Wall clock time and date at job start Tue Mar 31 2020 14:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47550 * 247.37088 * 3 2 1 5 5 C 1.37100 * 119.99755 * 264.13927 * 4 3 2 6 6 H 1.07999 * 119.99903 * 197.71474 * 5 4 3 7 7 C 1.38949 * 120.00001 * 17.72645 * 5 4 3 8 8 N 1.31409 * 120.00275 * 21.09291 * 7 5 4 9 9 Si 1.86802 * 119.99798 * 201.09634 * 7 5 4 10 10 H 1.48500 * 109.47250 * 59.99631 * 9 7 5 11 11 H 1.48494 * 109.47127 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47307 * 299.99515 * 9 7 5 13 13 C 1.34774 * 119.99998 * 84.13693 * 4 3 2 14 14 O 1.21295 * 119.99769 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00292 * 0.02562 * 13 4 3 16 16 H 1.09002 * 115.55872 * 34.30563 * 15 13 4 17 17 C 1.53078 * 117.51398 * 248.60910 * 15 13 4 18 18 C 1.52999 * 117.50204 * 179.97438 * 15 13 4 19 19 H 1.08996 * 117.50138 * 215.00004 * 18 15 13 20 20 C 1.50700 * 117.49546 * 0.02562 * 18 15 13 21 21 C 1.38226 * 119.96005 * 60.18836 * 20 18 15 22 22 C 1.38421 * 120.04398 * 180.31894 * 21 20 18 23 23 F 1.35107 * 120.02177 * 179.69568 * 22 21 20 24 24 C 1.38601 * 119.95606 * 359.42858 * 22 21 20 25 25 F 1.35106 * 120.04247 * 180.25291 * 24 22 21 26 26 C 1.38592 * 119.90887 * 0.27013 * 24 22 21 27 27 F 1.35099 * 120.01916 * 180.02562 * 26 24 22 28 28 C 1.38233 * 119.95050 * 239.90751 * 20 18 15 29 29 H 1.09000 * 109.46982 * 127.36663 * 3 2 1 30 30 H 1.09000 * 109.47336 * 7.37632 * 3 2 1 31 31 H 0.97002 * 119.99943 * 180.02562 * 8 7 5 32 32 H 1.08991 * 117.49787 * 145.03357 * 17 15 13 33 33 H 1.08998 * 117.50958 * 359.97438 * 17 15 13 34 34 H 1.08007 * 119.97612 * 0.02562 * 21 20 18 35 35 H 1.07996 * 119.97618 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.5323 1.2748 5 6 3.4384 1.8557 1.3795 6 1 4.0546 2.1908 2.2008 7 6 2.9923 2.7660 0.4292 8 7 1.9426 2.4837 -0.3093 9 14 3.8849 4.3911 0.2012 10 1 5.2951 4.1314 -0.1849 11 1 3.2166 5.1773 -0.8667 12 1 3.8529 5.1562 1.4735 13 6 3.2088 -0.2796 2.3446 14 8 3.6134 0.1605 3.4000 15 6 2.8331 -1.7344 2.2294 16 1 3.0405 -2.1988 1.2653 17 6 1.5900 -2.2060 2.9881 18 6 2.9839 -2.6042 3.4791 19 1 3.2904 -3.6405 3.3371 20 6 3.4961 -1.9402 4.7312 21 6 2.7952 -0.8887 5.2912 22 6 3.2676 -0.2733 6.4376 23 9 2.5854 0.7585 6.9810 24 6 4.4381 -0.7198 7.0306 25 9 4.8980 -0.1237 8.1524 26 6 5.1361 -1.7783 6.4711 27 9 6.2769 -2.2157 7.0476 28 6 4.6634 -2.3875 5.3214 29 1 2.9710 0.6245 -0.8168 30 1 2.9718 -1.0183 -0.1319 31 1 1.6315 3.1190 -0.9729 32 1 0.9802 -2.9803 2.5229 33 1 1.0442 -1.4640 3.5709 34 1 1.8808 -0.5440 4.8313 35 1 5.2069 -3.2124 4.8851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185670095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:13 Heat of formation + Delta-G solvation = -62.558172 kcal Electronic energy + Delta-G solvation = -27291.312204 eV Core-core repulsion = 22842.272307 eV Total energy + Delta-G solvation = -4449.039897 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.45234 -48.85989 -48.13648 -40.11330 -38.31253 -36.31099 -35.48576 -34.33807 -31.97252 -30.38483 -29.98672 -27.62752 -25.72985 -24.08376 -23.24173 -22.84195 -20.87460 -19.08360 -18.12343 -17.91266 -17.62268 -17.10410 -16.67204 -16.48230 -16.35354 -15.61416 -15.19240 -15.12508 -14.71208 -14.62310 -14.53586 -14.20554 -14.07425 -13.85824 -13.44737 -13.09755 -12.78227 -12.56001 -12.29593 -12.06169 -11.80454 -11.70465 -11.54660 -11.39553 -11.25482 -11.20575 -10.70530 -10.53105 -10.50128 -10.29403 -10.21253 -9.35790 -9.02634 -8.56301 -8.14583 -7.92834 -6.61850 -4.10666 0.97162 1.12852 2.96139 3.16324 3.16425 3.19249 3.48783 3.60204 3.71536 3.90456 4.02306 4.12917 4.39313 4.47444 4.51181 4.64433 4.70960 4.79190 4.96674 5.01232 5.13856 5.24152 5.31654 5.46396 5.65329 5.70769 5.86839 5.95044 6.02443 6.05241 6.08132 6.18344 6.41525 6.50232 6.90568 7.36524 7.77712 8.15867 8.66656 8.88316 9.07605 9.60994 10.43465 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.004505 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.393934 B = 6214.123782 C = 7200.121322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.247 3.753 3 C 0.220 3.780 4 N -0.431 5.431 5 C -0.314 4.314 6 H 0.110 0.890 7 C 0.035 3.965 8 N -0.874 5.874 9 Si 0.927 3.073 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.472 3.528 14 O -0.560 6.560 15 C -0.161 4.161 16 H 0.123 0.877 17 C -0.148 4.148 18 C -0.097 4.097 19 H 0.125 0.875 20 C 0.015 3.985 21 C -0.054 4.054 22 C 0.090 3.910 23 F -0.126 7.126 24 C 0.025 3.975 25 F -0.128 7.128 26 C 0.082 3.918 27 F -0.130 7.130 28 C -0.131 4.131 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.275 0.725 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -11.522 3.932 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.071 4.071 3 C 0.092 3.908 4 N -0.149 5.149 5 C -0.441 4.441 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.512 5.512 9 Si 0.753 3.247 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.261 3.739 14 O -0.444 6.444 15 C -0.183 4.183 16 H 0.141 0.859 17 C -0.186 4.186 18 C -0.116 4.116 19 H 0.143 0.857 20 C 0.014 3.986 21 C -0.073 4.073 22 C 0.069 3.931 23 F -0.104 7.104 24 C 0.003 3.997 25 F -0.106 7.106 26 C 0.061 3.939 27 F -0.108 7.108 28 C -0.150 4.150 29 H 0.145 0.855 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.162 0.838 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.112 -11.107 4.366 12.120 hybrid contribution 0.914 1.397 -0.085 1.671 sum 3.026 -9.710 4.281 11.035 Atomic orbital electron populations 1.80903 1.13546 1.12109 1.08526 1.29220 0.95273 0.90079 0.92572 1.18755 0.81763 0.99175 0.91070 1.43605 1.55431 1.09208 1.06661 1.19694 1.30109 0.81746 1.12566 0.87279 1.25286 0.94891 0.99848 0.96949 1.69845 1.19822 1.37964 1.23587 0.85967 0.79511 0.80850 0.78351 1.19613 1.20919 1.19734 1.19183 0.84573 0.86124 0.84037 1.90585 1.50607 1.76352 1.26852 1.22478 1.03762 0.95452 0.96578 0.85942 1.23121 0.89889 1.03157 1.02427 1.20980 1.00503 0.98618 0.91468 0.85711 1.18454 0.92766 0.93868 0.93516 1.20790 1.01381 0.93962 0.91202 1.17156 0.91411 0.89276 0.95224 1.91524 1.78301 1.55562 1.85062 1.17474 0.96266 0.97603 0.88308 1.91497 1.88349 1.82575 1.48197 1.17082 0.85269 0.96227 0.95274 1.91502 1.46921 1.88519 1.83878 1.20677 0.97410 1.02326 0.94612 0.85538 0.89782 0.91421 0.87497 0.88048 0.83804 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.39 18.54 42.16 0.78 -9.61 16 2 C 0.25 5.00 13.47 -20.76 -0.28 4.72 16 3 C 0.22 3.95 4.91 -6.83 -0.03 3.91 16 4 N -0.43 -9.11 2.60 -117.94 -0.31 -9.42 16 5 C -0.31 -7.59 9.32 -14.93 -0.14 -7.73 16 6 H 0.11 2.82 7.39 -52.49 -0.39 2.43 16 7 C 0.03 0.81 4.87 -17.47 -0.09 0.73 16 8 N -0.87 -20.96 9.47 55.50 0.53 -20.44 16 9 Si 0.93 19.04 29.60 -169.99 -5.03 14.01 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.47 9.29 7.21 -10.99 -0.08 9.21 16 14 O -0.56 -12.50 11.37 5.54 0.06 -12.44 16 15 C -0.16 -2.30 5.17 -91.73 -0.47 -2.77 16 16 H 0.12 1.40 6.53 -51.93 -0.34 1.06 16 17 C -0.15 -1.87 9.58 -26.66 -0.26 -2.13 16 18 C -0.10 -1.17 6.04 -91.75 -0.55 -1.72 16 19 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 20 C 0.01 0.21 4.35 -104.63 -0.46 -0.25 16 21 C -0.05 -0.89 6.16 -39.52 -0.24 -1.14 16 22 C 0.09 1.56 7.31 -39.38 -0.29 1.27 16 23 F -0.13 -2.31 17.18 2.25 0.04 -2.27 16 24 C 0.02 0.41 7.31 -39.32 -0.29 0.13 16 25 F -0.13 -2.21 17.10 2.25 0.04 -2.17 16 26 C 0.08 1.24 7.31 -39.38 -0.29 0.95 16 27 F -0.13 -1.93 17.18 2.25 0.04 -1.90 16 28 C -0.13 -1.75 9.71 -39.51 -0.38 -2.14 16 29 H 0.13 2.37 6.45 -51.93 -0.33 2.04 16 30 H 0.08 1.10 6.26 -51.93 -0.33 0.78 16 31 H 0.28 6.46 8.31 -40.82 -0.34 6.13 16 32 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.10 1.44 6.17 -51.93 -0.32 1.12 16 34 H 0.14 2.43 5.79 -52.48 -0.30 2.13 16 35 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -28.84 318.31 -5.32 -34.16 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.41 Total: 2.22 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -3.85 Total: 3.06 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 1.00 Total: -39.47 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.06 Total: -12.44 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.12 Total: -6.34 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.84 -5.32 -34.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185670095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.401 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds