Wall clock time and date at job start Tue Mar 31 2020 14:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46701 * 185.51654 * 3 2 1 5 5 C 1.37098 * 119.99900 * 264.25750 * 4 3 2 6 6 H 1.07997 * 119.99851 * 197.71396 * 5 4 3 7 7 C 1.38953 * 119.99967 * 17.71168 * 5 4 3 8 8 N 1.31408 * 119.99879 * 21.49261 * 7 5 4 9 9 Si 1.86795 * 119.99964 * 201.48698 * 7 5 4 10 10 H 1.48496 * 109.47118 * 59.99999 * 9 7 5 11 11 H 1.48494 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47037 * 300.00428 * 9 7 5 13 13 C 1.34775 * 119.99753 * 84.25862 * 4 3 2 14 14 O 1.21296 * 119.99901 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00622 * 359.97438 * 13 4 3 16 16 H 1.09005 * 115.55653 * 325.69460 * 15 13 4 17 17 C 1.53002 * 117.50080 * 111.37278 * 15 13 4 18 18 C 1.52997 * 117.50114 * 179.97438 * 15 13 4 19 19 H 1.09006 * 117.49426 * 145.02341 * 18 15 13 20 20 C 1.50693 * 117.52018 * 359.97438 * 18 15 13 21 21 C 1.38226 * 119.95776 * 299.84428 * 20 18 15 22 22 C 1.38427 * 120.04757 * 179.76831 * 21 20 18 23 23 F 1.35098 * 120.02359 * 180.27817 * 22 21 20 24 24 C 1.38599 * 119.95210 * 0.50105 * 22 21 20 25 25 F 1.35099 * 120.04342 * 179.72792 * 24 22 21 26 26 C 1.38597 * 119.91333 * 359.75077 * 24 22 21 27 27 F 1.35102 * 120.02474 * 180.02562 * 26 24 22 28 28 C 1.38230 * 119.95511 * 120.11096 * 20 18 15 29 29 H 1.08993 * 109.47011 * 65.51954 * 3 2 1 30 30 H 1.08996 * 109.46894 * 305.51491 * 3 2 1 31 31 H 0.97004 * 119.99869 * 179.97438 * 8 7 5 32 32 H 1.09007 * 117.49538 * 0.02562 * 17 15 13 33 33 H 1.08992 * 117.50064 * 214.98451 * 17 15 13 34 34 H 1.08007 * 119.97253 * 0.02562 * 21 20 18 35 35 H 1.07997 * 119.97648 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0956 1.3757 0.1328 5 6 3.4358 2.0933 -0.9848 6 1 4.0516 2.9758 -0.8931 7 6 2.9883 1.6852 -2.2354 8 7 1.9344 0.9065 -2.3341 9 14 3.8847 2.2435 -3.7761 10 1 5.2924 1.7731 -3.7277 11 1 3.2134 1.6755 -4.9727 12 1 3.8608 3.7264 -3.8528 13 6 3.2099 1.9352 1.3536 14 8 3.6140 3.0736 1.4636 15 6 2.8355 1.1467 2.5820 16 1 2.0027 0.4540 2.4604 17 6 3.9649 0.7343 3.5282 18 6 2.9881 1.8375 3.9386 19 1 2.2553 1.5995 4.7098 20 6 3.5017 3.2541 3.9448 21 6 4.7500 3.5380 3.4235 22 6 5.2218 4.8394 3.4238 23 9 6.4396 5.1172 2.9091 24 6 4.4457 5.8566 3.9568 25 9 4.9066 7.1265 3.9631 26 6 3.1965 5.5692 4.4838 27 9 2.4379 6.5590 5.0034 28 6 2.7262 4.2672 4.4768 29 1 2.9715 -0.4250 -0.9352 30 1 2.9716 -0.5962 0.8365 31 1 1.6217 0.6219 -3.2072 32 1 4.9787 1.0338 3.2624 33 1 3.8751 -0.2295 4.0292 34 1 5.3561 2.7444 3.0118 35 1 1.7531 4.0427 4.8879 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185670036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:04 Heat of formation + Delta-G solvation = -78.752322 kcal Electronic energy + Delta-G solvation = -27240.230999 eV Core-core repulsion = 22790.488871 eV Total energy + Delta-G solvation = -4449.742128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.75350 -50.14770 -49.45456 -41.39617 -39.68862 -37.71167 -36.91229 -35.99079 -33.69184 -31.58026 -31.20580 -29.18443 -27.27435 -25.25198 -24.53820 -24.08505 -21.97476 -20.42837 -19.71593 -19.30687 -18.89088 -18.43006 -18.03578 -17.81106 -17.73131 -16.95440 -16.57390 -16.44957 -16.11222 -15.97483 -15.93053 -15.62181 -15.38731 -15.17602 -14.86356 -14.65635 -14.13313 -13.87235 -13.75698 -13.43230 -13.25230 -13.21066 -12.88629 -12.84819 -12.68359 -12.33266 -12.29136 -12.20930 -12.08367 -11.43144 -11.31537 -11.05893 -10.43890 -9.92814 -9.73890 -9.24799 -8.39574 -5.92611 -0.25886 -0.07585 1.38468 1.47550 1.54833 1.74919 2.03338 2.21028 2.31766 2.36538 2.48120 2.95135 3.03510 3.16172 3.18565 3.31040 3.47415 3.51052 3.65924 3.92653 3.98441 4.06704 4.14465 4.43567 4.54162 4.63329 4.67627 4.84843 4.87121 4.92326 4.97682 5.09137 5.18923 5.42159 5.50571 5.69535 6.07585 6.43137 7.06033 7.16962 7.42388 8.00261 8.63629 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.004514 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.896679 B = 6202.051338 C = 7197.268306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.258 3.742 3 C 0.223 3.777 4 N -0.451 5.451 5 C -0.333 4.333 6 H 0.081 0.919 7 C 0.007 3.993 8 N -0.892 5.892 9 Si 0.977 3.023 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.288 1.288 13 C 0.471 3.529 14 O -0.593 6.593 15 C -0.183 4.183 16 H 0.134 0.866 17 C -0.117 4.117 18 C -0.093 4.093 19 H 0.164 0.836 20 C 0.010 3.990 21 C -0.056 4.056 22 C 0.067 3.933 23 F -0.136 7.136 24 C 0.003 3.997 25 F -0.137 7.137 26 C 0.075 3.925 27 F -0.131 7.131 28 C -0.123 4.123 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.273 0.727 32 H 0.100 0.900 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -4.831 13.911 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.059 4.059 3 C 0.096 3.904 4 N -0.170 5.170 5 C -0.461 4.461 6 H 0.099 0.901 7 C -0.195 4.195 8 N -0.530 5.530 9 Si 0.802 3.198 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.214 1.214 13 C 0.262 3.738 14 O -0.478 6.478 15 C -0.204 4.204 16 H 0.152 0.848 17 C -0.154 4.154 18 C -0.111 4.111 19 H 0.181 0.819 20 C 0.010 3.990 21 C -0.075 4.075 22 C 0.047 3.953 23 F -0.115 7.115 24 C -0.017 4.017 25 F -0.116 7.116 26 C 0.055 3.945 27 F -0.109 7.109 28 C -0.141 4.141 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.848 -4.264 13.765 14.915 hybrid contribution 0.649 1.472 -1.745 2.373 sum 4.497 -2.792 12.020 13.134 Atomic orbital electron populations 1.80916 1.14901 1.09871 1.13501 1.29837 0.95862 0.91150 0.89057 1.19079 0.79884 0.85222 1.06194 1.43740 1.56521 1.11529 1.05232 1.19503 1.30559 1.11588 0.84453 0.90092 1.25748 0.95210 0.97394 1.01170 1.69925 1.20240 1.36653 1.26231 0.85233 0.79232 0.77755 0.77574 1.18489 1.20611 1.21450 1.20194 0.82224 0.86848 0.84522 1.90581 1.51466 1.20075 1.85702 1.22325 1.05142 1.04126 0.88855 0.84832 1.23382 0.94029 0.99983 0.97968 1.21241 1.04416 0.88125 0.97353 0.81889 1.18839 0.91390 0.95378 0.93436 1.20940 0.97100 0.93817 0.95664 1.17400 0.82445 0.93655 1.01777 1.91477 1.40630 1.94468 1.84931 1.17742 0.95200 0.79535 1.09262 1.91458 1.88814 1.36143 1.95171 1.17294 0.88457 0.86980 1.01804 1.91499 1.74453 1.60560 1.84423 1.21094 1.02343 0.88579 1.02126 0.86365 0.83945 0.91728 0.88195 0.82827 0.83201 0.80569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.51 18.54 20.01 0.37 -22.14 16 2 C 0.26 10.23 12.80 89.44 1.15 11.37 16 3 C 0.22 7.56 4.80 84.57 0.41 7.96 16 4 N -0.45 -18.72 2.60 -645.42 -1.68 -20.39 16 5 C -0.33 -16.32 9.32 84.04 0.78 -15.54 16 6 H 0.08 4.34 7.39 -2.91 -0.02 4.32 16 7 C 0.01 0.33 4.86 84.93 0.41 0.74 16 8 N -0.89 -43.06 9.48 21.66 0.21 -42.85 16 9 Si 0.98 39.47 29.60 68.60 2.03 41.50 16 10 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 11 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 12 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.47 17.87 7.21 87.66 0.63 18.51 16 14 O -0.59 -26.31 11.37 -3.08 -0.04 -26.35 16 15 C -0.18 -4.51 4.81 -11.54 -0.06 -4.56 16 16 H 0.13 2.97 6.73 -2.38 -0.02 2.96 16 17 C -0.12 -1.81 9.57 30.58 0.29 -1.52 16 18 C -0.09 -1.80 6.04 -11.56 -0.07 -1.87 16 19 H 0.16 1.95 8.14 -2.38 -0.02 1.93 16 20 C 0.01 0.26 4.36 -19.87 -0.09 0.18 16 21 C -0.06 -1.69 6.16 22.31 0.14 -1.56 16 22 C 0.07 2.30 7.31 22.40 0.16 2.46 16 23 F -0.14 -4.87 17.18 44.97 0.77 -4.10 16 24 C 0.00 0.12 7.31 22.44 0.16 0.28 16 25 F -0.14 -4.90 17.10 44.97 0.77 -4.13 16 26 C 0.07 2.29 7.31 22.40 0.16 2.45 16 27 F -0.13 -3.98 17.18 44.97 0.77 -3.21 16 28 C -0.12 -3.15 9.71 22.31 0.22 -2.93 16 29 H 0.12 4.27 6.47 -2.39 -0.02 4.25 16 30 H 0.14 3.15 6.98 -2.39 -0.02 3.14 16 31 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 32 H 0.10 1.72 6.16 -2.38 -0.01 1.70 16 33 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.15 4.25 5.78 -2.91 -0.02 4.24 16 35 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -66.60 318.10 8.70 -57.90 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.19 Total: 7.80 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 4.31 Total: 15.98 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.10 Total: -85.39 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.04 Total: -26.35 kcal Atomic # 9 Polarization: -13.75 SS G_CDS: 2.31 Total: -11.43 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -66.60 8.70 -57.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185670036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.854 kcal (2) G-P(sol) polarization free energy of solvation -66.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds