Wall clock time and date at job start Tue Mar 31 2020 14:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46717 * 205.89875 * 3 2 1 5 5 C 1.37105 * 119.99892 * 263.94544 * 4 3 2 6 6 H 1.07997 * 120.00180 * 196.14213 * 5 4 3 7 7 C 1.38943 * 119.99606 * 16.14961 * 5 4 3 8 8 N 1.31411 * 120.00353 * 21.78721 * 7 5 4 9 9 Si 1.86804 * 119.99927 * 201.78563 * 7 5 4 10 10 H 1.48499 * 109.47262 * 85.41491 * 9 7 5 11 11 H 1.48495 * 109.47362 * 205.42050 * 9 7 5 12 12 H 1.48504 * 109.47001 * 325.42022 * 9 7 5 13 13 C 1.34774 * 120.00376 * 83.95152 * 4 3 2 14 14 O 1.21290 * 120.00298 * 179.97438 * 13 4 3 15 15 C 1.50707 * 119.99654 * 359.97438 * 13 4 3 16 16 H 1.09001 * 115.56169 * 325.70142 * 15 13 4 17 17 C 1.53002 * 117.49726 * 111.39476 * 15 13 4 18 18 C 1.53001 * 60.03076 * 107.49924 * 17 15 13 19 19 H 1.09000 * 117.50151 * 252.47599 * 18 17 15 20 20 C 1.50706 * 117.49716 * 107.47671 * 18 17 15 21 21 C 1.38221 * 119.95518 * 351.11804 * 20 18 17 22 22 C 1.38433 * 120.04188 * 179.72920 * 21 20 18 23 23 F 1.35098 * 120.02038 * 180.29761 * 22 21 20 24 24 C 1.38598 * 119.95619 * 0.53915 * 22 21 20 25 25 F 1.35101 * 120.04518 * 179.74828 * 24 22 21 26 26 C 1.38599 * 119.90848 * 359.73697 * 24 22 21 27 27 F 1.35103 * 120.01923 * 180.02562 * 26 24 22 28 28 C 1.38226 * 119.95105 * 171.38904 * 20 18 17 29 29 H 1.09004 * 109.47307 * 85.89862 * 3 2 1 30 30 H 1.09000 * 109.47241 * 325.89318 * 3 2 1 31 31 H 0.97006 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.08994 * 117.49741 * 359.97438 * 17 15 13 33 33 H 1.09002 * 117.49624 * 214.99888 * 17 15 13 34 34 H 1.08005 * 119.97805 * 359.97438 * 21 20 18 35 35 H 1.08000 * 119.98447 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.2434 0.6033 5 6 3.4418 2.3032 -0.1948 6 1 4.0363 3.1103 0.2070 7 6 3.0274 2.3388 -1.5205 8 7 1.9891 1.6302 -1.9037 9 14 3.9462 3.3939 -2.7583 10 1 5.1011 2.6319 -3.2975 11 1 3.0330 3.7614 -3.8700 12 1 4.4351 4.6272 -2.0910 13 6 3.2043 1.3450 1.9428 14 8 3.6085 2.3737 2.4423 15 6 2.8235 0.1803 2.8201 16 1 1.9910 -0.4256 2.4623 17 6 3.9480 -0.5366 3.5700 18 6 2.9691 0.3577 4.3335 19 1 3.3404 1.3166 4.6950 20 6 1.9506 -0.3189 5.2145 21 6 1.8035 -1.6925 5.1701 22 6 0.8724 -2.3164 5.9827 23 9 0.7331 -3.6596 5.9433 24 6 0.0797 -1.5617 6.8329 25 9 -0.8331 -2.1682 7.6229 26 6 0.2249 -0.1838 6.8717 27 9 -0.5463 0.5540 7.7000 28 6 1.1610 0.4357 6.0617 29 1 2.9714 -0.0727 -1.0251 30 1 2.9717 -0.8501 0.5762 31 1 1.6996 1.6555 -2.8292 32 1 4.9633 -0.1661 3.4286 33 1 3.8556 -1.6143 3.7053 34 1 2.4181 -2.2799 4.5040 35 1 1.2747 1.5093 6.0921 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185670057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:07 Heat of formation + Delta-G solvation = -74.318789 kcal Electronic energy + Delta-G solvation = -26308.767364 eV Core-core repulsion = 21859.217489 eV Total energy + Delta-G solvation = -4449.549875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.91535 -49.35604 -48.60560 -40.06580 -38.77335 -36.44770 -35.54491 -34.35964 -31.93402 -30.87592 -30.44674 -27.60067 -25.77364 -24.38843 -23.62221 -22.88258 -21.05060 -19.03204 -18.48267 -18.08644 -17.96227 -17.54027 -16.94209 -16.87210 -16.25706 -16.04465 -15.64317 -15.43809 -15.08471 -15.00736 -14.75493 -14.51903 -14.29018 -13.64122 -13.62309 -13.10977 -13.05621 -12.69523 -12.47472 -12.17917 -12.01622 -11.90145 -11.71511 -11.53589 -11.34441 -11.24758 -10.66991 -10.62666 -10.48708 -10.45090 -10.25452 -9.35545 -9.19408 -8.90070 -8.69207 -8.16119 -6.60436 -4.08762 0.44478 0.52775 2.76360 3.02433 3.13241 3.17168 3.20480 3.31900 3.60046 3.85951 3.90973 3.93638 4.00978 4.11760 4.17270 4.22813 4.60571 4.72598 4.80381 4.90202 4.98348 5.14889 5.17005 5.22072 5.38155 5.54655 5.59393 5.62629 5.76620 5.88203 6.00272 6.10684 6.26952 6.37417 6.44906 7.38134 7.78374 8.17318 8.64700 8.89204 9.09282 9.62202 10.45410 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.003109 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.925668 B = 9003.927878 C = 9292.097542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.243 3.757 3 C 0.220 3.780 4 N -0.434 5.434 5 C -0.316 4.316 6 H 0.111 0.889 7 C 0.033 3.967 8 N -0.875 5.875 9 Si 0.929 3.071 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.479 3.521 14 O -0.572 6.572 15 C -0.155 4.155 16 H 0.116 0.884 17 C -0.146 4.146 18 C -0.101 4.101 19 H 0.137 0.863 20 C 0.009 3.991 21 C -0.139 4.139 22 C 0.103 3.897 23 F -0.120 7.120 24 C 0.021 3.979 25 F -0.121 7.121 26 C 0.103 3.897 27 F -0.120 7.120 28 C -0.126 4.126 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.275 0.725 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.157 0.843 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.109 -8.906 11.548 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.076 4.076 3 C 0.092 3.908 4 N -0.153 5.153 5 C -0.442 4.442 6 H 0.128 0.872 7 C -0.171 4.171 8 N -0.513 5.513 9 Si 0.755 3.245 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.268 3.732 14 O -0.455 6.455 15 C -0.177 4.177 16 H 0.133 0.867 17 C -0.183 4.183 18 C -0.119 4.119 19 H 0.154 0.846 20 C 0.009 3.991 21 C -0.158 4.158 22 C 0.083 3.917 23 F -0.099 7.099 24 C -0.001 4.001 25 F -0.099 7.099 26 C 0.083 3.917 27 F -0.098 7.098 28 C -0.145 4.145 29 H 0.148 0.852 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.174 0.826 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.455 -8.448 11.646 14.461 hybrid contribution 0.056 0.242 -0.591 0.641 sum 1.511 -8.206 11.055 13.851 Atomic orbital electron populations 1.80924 1.13601 1.09523 1.10915 1.29363 0.95412 0.91709 0.91104 1.18820 0.81475 0.87582 1.02873 1.43544 1.55845 1.12050 1.03873 1.19759 1.31433 1.01883 0.91171 0.87161 1.25286 0.95048 0.98166 0.98600 1.69889 1.20732 1.41903 1.18804 0.85891 0.79108 0.80048 0.79458 1.19981 1.21063 1.19330 1.19044 0.84250 0.87749 0.82187 1.90548 1.50819 1.30994 1.73149 1.22491 1.02144 1.00908 0.92111 0.86651 1.23149 0.95858 0.97968 1.01319 1.21036 0.98307 1.01539 0.91022 0.84550 1.18917 0.94526 0.91596 0.94098 1.21105 0.99085 0.95169 1.00450 1.17256 0.98139 0.77773 0.98530 1.91561 1.94861 1.28120 1.95309 1.17553 0.94909 0.89907 0.97691 1.91543 1.63793 1.82947 1.71653 1.17298 0.94032 0.86659 0.93758 1.91565 1.73008 1.76014 1.69230 1.21049 0.95056 1.02338 0.96062 0.85175 0.89660 0.91468 0.87123 0.87866 0.82554 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.78 18.54 42.15 0.78 -9.99 16 2 C 0.24 5.09 12.89 -20.76 -0.27 4.82 16 3 C 0.22 4.06 4.80 -6.83 -0.03 4.03 16 4 N -0.43 -9.44 2.60 -117.93 -0.31 -9.75 16 5 C -0.32 -7.70 9.35 -14.93 -0.14 -7.84 16 6 H 0.11 2.85 7.37 -52.49 -0.39 2.46 16 7 C 0.03 0.78 4.87 -17.47 -0.09 0.69 16 8 N -0.87 -21.13 9.47 55.50 0.53 -20.61 16 9 Si 0.93 18.78 29.61 -169.99 -5.03 13.75 16 10 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 13 C 0.48 9.90 7.35 -10.98 -0.08 9.82 16 14 O -0.57 -13.73 15.90 5.55 0.09 -13.64 16 15 C -0.16 -2.33 4.44 -91.73 -0.41 -2.73 16 16 H 0.12 1.68 6.71 -51.93 -0.35 1.33 16 17 C -0.15 -1.60 9.56 -26.73 -0.26 -1.86 16 18 C -0.10 -1.27 5.56 -91.73 -0.51 -1.78 16 19 H 0.14 1.85 7.67 -51.93 -0.40 1.45 16 20 C 0.01 0.10 5.61 -104.63 -0.59 -0.48 16 21 C -0.14 -1.44 9.27 -39.52 -0.37 -1.80 16 22 C 0.10 1.19 7.31 -39.38 -0.29 0.90 16 23 F -0.12 -1.43 17.18 2.25 0.04 -1.39 16 24 C 0.02 0.25 7.31 -39.32 -0.29 -0.03 16 25 F -0.12 -1.61 17.10 2.25 0.04 -1.57 16 26 C 0.10 1.23 7.31 -39.38 -0.29 0.95 16 27 F -0.12 -1.51 17.18 2.25 0.04 -1.47 16 28 C -0.13 -1.42 9.71 -39.51 -0.38 -1.80 16 29 H 0.13 2.48 6.34 -51.93 -0.33 2.16 16 30 H 0.09 1.16 6.99 -51.93 -0.36 0.80 16 31 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 32 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.10 0.82 6.18 -51.93 -0.32 0.50 16 34 H 0.16 1.28 6.02 -52.48 -0.32 0.96 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 326.01 15.07 4.91 4.91 Total: -1.00 -29.36 326.01 -5.34 -34.70 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.44 Total: 2.19 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -3.98 Total: 2.87 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 1.00 Total: -40.35 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.12 Total: -4.43 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.36 -5.34 -34.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185670057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.623 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds