Wall clock time and date at job start Tue Mar 31 2020 14:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48496 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46955 * 300.00169 * 3 2 1 6 6 H 1.48501 * 109.47133 * 60.00021 * 3 2 1 7 7 C 1.37870 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00485 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47139 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47089 * 179.97438 * 11 10 9 13 13 S 1.65598 * 119.99659 * 164.99866 * 12 11 10 14 14 O 1.42091 * 104.27990 * 308.92698 * 13 12 11 15 15 O 1.42103 * 104.27476 * 181.06556 * 13 12 11 16 16 C 1.81405 * 104.44813 * 65.00028 * 13 12 11 17 17 C 1.50705 * 109.46736 * 179.97438 * 16 13 12 18 18 N 1.29740 * 126.29138 * 269.99331 * 17 16 13 19 19 O 1.41361 * 109.74059 * 180.02562 * 18 17 16 20 20 C 1.34820 * 109.32695 * 0.02562 * 19 18 17 21 21 C 1.38983 * 133.44621 * 179.97438 * 20 19 18 22 22 C 1.37794 * 119.79420 * 180.02562 * 21 20 19 23 23 C 1.38785 * 120.59884 * 0.02562 * 22 21 20 24 24 C 1.36622 * 120.51766 * 359.97438 * 23 22 21 25 25 C 1.39679 * 119.79071 * 0.02562 * 24 23 22 26 26 H 0.97006 * 120.00144 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47511 * 59.99582 * 9 7 2 28 28 H 1.09005 * 109.46760 * 299.99342 * 9 7 2 29 29 H 1.09005 * 109.47294 * 59.99496 * 10 9 7 30 30 H 1.09001 * 109.47063 * 299.99756 * 10 9 7 31 31 H 1.08995 * 109.47227 * 59.99761 * 11 10 9 32 32 H 1.09001 * 109.47224 * 300.00000 * 11 10 9 33 33 H 0.96998 * 120.00065 * 344.99411 * 12 11 10 34 34 H 1.09002 * 109.47263 * 60.00179 * 16 13 12 35 35 H 1.08996 * 109.46963 * 299.99311 * 16 13 12 36 36 H 1.08003 * 120.10178 * 359.97438 * 21 20 19 37 37 H 1.08005 * 119.70221 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.74182 * 179.72896 * 23 22 21 39 39 H 1.08005 * 120.10555 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 6 1.4802 -4.9870 -0.0033 12 7 2.4323 -6.1006 -0.0049 13 16 1.9176 -7.6304 0.3654 14 8 1.2158 -7.4769 1.5913 15 8 3.0940 -8.4239 0.2890 16 6 0.7724 -8.0594 -0.9744 17 6 0.2309 -9.4473 -0.7471 18 7 0.7489 -10.5545 -1.1821 19 8 -0.0440 -11.6484 -0.7662 20 6 -1.0903 -11.1935 -0.0479 21 6 -2.1575 -11.8178 0.5869 22 6 -3.0921 -11.0608 1.2593 23 6 -2.9785 -9.6785 1.3086 24 6 -1.9371 -9.0455 0.6911 25 6 -0.9788 -9.7944 0.0041 26 1 -0.4851 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8881 29 1 2.8719 -3.6051 0.8873 30 1 2.8718 -3.6035 -0.8927 31 1 0.8532 -5.0443 -0.8930 32 1 0.8538 -5.0454 0.8869 33 1 3.3640 -5.9418 -0.2229 34 1 1.3000 -8.0272 -1.9277 35 1 -0.0514 -7.3458 -0.9906 36 1 -2.2543 -12.8930 0.5526 37 1 -3.9210 -11.5475 1.7518 38 1 -3.7214 -9.0983 1.8358 39 1 -1.8555 -7.9694 0.7333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185764733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:02 Heat of formation + Delta-G solvation = -17.816711 kcal Electronic energy + Delta-G solvation = -24207.924796 eV Core-core repulsion = 20438.125726 eV Total energy + Delta-G solvation = -3769.799070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.21803 -38.15000 -37.32869 -36.23887 -36.04800 -35.26684 -33.33044 -31.09782 -30.96667 -30.53412 -29.64462 -26.49066 -23.73951 -23.14564 -23.09760 -21.42473 -20.60585 -19.38999 -18.04690 -17.85635 -17.63146 -16.82924 -16.55908 -16.10522 -16.04063 -15.89309 -14.92802 -14.72777 -14.56460 -14.49984 -14.30783 -14.00451 -13.45364 -12.72540 -12.71060 -12.63753 -12.43021 -12.35842 -12.31084 -12.23961 -12.09231 -11.85270 -11.64232 -11.55619 -11.00828 -10.90530 -10.84032 -10.57544 -10.01846 -9.55129 -9.42540 -9.37784 -9.16706 -9.02155 -8.43265 -6.08344 -4.10876 -0.24276 0.24888 0.85715 1.55785 1.95760 2.54672 3.17503 3.20790 3.26547 3.34636 3.38373 3.58988 3.63926 3.97894 4.16497 4.39842 4.43595 4.52686 4.59369 4.75636 4.88349 4.99627 5.15230 5.24511 5.28271 5.43093 5.50045 5.63884 5.75338 5.79970 5.95034 5.95111 6.17572 6.46484 6.65219 6.73656 6.85402 7.00878 7.55437 7.67170 7.90259 8.31940 8.95811 9.53989 11.02963 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.002556 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.039640 B =10953.203943 C =11877.928877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.116 4.116 11 C 0.105 3.895 12 N -1.109 6.109 13 S 2.617 3.383 14 O -0.935 6.935 15 O -0.946 6.946 16 C -0.575 4.575 17 C 0.133 3.867 18 N -0.264 5.264 19 O -0.081 6.081 20 C 0.085 3.915 21 C -0.127 4.127 22 C -0.056 4.056 23 C -0.146 4.146 24 C -0.030 4.030 25 C -0.197 4.197 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.420 0.580 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 -21.612 -0.301 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.156 4.156 11 C -0.020 4.020 12 N -0.871 5.871 13 S 2.704 3.296 14 O -0.925 6.925 15 O -0.936 6.936 16 C -0.699 4.699 17 C -0.048 4.048 18 N -0.007 5.007 19 O -0.094 6.094 20 C 0.031 3.969 21 C -0.147 4.147 22 C -0.075 4.075 23 C -0.164 4.164 24 C -0.050 4.050 25 C -0.201 4.201 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.256 0.744 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.375 -22.720 -0.239 23.348 hybrid contribution -0.115 1.608 -0.544 1.701 sum -5.489 -21.112 -0.783 21.828 Atomic orbital electron populations 1.69959 1.06051 1.26635 1.50735 1.25016 0.94868 0.99337 0.95216 0.86529 0.80110 0.83698 0.77614 1.19738 1.21018 1.20967 1.21243 0.93123 0.90890 1.50764 0.92528 1.19092 0.93929 0.91057 0.97631 1.21858 0.99681 0.92498 1.01513 1.21726 0.91480 0.87108 1.01664 1.55585 1.19687 1.23691 1.88138 1.05020 0.75192 0.73642 0.75785 1.93636 1.76061 1.85015 1.37748 1.93631 1.44132 1.69046 1.86780 1.29590 1.19294 0.96718 1.24305 1.23220 0.93131 0.93987 0.94482 1.79971 1.11403 0.93336 1.15978 1.89178 1.31932 1.27525 1.60755 1.20307 0.90539 0.92395 0.93671 1.20085 0.92731 1.00995 1.00892 1.21237 0.97217 0.93892 0.95156 1.20902 0.99153 0.94743 1.01579 1.20618 0.91198 1.00817 0.92393 1.20603 0.98531 0.93373 1.07565 0.92970 0.96285 0.96109 0.92205 0.92431 0.91953 0.90158 0.74417 0.81990 0.81817 0.84053 0.83928 0.84175 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.12 -2.08 5.29 -26.73 -0.14 -2.22 16 11 C 0.11 1.46 6.13 -4.04 -0.02 1.43 16 12 N -1.11 -13.23 5.89 -10.61 -0.06 -13.30 16 13 S 2.62 32.83 5.44 -107.50 -0.58 32.25 16 14 O -0.94 -14.23 17.50 -57.54 -1.01 -15.24 16 15 O -0.95 -14.60 18.08 -57.54 -1.04 -15.64 16 16 C -0.57 -5.49 6.67 36.01 0.24 -5.25 16 17 C 0.13 1.65 6.72 -80.12 -0.54 1.11 16 18 N -0.26 -3.73 12.81 34.91 0.45 -3.28 16 19 O -0.08 -1.10 12.06 7.68 0.09 -1.01 16 20 C 0.08 0.98 7.48 -38.47 -0.29 0.69 16 21 C -0.13 -1.04 10.07 -39.47 -0.40 -1.44 16 22 C -0.06 -0.36 10.02 -39.54 -0.40 -0.76 16 23 C -0.15 -1.08 9.97 -39.96 -0.40 -1.48 16 24 C -0.03 -0.29 10.05 -39.63 -0.40 -0.69 16 25 C -0.20 -2.30 6.32 -105.17 -0.67 -2.97 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.13 7.70 -51.93 -0.40 0.73 16 33 H 0.42 4.50 8.62 -34.47 -0.30 4.20 16 34 H 0.16 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.16 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.14 0.46 8.06 -52.48 -0.42 0.03 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -35.57 355.79 -9.52 -45.09 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.89 Total: -1.11 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -3.56 Total: -24.04 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 1.12 Total: -41.58 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -1.95 Total: -31.88 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 32.83 SS G_CDS: -0.58 Total: 32.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.57 -9.52 -45.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185764733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.277 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds