Wall clock time and date at job start Tue Mar 31 2020 14:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46717 * 205.89875 * 3 2 1 5 5 C 1.37105 * 119.99892 * 263.94544 * 4 3 2 6 6 H 1.07997 * 120.00180 * 196.14213 * 5 4 3 7 7 C 1.38943 * 119.99606 * 16.14961 * 5 4 3 8 8 N 1.31411 * 120.00353 * 21.78721 * 7 5 4 9 9 Si 1.86804 * 119.99927 * 201.78563 * 7 5 4 10 10 H 1.48499 * 109.47262 * 85.41491 * 9 7 5 11 11 H 1.48495 * 109.47362 * 205.42050 * 9 7 5 12 12 H 1.48504 * 109.47001 * 325.42022 * 9 7 5 13 13 C 1.34774 * 120.00376 * 83.95152 * 4 3 2 14 14 O 1.21290 * 120.00298 * 179.97438 * 13 4 3 15 15 C 1.50707 * 119.99654 * 359.97438 * 13 4 3 16 16 H 1.09001 * 115.56169 * 325.70142 * 15 13 4 17 17 C 1.53002 * 117.49726 * 111.39476 * 15 13 4 18 18 C 1.53001 * 60.03076 * 107.49924 * 17 15 13 19 19 H 1.09000 * 117.50151 * 252.47599 * 18 17 15 20 20 C 1.50706 * 117.49716 * 107.47671 * 18 17 15 21 21 C 1.38221 * 119.95518 * 351.11804 * 20 18 17 22 22 C 1.38433 * 120.04188 * 179.72920 * 21 20 18 23 23 F 1.35098 * 120.02038 * 180.29761 * 22 21 20 24 24 C 1.38598 * 119.95619 * 0.53915 * 22 21 20 25 25 F 1.35101 * 120.04518 * 179.74828 * 24 22 21 26 26 C 1.38599 * 119.90848 * 359.73697 * 24 22 21 27 27 F 1.35103 * 120.01923 * 180.02562 * 26 24 22 28 28 C 1.38226 * 119.95105 * 171.38904 * 20 18 17 29 29 H 1.09004 * 109.47307 * 85.89862 * 3 2 1 30 30 H 1.09000 * 109.47241 * 325.89318 * 3 2 1 31 31 H 0.97006 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.08994 * 117.49741 * 359.97438 * 17 15 13 33 33 H 1.09002 * 117.49624 * 214.99888 * 17 15 13 34 34 H 1.08005 * 119.97805 * 359.97438 * 21 20 18 35 35 H 1.08000 * 119.98447 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.2434 0.6033 5 6 3.4418 2.3032 -0.1948 6 1 4.0363 3.1103 0.2070 7 6 3.0274 2.3388 -1.5205 8 7 1.9891 1.6302 -1.9037 9 14 3.9462 3.3939 -2.7583 10 1 5.1011 2.6319 -3.2975 11 1 3.0330 3.7614 -3.8700 12 1 4.4351 4.6272 -2.0910 13 6 3.2043 1.3450 1.9428 14 8 3.6085 2.3737 2.4423 15 6 2.8235 0.1803 2.8201 16 1 1.9910 -0.4256 2.4623 17 6 3.9480 -0.5366 3.5700 18 6 2.9691 0.3577 4.3335 19 1 3.3404 1.3166 4.6950 20 6 1.9506 -0.3189 5.2145 21 6 1.8035 -1.6925 5.1701 22 6 0.8724 -2.3164 5.9827 23 9 0.7331 -3.6596 5.9433 24 6 0.0797 -1.5617 6.8329 25 9 -0.8331 -2.1682 7.6229 26 6 0.2249 -0.1838 6.8717 27 9 -0.5463 0.5540 7.7000 28 6 1.1610 0.4357 6.0617 29 1 2.9714 -0.0727 -1.0251 30 1 2.9717 -0.8501 0.5762 31 1 1.6996 1.6555 -2.8292 32 1 4.9633 -0.1661 3.4286 33 1 3.8556 -1.6143 3.7053 34 1 2.4181 -2.2799 4.5040 35 1 1.2747 1.5093 6.0921 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185670057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:07 Heat of formation + Delta-G solvation = -89.175315 kcal Electronic energy + Delta-G solvation = -26309.411592 eV Core-core repulsion = 21859.217489 eV Total energy + Delta-G solvation = -4450.194103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.86831 -50.27948 -49.56381 -41.23558 -40.06191 -37.83294 -36.99184 -36.06095 -33.69226 -31.76318 -31.39842 -29.20586 -27.33740 -25.37066 -24.70195 -24.05902 -22.01573 -20.45324 -19.73079 -19.44216 -18.98719 -18.53908 -18.24112 -17.86750 -17.79101 -17.07048 -16.61193 -16.57016 -16.37549 -16.05328 -15.97765 -15.69598 -15.48392 -15.14395 -15.03289 -14.69969 -14.09024 -13.85792 -13.73219 -13.42614 -13.35555 -13.30069 -12.99643 -12.88641 -12.81768 -12.43836 -12.29327 -12.18858 -12.09487 -11.53044 -11.44531 -11.08540 -10.42448 -10.06417 -9.91508 -9.76256 -8.39576 -5.93747 -0.47627 -0.33992 1.39913 1.50733 1.59558 1.71545 1.97606 2.03532 2.23499 2.26927 2.37000 2.86635 2.96874 3.02367 3.05364 3.16133 3.33018 3.35251 3.63027 3.80025 3.92286 3.94629 4.03152 4.32705 4.36933 4.46779 4.62001 4.65331 4.71506 4.93370 4.94302 4.97164 5.16886 5.32282 5.48427 5.50746 6.05181 6.41528 7.01410 7.14149 7.38765 7.95326 8.63911 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.003109 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.925668 B = 9003.927878 C = 9292.097542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.257 3.743 3 C 0.222 3.778 4 N -0.450 5.450 5 C -0.341 4.341 6 H 0.084 0.916 7 C 0.007 3.993 8 N -0.892 5.892 9 Si 0.984 3.016 10 H -0.258 1.258 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.476 3.524 14 O -0.616 6.616 15 C -0.177 4.177 16 H 0.126 0.874 17 C -0.109 4.109 18 C -0.096 4.096 19 H 0.122 0.878 20 C 0.008 3.992 21 C -0.121 4.121 22 C 0.101 3.899 23 F -0.122 7.122 24 C 0.010 3.990 25 F -0.130 7.130 26 C 0.093 3.907 27 F -0.127 7.127 28 C -0.124 4.124 29 H 0.125 0.875 30 H 0.142 0.858 31 H 0.274 0.726 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.188 0.812 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 -10.825 11.609 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.061 4.061 3 C 0.095 3.905 4 N -0.169 5.169 5 C -0.468 4.468 6 H 0.102 0.898 7 C -0.195 4.195 8 N -0.531 5.531 9 Si 0.809 3.191 10 H -0.183 1.183 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.267 3.733 14 O -0.502 6.502 15 C -0.198 4.198 16 H 0.144 0.856 17 C -0.146 4.146 18 C -0.115 4.115 19 H 0.140 0.860 20 C 0.007 3.993 21 C -0.139 4.139 22 C 0.081 3.919 23 F -0.100 7.100 24 C -0.011 4.011 25 F -0.109 7.109 26 C 0.073 3.927 27 F -0.106 7.106 28 C -0.143 4.143 29 H 0.142 0.858 30 H 0.160 0.840 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.165 0.835 34 H 0.205 0.795 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.665 -10.394 11.709 15.882 hybrid contribution -0.312 0.888 -0.534 1.082 sum 2.353 -9.506 11.175 14.858 Atomic orbital electron populations 1.80928 1.14897 1.10867 1.12376 1.29887 0.95908 0.90463 0.89833 1.19150 0.79802 0.88014 1.03541 1.43707 1.56259 1.12509 1.04412 1.19635 1.32226 1.02711 0.92239 0.89812 1.25835 0.95282 0.99066 0.99353 1.69968 1.21329 1.42922 1.18888 0.85071 0.78367 0.78450 0.77223 1.18280 1.21404 1.20392 1.20000 0.82248 0.88794 0.82289 1.90517 1.52352 1.33287 1.74003 1.22293 1.04904 1.00099 0.92490 0.85610 1.23383 0.94510 0.99959 0.96737 1.20949 0.99190 1.01909 0.89433 0.86031 1.18808 0.94380 0.92028 0.94066 1.21326 0.98243 0.94691 0.99660 1.17295 0.98334 0.77670 0.98630 1.91562 1.94907 1.28208 1.95326 1.17784 0.95118 0.90179 0.98019 1.91515 1.64250 1.83103 1.72030 1.17353 0.94488 0.86625 0.94212 1.91543 1.73305 1.76190 1.69551 1.21178 0.94597 1.02850 0.95692 0.85759 0.84025 0.91578 0.87081 0.83477 0.79504 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.05 18.54 20.01 0.37 -22.68 16 2 C 0.26 10.45 12.89 89.44 1.15 11.60 16 3 C 0.22 7.75 4.80 84.57 0.41 8.15 16 4 N -0.45 -19.32 2.60 -645.40 -1.68 -21.00 16 5 C -0.34 -16.84 9.35 84.04 0.79 -16.06 16 6 H 0.08 4.50 7.37 -2.91 -0.02 4.48 16 7 C 0.01 0.32 4.87 84.92 0.41 0.74 16 8 N -0.89 -42.89 9.47 21.66 0.21 -42.68 16 9 Si 0.98 38.51 29.61 68.60 2.03 40.54 16 10 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 11 H -0.29 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 13 C 0.48 19.33 7.35 87.66 0.64 19.98 16 14 O -0.62 -29.99 15.90 -3.06 -0.05 -30.04 16 15 C -0.18 -4.81 4.44 -11.51 -0.05 -4.86 16 16 H 0.13 3.20 6.71 -2.39 -0.02 3.19 16 17 C -0.11 -1.91 9.56 30.60 0.29 -1.61 16 18 C -0.10 -2.16 5.56 -11.51 -0.06 -2.23 16 19 H 0.12 3.16 7.67 -2.39 -0.02 3.14 16 20 C 0.01 0.15 5.61 -19.87 -0.11 0.04 16 21 C -0.12 -2.02 9.27 22.31 0.21 -1.81 16 22 C 0.10 2.06 7.31 22.40 0.16 2.22 16 23 F -0.12 -2.57 17.18 44.97 0.77 -1.80 16 24 C 0.01 0.23 7.31 22.44 0.16 0.40 16 25 F -0.13 -3.38 17.10 44.97 0.77 -2.62 16 26 C 0.09 2.15 7.31 22.40 0.16 2.32 16 27 F -0.13 -3.18 17.18 44.97 0.77 -2.41 16 28 C -0.12 -2.61 9.71 22.31 0.22 -2.40 16 29 H 0.12 4.56 6.34 -2.39 -0.02 4.54 16 30 H 0.14 3.30 6.99 -2.39 -0.02 3.28 16 31 H 0.27 12.79 8.31 -92.70 -0.77 12.02 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.15 1.32 6.18 -2.39 -0.01 1.31 16 34 H 0.19 1.91 6.02 -2.91 -0.02 1.89 16 35 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -65.85 326.01 8.76 -57.09 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.19 Total: 9.11 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 4.38 Total: 16.48 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -1.10 Total: -86.36 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.05 Total: -30.04 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 2.31 Total: -6.83 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -65.85 8.76 -57.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185670057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.087 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds