Wall clock time and date at job start Tue Mar 31 2020 14:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48496 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46955 * 300.00169 * 3 2 1 6 6 H 1.48501 * 109.47133 * 60.00021 * 3 2 1 7 7 C 1.37870 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00485 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47139 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47089 * 179.97438 * 11 10 9 13 13 S 1.65598 * 119.99659 * 164.99866 * 12 11 10 14 14 O 1.42091 * 104.27990 * 308.92698 * 13 12 11 15 15 O 1.42103 * 104.27476 * 181.06556 * 13 12 11 16 16 C 1.81405 * 104.44813 * 65.00028 * 13 12 11 17 17 C 1.50705 * 109.46736 * 179.97438 * 16 13 12 18 18 N 1.29740 * 126.29138 * 269.99331 * 17 16 13 19 19 O 1.41361 * 109.74059 * 180.02562 * 18 17 16 20 20 C 1.34820 * 109.32695 * 0.02562 * 19 18 17 21 21 C 1.38983 * 133.44621 * 179.97438 * 20 19 18 22 22 C 1.37794 * 119.79420 * 180.02562 * 21 20 19 23 23 C 1.38785 * 120.59884 * 0.02562 * 22 21 20 24 24 C 1.36622 * 120.51766 * 359.97438 * 23 22 21 25 25 C 1.39679 * 119.79071 * 0.02562 * 24 23 22 26 26 H 0.97006 * 120.00144 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47511 * 59.99582 * 9 7 2 28 28 H 1.09005 * 109.46760 * 299.99342 * 9 7 2 29 29 H 1.09005 * 109.47294 * 59.99496 * 10 9 7 30 30 H 1.09001 * 109.47063 * 299.99756 * 10 9 7 31 31 H 1.08995 * 109.47227 * 59.99761 * 11 10 9 32 32 H 1.09001 * 109.47224 * 300.00000 * 11 10 9 33 33 H 0.96998 * 120.00065 * 344.99411 * 12 11 10 34 34 H 1.09002 * 109.47263 * 60.00179 * 16 13 12 35 35 H 1.08996 * 109.46963 * 299.99311 * 16 13 12 36 36 H 1.08003 * 120.10178 * 359.97438 * 21 20 19 37 37 H 1.08005 * 119.70221 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.74182 * 179.72896 * 23 22 21 39 39 H 1.08005 * 120.10555 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 6 1.4802 -4.9870 -0.0033 12 7 2.4323 -6.1006 -0.0049 13 16 1.9176 -7.6304 0.3654 14 8 1.2158 -7.4769 1.5913 15 8 3.0940 -8.4239 0.2890 16 6 0.7724 -8.0594 -0.9744 17 6 0.2309 -9.4473 -0.7471 18 7 0.7489 -10.5545 -1.1821 19 8 -0.0440 -11.6484 -0.7662 20 6 -1.0903 -11.1935 -0.0479 21 6 -2.1575 -11.8178 0.5869 22 6 -3.0921 -11.0608 1.2593 23 6 -2.9785 -9.6785 1.3086 24 6 -1.9371 -9.0455 0.6911 25 6 -0.9788 -9.7944 0.0041 26 1 -0.4851 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8881 29 1 2.8719 -3.6051 0.8873 30 1 2.8718 -3.6035 -0.8927 31 1 0.8532 -5.0443 -0.8930 32 1 0.8538 -5.0454 0.8869 33 1 3.3640 -5.9418 -0.2229 34 1 1.3000 -8.0272 -1.9277 35 1 -0.0514 -7.3458 -0.9906 36 1 -2.2543 -12.8930 0.5526 37 1 -3.9210 -11.5475 1.7518 38 1 -3.7214 -9.0983 1.8358 39 1 -1.8555 -7.9694 0.7333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185764733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:01 Heat of formation + Delta-G solvation = -43.671353 kcal Electronic energy + Delta-G solvation = -24209.045937 eV Core-core repulsion = 20438.125726 eV Total energy + Delta-G solvation = -3770.920211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.01670 -38.81785 -38.43712 -37.43849 -37.20981 -36.11353 -35.16109 -32.63633 -31.73714 -31.26020 -30.47101 -28.18455 -24.76034 -24.41855 -23.84183 -22.42090 -21.98731 -20.42034 -18.86673 -18.74696 -18.57354 -18.41333 -17.64725 -17.26756 -17.01310 -16.53795 -16.47149 -16.06890 -15.80549 -15.32391 -15.06165 -14.79092 -14.32268 -14.21135 -14.04965 -13.72801 -13.43000 -13.37569 -13.32048 -13.27937 -13.22356 -13.21450 -12.80385 -12.65652 -12.51029 -12.27851 -12.15868 -11.86502 -11.62860 -11.35644 -11.10919 -10.51123 -10.43755 -10.10357 -9.71703 -8.16758 -6.25665 -1.22149 -0.50070 0.17898 0.77542 1.12337 1.42109 1.43998 1.55051 1.57463 2.35404 2.44217 2.54126 2.72071 2.83024 3.09659 3.17731 3.42002 3.68307 3.83478 4.00475 4.02734 4.19081 4.24628 4.31990 4.37746 4.49523 4.60270 4.73816 4.84476 4.98907 5.03588 5.22265 5.23404 5.27233 5.35641 5.56575 5.58939 5.81669 5.91554 5.95343 6.01358 6.30252 6.91818 7.43260 8.94812 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.002556 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.039640 B =10953.203943 C =11877.928877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.110 3.890 12 N -1.102 6.102 13 S 2.629 3.371 14 O -0.967 6.967 15 O -0.980 6.980 16 C -0.561 4.561 17 C 0.127 3.873 18 N -0.300 5.300 19 O -0.102 6.102 20 C 0.055 3.945 21 C -0.132 4.132 22 C -0.042 4.042 23 C -0.142 4.142 24 C -0.049 4.049 25 C -0.221 4.221 26 H 0.263 0.737 27 H 0.007 0.993 28 H -0.002 1.002 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.427 0.573 34 H 0.189 0.811 35 H 0.198 0.802 36 H 0.164 0.836 37 H 0.184 0.816 38 H 0.170 0.830 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 -21.675 -0.295 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.015 4.015 12 N -0.865 5.865 13 S 2.720 3.280 14 O -0.957 6.957 15 O -0.970 6.970 16 C -0.689 4.689 17 C -0.054 4.054 18 N -0.044 5.044 19 O -0.114 6.114 20 C 0.002 3.998 21 C -0.152 4.152 22 C -0.061 4.061 23 C -0.160 4.160 24 C -0.069 4.069 25 C -0.225 4.225 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.264 0.736 34 H 0.206 0.794 35 H 0.215 0.785 36 H 0.181 0.819 37 H 0.201 0.799 38 H 0.187 0.813 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.424 -22.779 -0.203 23.668 hybrid contribution 0.092 1.575 -0.502 1.656 sum -6.331 -21.203 -0.706 22.140 Atomic orbital electron populations 1.70068 1.07507 1.27569 1.51896 1.25871 0.95728 1.02992 0.95036 0.85507 0.79128 0.79420 0.77627 1.18861 1.20500 1.20728 1.21742 0.93579 0.92524 1.50063 0.92333 1.19007 0.94494 0.92348 0.95860 1.21632 0.98647 0.92573 1.01805 1.21585 0.91344 0.85480 1.03132 1.55311 1.19951 1.22938 1.88311 1.04365 0.74742 0.73075 0.75842 1.93593 1.76402 1.85285 1.40385 1.93589 1.46248 1.69662 1.87466 1.29524 1.19601 0.96211 1.23516 1.23616 0.93391 0.94388 0.93981 1.79881 1.12644 0.94067 1.17795 1.89098 1.32876 1.27777 1.61667 1.20867 0.91175 0.93010 0.94726 1.20565 0.91889 1.02473 1.00254 1.21769 0.97257 0.93624 0.93474 1.21376 0.98706 0.95558 1.00375 1.20949 0.91541 1.01605 0.92795 1.20845 0.99135 0.93856 1.08711 0.92847 0.97483 0.98356 0.92786 0.91323 0.88919 0.90524 0.73640 0.79386 0.78485 0.81855 0.79865 0.81290 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.86 13.29 21.44 0.28 -53.58 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 42.72 29.54 68.60 2.03 44.74 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -28.95 9.11 25.60 0.23 -28.72 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.02 0.99 4.97 29.85 0.15 1.13 16 10 C -0.11 -3.73 5.29 30.59 0.16 -3.57 16 11 C 0.11 2.86 6.13 86.38 0.53 3.39 16 12 N -1.10 -24.77 5.89 -187.48 -1.10 -25.87 16 13 S 2.63 64.27 5.44 -56.49 -0.31 63.96 16 14 O -0.97 -29.21 17.50 -127.65 -2.23 -31.45 16 15 O -0.98 -30.43 18.08 -127.65 -2.31 -32.74 16 16 C -0.56 -9.84 6.67 71.24 0.48 -9.36 16 17 C 0.13 3.12 6.72 45.04 0.30 3.42 16 18 N -0.30 -8.68 12.81 -43.47 -0.56 -9.24 16 19 O -0.10 -2.86 12.06 29.86 0.36 -2.50 16 20 C 0.06 1.28 7.48 22.99 0.17 1.45 16 21 C -0.13 -1.94 10.07 22.34 0.23 -1.72 16 22 C -0.04 -0.41 10.02 22.30 0.22 -0.19 16 23 C -0.14 -1.69 9.97 22.02 0.22 -1.47 16 24 C -0.05 -0.86 10.05 22.24 0.22 -0.64 16 25 C -0.22 -5.09 6.32 -20.22 -0.13 -5.21 16 26 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 29 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.08 2.08 7.70 -2.39 -0.02 2.06 16 33 H 0.43 8.58 8.62 -96.75 -0.83 7.75 16 34 H 0.19 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.20 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 38 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -79.29 355.79 -0.34 -79.63 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.25 Total: 7.97 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 3.25 Total: -40.94 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -1.38 Total: -88.69 kcal Atomic # 8 Polarization: -62.51 SS G_CDS: -4.18 Total: -66.69 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 64.27 SS G_CDS: -0.31 Total: 63.96 kcal Total: -79.29 -0.34 -79.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185764733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.962 kcal (2) G-P(sol) polarization free energy of solvation -79.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds