Wall clock time and date at job start Tue Mar 31 2020 14:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47267 * 45.43373 * 3 2 1 5 5 C 1.37097 * 120.00245 * 264.60167 * 4 3 2 6 6 H 1.07999 * 120.00397 * 195.15699 * 5 4 3 7 7 C 1.38957 * 119.99669 * 15.14841 * 5 4 3 8 8 N 1.31405 * 119.99869 * 21.28490 * 7 5 4 9 9 Si 1.86803 * 119.99710 * 201.28879 * 7 5 4 10 10 H 1.48489 * 109.47361 * 84.81820 * 9 7 5 11 11 H 1.48502 * 109.46653 * 204.81832 * 9 7 5 12 12 H 1.48501 * 109.46971 * 324.81121 * 9 7 5 13 13 C 1.34777 * 120.00188 * 84.59928 * 4 3 2 14 14 O 1.21296 * 120.00078 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00270 * 0.02562 * 13 4 3 16 16 H 1.09008 * 115.54852 * 34.32515 * 15 13 4 17 17 C 1.52998 * 117.49804 * 248.62513 * 15 13 4 18 18 C 1.52996 * 117.50467 * 179.97438 * 15 13 4 19 19 H 1.08997 * 117.49474 * 359.97438 * 18 15 13 20 20 C 1.50700 * 117.50271 * 214.97896 * 18 15 13 21 21 C 1.38219 * 119.95869 * 119.99479 * 20 18 15 22 22 C 1.38430 * 120.04890 * 179.97438 * 21 20 18 23 23 F 1.35092 * 120.02525 * 180.02562 * 22 21 20 24 24 C 1.38603 * 119.94998 * 0.02562 * 22 21 20 25 25 F 1.35096 * 120.04129 * 179.97438 * 24 22 21 26 26 C 1.38594 * 119.91442 * 0.24685 * 24 22 21 27 27 F 1.35095 * 120.02650 * 179.74757 * 26 24 22 28 28 C 1.38231 * 119.95252 * 299.97825 * 20 18 15 29 29 H 1.08993 * 109.47281 * 285.42701 * 3 2 1 30 30 H 1.09005 * 109.46923 * 165.42911 * 3 2 1 31 31 H 0.96998 * 119.99654 * 179.97438 * 8 7 5 32 32 H 1.09003 * 117.50015 * 145.01338 * 17 15 13 33 33 H 1.08995 * 117.49913 * 359.97438 * 17 15 13 34 34 H 1.08008 * 119.97709 * 0.02562 * 21 20 18 35 35 H 1.08002 * 119.97766 * 0.04259 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9683 -0.9840 5 6 3.4312 -2.2377 -0.5885 6 1 4.0131 -2.8712 -1.2415 7 6 3.0216 -2.7092 0.6528 8 7 2.0010 -2.1506 1.2637 9 14 3.9219 -4.1369 1.4532 10 1 5.1038 -3.6251 2.1921 11 1 3.0096 -4.8302 2.3978 12 1 4.3677 -5.0905 0.4057 13 6 3.2178 -0.6120 -2.2781 14 8 3.6229 -1.4141 -3.0928 15 6 2.8507 0.7835 -2.7130 16 1 3.0584 1.5714 -1.9889 17 6 1.6132 0.9451 -3.5981 18 6 3.0106 1.1267 -4.1954 19 1 3.3817 0.3432 -4.8561 20 6 3.4422 2.5282 -4.5426 21 6 4.6143 2.7353 -5.2452 22 6 5.0123 4.0219 -5.5656 23 9 6.1577 4.2238 -6.2528 24 6 4.2346 5.1028 -5.1808 25 9 4.6215 6.3592 -5.4921 26 6 3.0625 4.8933 -4.4715 27 9 2.3055 5.9455 -4.0909 28 6 2.6651 3.6048 -4.1583 29 1 2.9715 -0.2725 0.9906 30 1 2.9709 0.9955 -0.2586 31 1 1.7148 -2.4800 2.1300 32 1 1.0064 1.8394 -3.4564 33 1 1.0649 0.0421 -3.8662 34 1 5.2198 1.8928 -5.5452 35 1 1.7498 3.4409 -3.6089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185670076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:10 Heat of formation + Delta-G solvation = -72.805353 kcal Electronic energy + Delta-G solvation = -26239.844508 eV Core-core repulsion = 21790.360260 eV Total energy + Delta-G solvation = -4449.484248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.94492 -49.38477 -48.63503 -40.06976 -38.78297 -36.44229 -35.52628 -34.34917 -31.93966 -30.90011 -30.45957 -27.61104 -25.77188 -24.39193 -23.63991 -22.88896 -21.04021 -19.06345 -18.50841 -18.08397 -17.96809 -17.55502 -16.96133 -16.81252 -16.37394 -16.07031 -15.67205 -15.40887 -15.11259 -15.01124 -14.71418 -14.54670 -14.28576 -13.81794 -13.39937 -13.15822 -13.04961 -12.75582 -12.49730 -12.13175 -12.01417 -11.88740 -11.73720 -11.53422 -11.35396 -11.24717 -10.70260 -10.57205 -10.46728 -10.39656 -10.24531 -9.36207 -9.22272 -8.91700 -8.69156 -8.17152 -6.60861 -4.08805 0.41753 0.49936 2.75608 3.01833 3.10310 3.16986 3.20119 3.33515 3.59352 3.85235 3.91895 3.92205 4.01541 4.10673 4.16456 4.23768 4.62578 4.72304 4.78312 4.92874 4.96762 5.12140 5.19199 5.30339 5.37302 5.45433 5.53937 5.60401 5.81948 5.88588 6.01871 6.15879 6.28155 6.34998 6.47330 7.37414 7.77611 8.17063 8.67365 8.88898 9.08828 9.61851 10.44636 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.003099 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.499907 B = 9032.325509 C = 9793.944895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.247 3.753 3 C 0.219 3.781 4 N -0.434 5.434 5 C -0.315 4.315 6 H 0.111 0.889 7 C 0.033 3.967 8 N -0.876 5.876 9 Si 0.929 3.071 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.478 3.522 14 O -0.573 6.573 15 C -0.154 4.154 16 H 0.119 0.881 17 C -0.143 4.143 18 C -0.102 4.102 19 H 0.136 0.864 20 C 0.011 3.989 21 C -0.126 4.126 22 C 0.103 3.897 23 F -0.120 7.120 24 C 0.020 3.980 25 F -0.121 7.121 26 C 0.104 3.896 27 F -0.120 7.120 28 C -0.140 4.140 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.275 0.725 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.158 0.842 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 12.495 -7.702 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.071 4.071 3 C 0.092 3.908 4 N -0.153 5.153 5 C -0.442 4.442 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.514 5.514 9 Si 0.755 3.245 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.267 3.733 14 O -0.456 6.456 15 C -0.176 4.176 16 H 0.137 0.863 17 C -0.181 4.181 18 C -0.121 4.121 19 H 0.154 0.846 20 C 0.011 3.989 21 C -0.145 4.145 22 C 0.082 3.918 23 F -0.098 7.098 24 C -0.001 4.001 25 F -0.100 7.100 26 C 0.083 3.917 27 F -0.099 7.099 28 C -0.159 4.159 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.176 0.824 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.536 12.135 -7.925 14.714 hybrid contribution 0.821 -0.172 0.599 1.031 sum 3.356 11.962 -7.326 14.423 Atomic orbital electron populations 1.80902 1.13547 1.10912 1.09817 1.29261 0.95295 0.90771 0.91766 1.18825 0.81715 0.92326 0.97976 1.43558 1.55795 1.11450 1.04470 1.19774 1.32112 0.90595 1.01670 0.87136 1.25285 0.95074 0.99247 0.97489 1.69871 1.21566 1.43101 1.16898 0.85884 0.79069 0.80480 0.79026 1.19973 1.21047 1.19337 1.19046 0.84318 0.87570 0.82376 1.90550 1.50714 1.53068 1.51254 1.22463 1.03678 0.98669 0.92745 0.86317 1.23103 0.89653 1.03954 1.01358 1.21054 1.01103 0.92897 0.97019 0.84576 1.18922 0.92180 0.94064 0.93784 1.21039 0.97854 0.95194 1.00441 1.17293 0.84421 0.92623 0.97434 1.91562 1.46044 1.95696 1.76543 1.17553 0.96484 0.80055 1.06048 1.91542 1.90649 1.36470 1.91307 1.17266 0.89711 0.85055 0.99627 1.91565 1.74111 1.55190 1.88986 1.21141 1.02599 0.89151 1.02989 0.85104 0.89899 0.91455 0.87954 0.87451 0.82443 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.52 18.54 42.15 0.78 -9.74 16 2 C 0.25 5.09 13.59 -20.76 -0.28 4.81 16 3 C 0.22 4.03 4.91 -6.83 -0.03 4.00 16 4 N -0.43 -9.41 2.60 -117.93 -0.31 -9.72 16 5 C -0.31 -7.67 9.37 -14.93 -0.14 -7.81 16 6 H 0.11 2.86 7.35 -52.49 -0.39 2.47 16 7 C 0.03 0.77 4.90 -17.47 -0.09 0.69 16 8 N -0.88 -20.97 9.37 55.50 0.52 -20.45 16 9 Si 0.93 18.79 29.60 -169.99 -5.03 13.76 16 10 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 13 C 0.48 9.84 7.35 -10.99 -0.08 9.76 16 14 O -0.57 -13.72 15.89 5.54 0.09 -13.63 16 15 C -0.15 -2.29 4.82 -91.77 -0.44 -2.73 16 16 H 0.12 1.48 6.52 -51.92 -0.34 1.14 16 17 C -0.14 -1.87 9.56 -26.71 -0.26 -2.12 16 18 C -0.10 -1.28 5.55 -91.75 -0.51 -1.79 16 19 H 0.14 1.85 7.67 -51.93 -0.40 1.45 16 20 C 0.01 0.12 5.61 -104.63 -0.59 -0.47 16 21 C -0.13 -1.27 9.71 -39.52 -0.38 -1.65 16 22 C 0.10 1.11 7.31 -39.38 -0.29 0.83 16 23 F -0.12 -1.38 17.18 2.25 0.04 -1.34 16 24 C 0.02 0.22 7.31 -39.32 -0.29 -0.06 16 25 F -0.12 -1.51 17.10 2.25 0.04 -1.47 16 26 C 0.10 1.12 7.31 -39.38 -0.29 0.83 16 27 F -0.12 -1.38 17.18 2.25 0.04 -1.34 16 28 C -0.14 -1.38 9.27 -39.51 -0.37 -1.75 16 29 H 0.13 2.51 6.29 -51.93 -0.33 2.18 16 30 H 0.08 1.14 6.24 -51.93 -0.32 0.81 16 31 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 32 H 0.10 1.08 6.17 -51.93 -0.32 0.76 16 33 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.16 1.34 6.01 -52.49 -0.32 1.02 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -28.71 326.13 -5.34 -34.05 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.39 Total: 2.44 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -4.03 Total: 2.52 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.99 Total: -39.91 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.12 Total: -4.15 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.71 -5.34 -34.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185670076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.757 kcal (2) G-P(sol) polarization free energy of solvation -28.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds