.04176 1.43599 1.55554 1.10360 1.05431 1.19689 1.30196 1.11605 0.82665 0.87258 1.25288 0.94888 0.97192 0.99643 1.69850 1.19575 1.35602 1.26165 0.85965 0.79508 0.79329 0.79866 1.19581 1.20933 1.19748 1.19178 0.84522 0.86789 0.83383 1.90585 1.50693 1.18279 1.84806 1.22458 1.02298 1.02859 0.90671 0.86294 1.23149 0.95549 0.98668 1.01444 1.20947 1.02957 0.89383 0.98190 0.85788 1.18449 0.92073 0.93658 0.94524 1.20751 0.96287 0.94371 0.95841 1.17132 0.82433 0.92837 1.00818 1.91515 1.40028 1.94312 1.84626 1.17477 0.94294 0.79775 1.08029 1.91496 1.88580 1.35553 1.94971 1.17097 0.88834 0.86197 1.01687 1.91506 1.74571 1.60296 1.84409 1.20710 1.01367 0.89635 1.03266 0.85521 0.89577 0.91420 0.87747 0.87371 0.83663 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.60 18.54 42.15 0.78 -9.82 16 2 C 0.24 5.01 12.80 -20.76 -0.27 4.75 16 3 C 0.22 3.97 4.80 -6.83 -0.03 3.94 16 4 N -0.43 -9.14 2.60 -117.93 -0.31 -9.45 16 5 C -0.31 -7.61 9.32 -14.93 -0.14 -7.75 16 6 H 0.11 2.82 7.39 -52.49 -0.39 2.43 16 7 C 0.03 0.81 4.86 -17.47 -0.08 0.72 16 8 N -0.87 -21.11 9.48 55.50 0.53 -20.59 16 9 Si 0.93 19.04 29.60 -169.99 -5.03 14.00 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.47 9.33 7.21 -10.99 -0.08 9.25 16 14 O -0.56 -12.50 11.37 5.54 0.06 -12.44 16 15 C -0.16 -2.32 4.81 -91.77 -0.44 -2.76 16 16 H 0.12 1.61 6.73 -51.93 -0.35 1.26 16 17 C -0.15 -1.58 9.57 -26.75 -0.26 -1.84 16 18 C -0.10 -1.16 6.04 -91.80 -0.55 -1.72 16 19 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 20 C 0.01 0.19 4.36 -104.63 -0.46 -0.26 16 21 C -0.05 -0.83 6.16 -39.52 -0.24 -1.07 16 22 C 0.09 1.48 7.31 -39.38 -0.29 1.19 16 23 F -0.13 -2.18 17.18 2.25 0.04 -2.14 16 24 C 0.03 0.42 7.31 -39.32 -0.29 0.14 16 25 F -0.13 -2.20 17.10 2.25 0.04 -2.16 16 26 C 0.08 1.28 7.31 -39.38 -0.29 1.00 16 27 F -0.13 -2.01 17.18 2.25 0.04 -1.97 16 28 C -0.13 -1.83 9.71 -39.51 -0.38 -2.22 16 29 H 0.13 2.37 6.47 -51.93 -0.34 2.04 16 30 H 0.09 1.14 6.98 -51.93 -0.36 0.77 16 31 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.10 1.12 6.16 -51.93 -0.32 0.80 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.15 2.14 5.78 -52.48 -0.30 1.83 16 35 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -29.25 318.10 -5.32 -34.57 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -2.46 Total: 1.82 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -3.80 Total: 3.37 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 1.00 Total: -39.86 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.06 Total: -12.44 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.12 Total: -6.27 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.25 -5.32 -34.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185670036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.162 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds