Wall clock time and date at job start Tue Mar 31 2020 14:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47267 * 45.43373 * 3 2 1 5 5 C 1.37097 * 120.00245 * 264.60167 * 4 3 2 6 6 H 1.07999 * 120.00397 * 195.15699 * 5 4 3 7 7 C 1.38957 * 119.99669 * 15.14841 * 5 4 3 8 8 N 1.31405 * 119.99869 * 21.28490 * 7 5 4 9 9 Si 1.86803 * 119.99710 * 201.28879 * 7 5 4 10 10 H 1.48489 * 109.47361 * 84.81820 * 9 7 5 11 11 H 1.48502 * 109.46653 * 204.81832 * 9 7 5 12 12 H 1.48501 * 109.46971 * 324.81121 * 9 7 5 13 13 C 1.34777 * 120.00188 * 84.59928 * 4 3 2 14 14 O 1.21296 * 120.00078 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00270 * 0.02562 * 13 4 3 16 16 H 1.09008 * 115.54852 * 34.32515 * 15 13 4 17 17 C 1.52998 * 117.49804 * 248.62513 * 15 13 4 18 18 C 1.52996 * 117.50467 * 179.97438 * 15 13 4 19 19 H 1.08997 * 117.49474 * 359.97438 * 18 15 13 20 20 C 1.50700 * 117.50271 * 214.97896 * 18 15 13 21 21 C 1.38219 * 119.95869 * 119.99479 * 20 18 15 22 22 C 1.38430 * 120.04890 * 179.97438 * 21 20 18 23 23 F 1.35092 * 120.02525 * 180.02562 * 22 21 20 24 24 C 1.38603 * 119.94998 * 0.02562 * 22 21 20 25 25 F 1.35096 * 120.04129 * 179.97438 * 24 22 21 26 26 C 1.38594 * 119.91442 * 0.24685 * 24 22 21 27 27 F 1.35095 * 120.02650 * 179.74757 * 26 24 22 28 28 C 1.38231 * 119.95252 * 299.97825 * 20 18 15 29 29 H 1.08993 * 109.47281 * 285.42701 * 3 2 1 30 30 H 1.09005 * 109.46923 * 165.42911 * 3 2 1 31 31 H 0.96998 * 119.99654 * 179.97438 * 8 7 5 32 32 H 1.09003 * 117.50015 * 145.01338 * 17 15 13 33 33 H 1.08995 * 117.49913 * 359.97438 * 17 15 13 34 34 H 1.08008 * 119.97709 * 0.02562 * 21 20 18 35 35 H 1.08002 * 119.97766 * 0.04259 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9683 -0.9840 5 6 3.4312 -2.2377 -0.5885 6 1 4.0131 -2.8712 -1.2415 7 6 3.0216 -2.7092 0.6528 8 7 2.0010 -2.1506 1.2637 9 14 3.9219 -4.1369 1.4532 10 1 5.1038 -3.6251 2.1921 11 1 3.0096 -4.8302 2.3978 12 1 4.3677 -5.0905 0.4057 13 6 3.2178 -0.6120 -2.2781 14 8 3.6229 -1.4141 -3.0928 15 6 2.8507 0.7835 -2.7130 16 1 3.0584 1.5714 -1.9889 17 6 1.6132 0.9451 -3.5981 18 6 3.0106 1.1267 -4.1954 19 1 3.3817 0.3432 -4.8561 20 6 3.4422 2.5282 -4.5426 21 6 4.6143 2.7353 -5.2452 22 6 5.0123 4.0219 -5.5656 23 9 6.1577 4.2238 -6.2528 24 6 4.2346 5.1028 -5.1808 25 9 4.6215 6.3592 -5.4921 26 6 3.0625 4.8933 -4.4715 27 9 2.3055 5.9455 -4.0909 28 6 2.6651 3.6048 -4.1583 29 1 2.9715 -0.2725 0.9906 30 1 2.9709 0.9955 -0.2586 31 1 1.7148 -2.4800 2.1300 32 1 1.0064 1.8394 -3.4564 33 1 1.0649 0.0421 -3.8662 34 1 5.2198 1.8928 -5.5452 35 1 1.7498 3.4409 -3.6089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185670076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:10 Heat of formation + Delta-G solvation = -86.755086 kcal Electronic energy + Delta-G solvation = -26240.449414 eV Core-core repulsion = 21790.360260 eV Total energy + Delta-G solvation = -4450.089154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.82753 -50.23884 -49.52281 -41.23850 -40.04877 -37.82008 -36.97609 -36.03487 -33.69457 -31.73146 -31.36782 -29.20997 -27.33811 -25.35608 -24.70163 -24.07010 -22.01173 -20.49721 -19.71706 -19.40519 -18.94372 -18.50041 -18.11347 -17.92611 -17.82176 -17.04590 -16.63277 -16.52859 -16.30820 -16.01279 -15.97037 -15.61007 -15.44217 -15.30712 -14.91274 -14.66450 -14.10266 -13.86456 -13.60557 -13.43524 -13.40515 -13.28726 -12.97898 -12.91249 -12.79463 -12.47201 -12.27951 -12.16568 -12.07723 -11.54762 -11.43704 -11.08122 -10.42668 -10.02605 -9.92908 -9.73568 -8.39590 -5.93374 -0.44363 -0.30153 1.39840 1.50437 1.59048 1.76096 1.90306 2.10596 2.26623 2.31720 2.38589 2.87954 2.94475 3.04998 3.08989 3.18808 3.35266 3.37668 3.63340 3.80216 3.94074 3.98540 4.00961 4.18471 4.37450 4.48605 4.63120 4.68590 4.75263 4.89048 4.94439 5.00458 5.08316 5.31287 5.50338 5.51700 6.04407 6.41418 7.06860 7.13832 7.38384 7.94856 8.63424 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.003099 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.499907 B = 9032.325509 C = 9793.944895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.260 3.740 3 C 0.220 3.780 4 N -0.449 5.449 5 C -0.341 4.341 6 H 0.083 0.917 7 C 0.008 3.992 8 N -0.891 5.891 9 Si 0.983 3.017 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.279 1.279 13 C 0.474 3.526 14 O -0.616 6.616 15 C -0.167 4.167 16 H 0.152 0.848 17 C -0.136 4.136 18 C -0.081 4.081 19 H 0.123 0.877 20 C 0.011 3.989 21 C -0.116 4.116 22 C 0.098 3.902 23 F -0.126 7.126 24 C 0.014 3.986 25 F -0.130 7.130 26 C 0.101 3.899 27 F -0.124 7.124 28 C -0.123 4.123 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.275 0.725 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.169 0.831 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.138 13.925 -7.459 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.058 4.058 3 C 0.093 3.907 4 N -0.168 5.168 5 C -0.468 4.468 6 H 0.101 0.899 7 C -0.194 4.194 8 N -0.529 5.529 9 Si 0.808 3.192 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.204 1.204 13 C 0.265 3.735 14 O -0.502 6.502 15 C -0.188 4.188 16 H 0.169 0.831 17 C -0.173 4.173 18 C -0.100 4.100 19 H 0.141 0.859 20 C 0.011 3.989 21 C -0.135 4.135 22 C 0.078 3.922 23 F -0.104 7.104 24 C -0.007 4.007 25 F -0.109 7.109 26 C 0.081 3.919 27 F -0.103 7.103 28 C -0.141 4.141 29 H 0.142 0.858 30 H 0.155 0.845 31 H 0.085 0.915 32 H 0.154 0.846 33 H 0.104 0.896 34 H 0.187 0.813 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.603 13.589 -7.673 15.821 hybrid contribution 0.809 -0.630 0.438 1.115 sum 3.412 12.959 -7.235 15.229 Atomic orbital electron populations 1.80905 1.14623 1.12128 1.10973 1.29679 0.95688 0.89689 0.90698 1.19120 0.80336 0.94138 0.97097 1.43711 1.56181 1.11209 1.05673 1.19635 1.33038 0.92075 1.02083 0.89870 1.25814 0.95274 1.01024 0.97328 1.69947 1.22017 1.44016 1.16942 0.85080 0.78390 0.77923 0.77776 1.18523 1.21202 1.20413 1.19994 0.82395 0.89513 0.81601 1.90518 1.52170 1.55168 1.52363 1.22401 1.05762 0.95757 0.94895 0.83095 1.23205 0.89704 1.04470 0.99936 1.20881 1.00495 0.93627 0.95000 0.85905 1.18677 0.92595 0.93019 0.94640 1.21140 0.97643 0.95214 0.99456 1.17297 0.84381 0.92738 0.97827 1.91550 1.46381 1.95737 1.76748 1.17756 0.96917 0.79797 1.06276 1.91518 1.90801 1.37128 1.91442 1.17264 0.89522 0.85286 0.99853 1.91559 1.74165 1.55472 1.89055 1.21241 1.02725 0.88253 1.01905 0.85814 0.84467 0.91523 0.84611 0.89561 0.81318 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.97 18.54 20.01 0.37 -21.60 16 2 C 0.26 10.31 13.59 89.44 1.22 11.53 16 3 C 0.22 7.67 4.91 84.58 0.42 8.08 16 4 N -0.45 -19.26 2.60 -645.42 -1.68 -20.94 16 5 C -0.34 -16.86 9.37 84.04 0.79 -16.07 16 6 H 0.08 4.48 7.35 -2.91 -0.02 4.46 16 7 C 0.01 0.37 4.90 84.93 0.42 0.79 16 8 N -0.89 -42.29 9.37 21.66 0.20 -42.09 16 9 Si 0.98 38.55 29.60 68.60 2.03 40.58 16 10 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 11 H -0.29 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 13 C 0.47 19.25 7.35 87.66 0.64 19.90 16 14 O -0.62 -30.05 15.89 -3.08 -0.05 -30.10 16 15 C -0.17 -4.54 4.82 -11.54 -0.06 -4.60 16 16 H 0.15 3.08 6.52 -2.38 -0.02 3.06 16 17 C -0.14 -3.18 9.56 30.61 0.29 -2.89 16 18 C -0.08 -1.84 5.55 -11.52 -0.06 -1.90 16 19 H 0.12 3.19 7.67 -2.39 -0.02 3.17 16 20 C 0.01 0.20 5.61 -19.87 -0.11 0.09 16 21 C -0.12 -2.04 9.71 22.31 0.22 -1.82 16 22 C 0.10 1.93 7.31 22.40 0.16 2.09 16 23 F -0.13 -2.71 17.18 44.97 0.77 -1.94 16 24 C 0.01 0.28 7.31 22.44 0.16 0.45 16 25 F -0.13 -3.07 17.10 44.97 0.77 -2.30 16 26 C 0.10 1.90 7.31 22.40 0.16 2.06 16 27 F -0.12 -2.54 17.18 44.97 0.77 -1.76 16 28 C -0.12 -1.96 9.27 22.31 0.21 -1.76 16 29 H 0.12 4.57 6.29 -2.39 -0.02 4.55 16 30 H 0.14 3.23 6.24 -2.38 -0.01 3.21 16 31 H 0.27 12.66 8.31 -92.71 -0.77 11.89 16 32 H 0.14 2.26 6.17 -2.39 -0.01 2.25 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.18 2.13 6.01 -2.91 -0.02 2.11 16 Total: -1.00 -63.36 326.13 8.84 -54.52 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.19 Total: 9.68 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 4.46 Total: 15.96 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -1.10 Total: -84.63 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.05 Total: -30.10 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 2.31 Total: -6.01 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -63.36 8.84 -54.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185670076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.232 kcal (2) G-P(sol) polarization free energy of solvation -63.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds