Wall clock time and date at job start Tue Mar 31 2020 14:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47550 * 247.37088 * 3 2 1 5 5 C 1.37100 * 119.99755 * 264.13927 * 4 3 2 6 6 H 1.07999 * 119.99903 * 197.71474 * 5 4 3 7 7 C 1.38949 * 120.00001 * 17.72645 * 5 4 3 8 8 N 1.31409 * 120.00275 * 21.09291 * 7 5 4 9 9 Si 1.86802 * 119.99798 * 201.09634 * 7 5 4 10 10 H 1.48500 * 109.47250 * 59.99631 * 9 7 5 11 11 H 1.48494 * 109.47127 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47307 * 299.99515 * 9 7 5 13 13 C 1.34774 * 119.99998 * 84.13693 * 4 3 2 14 14 O 1.21295 * 119.99769 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00292 * 0.02562 * 13 4 3 16 16 H 1.09002 * 115.55872 * 34.30563 * 15 13 4 17 17 C 1.53078 * 117.51398 * 248.60910 * 15 13 4 18 18 C 1.52999 * 117.50204 * 179.97438 * 15 13 4 19 19 H 1.08996 * 117.50138 * 215.00004 * 18 15 13 20 20 C 1.50700 * 117.49546 * 0.02562 * 18 15 13 21 21 C 1.38226 * 119.96005 * 60.18836 * 20 18 15 22 22 C 1.38421 * 120.04398 * 180.31894 * 21 20 18 23 23 F 1.35107 * 120.02177 * 179.69568 * 22 21 20 24 24 C 1.38601 * 119.95606 * 359.42858 * 22 21 20 25 25 F 1.35106 * 120.04247 * 180.25291 * 24 22 21 26 26 C 1.38592 * 119.90887 * 0.27013 * 24 22 21 27 27 F 1.35099 * 120.01916 * 180.02562 * 26 24 22 28 28 C 1.38233 * 119.95050 * 239.90751 * 20 18 15 29 29 H 1.09000 * 109.46982 * 127.36663 * 3 2 1 30 30 H 1.09000 * 109.47336 * 7.37632 * 3 2 1 31 31 H 0.97002 * 119.99943 * 180.02562 * 8 7 5 32 32 H 1.08991 * 117.49787 * 145.03357 * 17 15 13 33 33 H 1.08998 * 117.50958 * 359.97438 * 17 15 13 34 34 H 1.08007 * 119.97612 * 0.02562 * 21 20 18 35 35 H 1.07996 * 119.97618 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.5323 1.2748 5 6 3.4384 1.8557 1.3795 6 1 4.0546 2.1908 2.2008 7 6 2.9923 2.7660 0.4292 8 7 1.9426 2.4837 -0.3093 9 14 3.8849 4.3911 0.2012 10 1 5.2951 4.1314 -0.1849 11 1 3.2166 5.1773 -0.8667 12 1 3.8529 5.1562 1.4735 13 6 3.2088 -0.2796 2.3446 14 8 3.6134 0.1605 3.4000 15 6 2.8331 -1.7344 2.2294 16 1 3.0405 -2.1988 1.2653 17 6 1.5900 -2.2060 2.9881 18 6 2.9839 -2.6042 3.4791 19 1 3.2904 -3.6405 3.3371 20 6 3.4961 -1.9402 4.7312 21 6 2.7952 -0.8887 5.2912 22 6 3.2676 -0.2733 6.4376 23 9 2.5854 0.7585 6.9810 24 6 4.4381 -0.7198 7.0306 25 9 4.8980 -0.1237 8.1524 26 6 5.1361 -1.7783 6.4711 27 9 6.2769 -2.2157 7.0476 28 6 4.6634 -2.3875 5.3214 29 1 2.9710 0.6245 -0.8168 30 1 2.9718 -1.0183 -0.1319 31 1 1.6315 3.1190 -0.9729 32 1 0.9802 -2.9803 2.5229 33 1 1.0442 -1.4640 3.5709 34 1 1.8808 -0.5440 4.8313 35 1 5.2069 -3.2124 4.8851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185670095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:12 Heat of formation + Delta-G solvation = -77.313229 kcal Electronic energy + Delta-G solvation = -27291.952031 eV Core-core repulsion = 22842.272307 eV Total energy + Delta-G solvation = -4449.679724 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.75698 -50.15478 -49.45858 -41.39294 -39.69027 -37.69537 -36.89854 -35.97115 -33.69538 -31.59003 -31.20822 -29.18333 -27.27670 -25.26201 -24.56146 -24.10591 -21.99064 -20.46669 -19.68612 -19.30839 -18.89506 -18.39882 -18.00145 -17.90509 -17.72067 -16.94810 -16.60540 -16.45834 -16.13742 -15.97135 -15.86775 -15.52628 -15.39176 -15.28359 -14.91115 -14.62608 -14.09754 -13.86195 -13.74659 -13.41123 -13.29356 -13.14775 -12.94641 -12.85021 -12.72425 -12.38325 -12.29987 -12.18167 -12.06637 -11.45281 -11.29450 -11.04369 -10.44402 -9.92259 -9.72873 -9.26761 -8.39407 -5.92881 -0.26324 -0.08176 1.38229 1.46948 1.54004 1.77614 2.01105 2.23231 2.33370 2.39289 2.47253 2.93782 3.05983 3.15980 3.17568 3.31273 3.47707 3.49845 3.67170 3.93703 3.99701 4.04712 4.13590 4.29860 4.53555 4.63157 4.69936 4.85114 4.88124 4.90998 4.98375 5.05324 5.12507 5.41367 5.50045 5.69289 6.07547 6.43302 7.10680 7.16964 7.42474 8.00561 8.63191 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.004505 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.393934 B = 6214.123782 C = 7200.121322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.261 3.739 3 C 0.221 3.779 4 N -0.451 5.451 5 C -0.334 4.334 6 H 0.079 0.921 7 C 0.008 3.992 8 N -0.890 5.890 9 Si 0.976 3.024 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.289 1.289 13 C 0.469 3.531 14 O -0.594 6.594 15 C -0.174 4.174 16 H 0.163 0.837 17 C -0.146 4.146 18 C -0.076 4.076 19 H 0.179 0.821 20 C 0.011 3.989 21 C -0.064 4.064 22 C 0.063 3.937 23 F -0.142 7.142 24 C 0.005 3.995 25 F -0.137 7.137 26 C 0.081 3.919 27 F -0.127 7.127 28 C -0.111 4.111 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.273 0.727 32 H 0.141 0.859 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 -14.715 2.543 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.057 4.057 3 C 0.094 3.906 4 N -0.170 5.170 5 C -0.461 4.461 6 H 0.097 0.903 7 C -0.194 4.194 8 N -0.529 5.529 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.215 1.215 13 C 0.260 3.740 14 O -0.479 6.479 15 C -0.195 4.195 16 H 0.181 0.819 17 C -0.183 4.183 18 C -0.094 4.094 19 H 0.196 0.804 20 C 0.010 3.990 21 C -0.083 4.083 22 C 0.042 3.958 23 F -0.121 7.121 24 C -0.016 4.016 25 F -0.116 7.116 26 C 0.061 3.939 27 F -0.105 7.105 28 C -0.129 4.129 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.148 0.852 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.104 -14.316 2.973 14.947 hybrid contribution 0.623 2.368 0.466 2.492 sum 3.727 -11.948 3.438 12.980 Atomic orbital electron populations 1.80907 1.14799 1.13550 1.09776 1.29722 0.95748 0.88846 0.91368 1.19071 0.80172 1.02022 0.89294 1.43747 1.56382 1.08421 1.08424 1.19485 1.30519 0.83923 1.12198 0.90273 1.25732 0.95217 1.01763 0.96723 1.69920 1.20414 1.38548 1.24035 0.85247 0.79222 0.78084 0.77318 1.18592 1.20514 1.21479 1.20238 0.82356 0.88396 0.83024 1.90585 1.51333 1.77841 1.28129 1.22508 1.05585 0.91842 0.99577 0.81930 1.23228 0.90165 1.03196 1.01734 1.21289 0.99416 1.00122 0.88567 0.80379 1.18852 0.92748 0.92995 0.94397 1.20861 1.01432 0.94974 0.91034 1.17457 0.92230 0.89765 0.96316 1.91468 1.78737 1.56437 1.85431 1.17717 0.96668 0.98675 0.88538 1.91461 1.88433 1.82950 1.48728 1.17255 0.85160 0.95769 0.95754 1.91511 1.46712 1.88345 1.83977 1.21110 0.96532 1.02300 0.93007 0.86445 0.83927 0.91718 0.84059 0.90756 0.85224 0.79238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.06 18.54 20.00 0.37 -21.68 16 2 C 0.26 10.17 13.47 89.44 1.20 11.37 16 3 C 0.22 7.43 4.91 84.57 0.42 7.85 16 4 N -0.45 -18.69 2.60 -645.44 -1.68 -20.37 16 5 C -0.33 -16.40 9.32 84.04 0.78 -15.61 16 6 H 0.08 4.28 7.39 -2.91 -0.02 4.26 16 7 C 0.01 0.38 4.87 84.93 0.41 0.79 16 8 N -0.89 -42.84 9.47 21.66 0.21 -42.63 16 9 Si 0.98 39.61 29.60 68.60 2.03 41.64 16 10 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 11 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 12 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 13 C 0.47 17.81 7.21 87.66 0.63 18.44 16 14 O -0.59 -26.59 11.37 -3.08 -0.03 -26.63 16 15 C -0.17 -4.21 5.17 -11.52 -0.06 -4.27 16 16 H 0.16 2.63 6.53 -2.39 -0.02 2.61 16 17 C -0.15 -3.13 9.58 30.64 0.29 -2.83 16 18 C -0.08 -1.43 6.04 -11.52 -0.07 -1.50 16 19 H 0.18 1.60 8.14 -2.39 -0.02 1.58 16 20 C 0.01 0.28 4.35 -19.87 -0.09 0.19 16 21 C -0.06 -2.11 6.16 22.31 0.14 -1.97 16 22 C 0.06 2.26 7.31 22.40 0.16 2.43 16 23 F -0.14 -5.58 17.18 44.97 0.77 -4.80 16 24 C 0.00 0.17 7.31 22.44 0.16 0.33 16 25 F -0.14 -4.89 17.10 44.97 0.77 -4.12 16 26 C 0.08 2.32 7.31 22.40 0.16 2.48 16 27 F -0.13 -3.54 17.18 44.97 0.77 -2.76 16 28 C -0.11 -2.56 9.71 22.31 0.22 -2.34 16 29 H 0.12 4.23 6.45 -2.39 -0.02 4.21 16 30 H 0.14 3.05 6.26 -2.39 -0.01 3.03 16 31 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 32 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.04 6.17 -2.39 -0.01 2.02 16 34 H 0.13 4.58 5.79 -2.91 -0.02 4.56 16 35 H 0.19 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -67.12 318.31 8.77 -58.35 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.19 Total: 7.66 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 4.37 Total: 15.35 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -1.10 Total: -84.69 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.03 Total: -26.63 kcal Atomic # 9 Polarization: -14.01 SS G_CDS: 2.31 Total: -11.69 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -67.12 8.77 -58.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185670095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.960 kcal (2) G-P(sol) polarization free energy of solvation -67.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds