Wall clock time and date at job start Tue Mar 31 2020 14:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86798 * 120.00045 * 2 1 4 4 H 1.48501 * 109.47066 * 269.99757 * 3 2 1 5 5 H 1.48499 * 109.47281 * 29.99740 * 3 2 1 6 6 H 1.48499 * 109.47395 * 149.99786 * 3 2 1 7 7 C 1.40118 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00654 * 180.02562 * 7 2 1 9 9 C 1.46172 * 119.99944 * 0.02562 * 7 2 1 10 10 O 1.21747 * 119.99689 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00404 * 179.97438 * 9 7 2 12 12 C 1.39525 * 119.99992 * 185.27485 * 11 9 7 13 13 C 1.39030 * 120.08198 * 213.68222 * 12 11 9 14 14 C 1.38062 * 119.91759 * 180.23253 * 13 12 11 15 15 C 1.38331 * 120.08257 * 359.47536 * 14 13 12 16 16 S 1.76197 * 119.92030 * 180.29881 * 15 14 13 17 17 O 1.42099 * 106.40523 * 203.54149 * 16 15 14 18 18 O 1.42105 * 106.39955 * 336.45918 * 16 15 14 19 19 N 1.65601 * 107.21862 * 89.99451 * 16 15 14 20 20 C 1.46511 * 119.99636 * 65.00704 * 19 16 15 21 21 C 1.52993 * 109.47079 * 164.99677 * 20 19 16 22 22 C 1.52995 * 117.50119 * 243.62225 * 21 20 19 23 23 C 1.52998 * 117.50081 * 174.99680 * 21 20 19 24 24 C 1.38330 * 120.16510 * 0.27715 * 15 14 13 25 25 C 1.38068 * 120.08721 * 359.97438 * 24 15 14 26 26 H 0.97000 * 120.00282 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99670 * 5.27453 * 11 9 7 28 28 H 1.07998 * 120.04154 * 0.02562 * 13 12 11 29 29 H 1.07993 * 119.96245 * 179.75003 * 14 13 12 30 30 H 0.97002 * 120.00530 * 245.00113 * 19 16 15 31 31 H 1.09003 * 109.46636 * 284.99546 * 20 19 16 32 32 H 1.08997 * 109.46754 * 44.99365 * 20 19 16 33 33 H 1.09008 * 115.54861 * 29.32714 * 21 20 19 34 34 H 1.09000 * 117.49810 * 359.97438 * 22 21 20 35 35 H 1.08999 * 117.50423 * 145.02511 * 22 21 20 36 36 H 1.08995 * 117.50387 * 214.98234 * 23 21 20 37 37 H 1.09005 * 117.49377 * 0.02562 * 23 21 20 38 38 H 1.08005 * 119.95964 * 180.02562 * 24 15 14 39 39 H 1.08000 * 120.04520 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5379 1.4402 0.7001 7 6 2.0070 -1.2134 0.0005 8 1 3.0869 -1.2135 0.0010 9 6 1.2761 -2.4793 0.0005 10 8 0.0586 -2.4793 0.0005 11 7 1.9499 -3.6466 0.0005 12 6 1.2567 -4.8523 -0.1105 13 6 1.7224 -5.9869 0.5444 14 6 1.0364 -7.1793 0.4282 15 6 -0.1190 -7.2436 -0.3298 16 16 -0.9954 -8.7658 -0.4687 17 8 -1.7465 -8.6881 -1.6725 18 8 -0.0533 -9.7967 -0.2057 19 7 -2.0964 -8.8121 0.7674 20 6 -3.1938 -7.8422 0.8076 21 6 -4.2563 -8.3153 1.8016 22 6 -5.6434 -8.6474 1.2482 23 6 -5.4339 -7.3779 2.0762 24 6 -0.5883 -6.1157 -0.9787 25 6 0.0952 -4.9208 -0.8715 26 1 -0.4850 0.8400 -0.0004 27 1 2.9169 -3.6484 0.0778 28 1 2.6215 -5.9362 1.1405 29 1 1.3997 -8.0620 0.9333 30 1 -2.0149 -9.4814 1.4648 31 1 -2.8094 -6.8716 1.1211 32 1 -3.6374 -7.7543 -0.1841 33 1 -3.8880 -8.9175 2.6323 34 1 -5.7992 -8.5284 0.1759 35 1 -6.1882 -9.4682 1.7146 36 1 -5.8408 -7.3637 3.0873 37 1 -5.4519 -6.4244 1.5483 38 1 -1.4909 -6.1696 -1.5693 39 1 -0.2721 -4.0405 -1.3780 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187306241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:19 Heat of formation + Delta-G solvation = -65.075962 kcal Electronic energy + Delta-G solvation = -24531.544694 eV Core-core repulsion = 20759.696309 eV Total energy + Delta-G solvation = -3771.848385 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.41105 -38.05006 -37.14294 -37.05587 -35.71404 -34.29003 -33.73485 -32.64515 -30.61129 -29.42018 -26.52328 -26.48250 -22.88538 -22.56977 -22.45019 -21.17600 -20.12033 -19.30201 -17.85671 -17.75277 -17.24138 -16.67383 -16.27284 -15.75302 -15.45955 -14.80683 -14.38596 -14.28421 -14.09845 -14.06659 -13.87498 -13.30326 -13.09168 -12.85145 -12.54200 -12.28013 -12.20260 -11.95942 -11.88321 -11.74137 -11.50920 -11.44857 -11.22003 -10.99150 -10.80901 -10.76087 -10.59563 -10.46208 -10.38116 -9.74043 -9.46987 -9.07859 -8.68914 -7.97726 -7.53119 -6.50924 -4.99471 0.56820 1.28556 1.76597 2.97865 3.05687 3.08877 3.09863 3.57123 3.75031 3.86353 4.01930 4.33300 4.35413 4.36923 4.58045 4.69313 4.75835 4.97663 5.13907 5.21388 5.23855 5.44975 5.45555 5.58779 5.66213 5.69068 5.71573 5.86784 5.91835 6.02740 6.03029 6.28529 6.36731 6.59712 6.80877 6.89650 7.11209 7.16258 7.50509 7.78408 7.95396 8.68650 8.96228 10.16858 10.38744 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.003102 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.248621 B = 9023.566233 C =10295.435192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.537 3.463 10 O -0.555 6.555 11 N -0.695 5.695 12 C 0.252 3.748 13 C -0.200 4.200 14 C 0.003 3.997 15 C -0.725 4.725 16 S 2.703 3.297 17 O -0.966 6.966 18 O -0.970 6.970 19 N -1.118 6.118 20 C 0.146 3.854 21 C -0.161 4.161 22 C -0.180 4.180 23 C -0.174 4.174 24 C -0.003 4.003 25 C -0.152 4.152 26 H 0.274 0.726 27 H 0.398 0.602 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.415 0.585 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 -13.588 3.633 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.437 6.437 11 N -0.336 5.336 12 C 0.149 3.851 13 C -0.222 4.222 14 C -0.017 4.017 15 C -0.816 4.816 16 S 2.795 3.205 17 O -0.956 6.956 18 O -0.960 6.960 19 N -0.877 5.877 20 C 0.020 3.980 21 C -0.180 4.180 22 C -0.217 4.217 23 C -0.211 4.211 24 C -0.024 4.024 25 C -0.174 4.174 26 H 0.085 0.915 27 H 0.232 0.768 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.249 0.751 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.444 -13.817 2.844 15.121 hybrid contribution 1.217 1.296 0.822 1.959 sum -4.227 -12.521 3.666 13.714 Atomic orbital electron populations 1.69965 1.07216 1.28137 1.32963 1.25763 0.94769 1.00678 0.92447 0.86227 0.80090 0.80589 0.79124 1.19447 1.20170 1.18706 1.20866 0.93937 0.88815 1.53385 0.90782 1.18484 0.87578 0.81975 0.77475 1.90656 1.13547 1.85842 1.53619 1.44494 1.10149 1.04501 1.74487 1.18330 0.91765 0.86318 0.88653 1.20997 1.03810 0.93131 1.04283 1.20466 0.91377 0.97202 0.92668 1.30253 1.13178 1.20592 1.17582 1.01371 0.72640 0.73660 0.72808 1.93554 1.71273 1.87157 1.43586 1.93554 1.61960 1.55333 1.85169 1.55537 1.41844 1.44466 1.45843 1.20896 0.86180 0.91371 0.99601 1.22405 0.89692 1.04508 1.01410 1.23113 0.98765 0.99369 1.00424 1.23001 1.01356 0.95191 1.01595 1.20681 0.97495 0.90788 0.93424 1.21443 0.96890 0.98505 1.00536 0.91489 0.76812 0.85556 0.85016 0.75068 0.90728 0.90003 0.87156 0.88325 0.88779 0.88516 0.88139 0.84999 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.92 11.82 55.55 0.66 -20.27 16 2 C 0.09 2.20 5.50 -17.36 -0.10 2.10 16 3 Si 0.92 18.64 29.56 -169.99 -5.02 13.61 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.53 -13.84 9.54 -35.69 -0.34 -14.18 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.54 14.05 7.47 -13.07 -0.10 13.95 16 10 O -0.56 -16.34 12.70 5.15 0.07 -16.28 16 11 N -0.70 -14.60 5.32 -11.20 -0.06 -14.66 16 12 C 0.25 4.96 6.28 -83.77 -0.53 4.44 16 13 C -0.20 -3.27 9.97 -39.35 -0.39 -3.66 16 14 C 0.00 0.05 9.51 -39.61 -0.38 -0.33 16 15 C -0.72 -11.22 5.95 -39.51 -0.24 -11.45 16 16 S 2.70 36.93 5.74 -107.50 -0.62 36.31 16 17 O -0.97 -15.62 16.75 -57.17 -0.96 -16.58 16 18 O -0.97 -15.00 17.27 -57.17 -0.99 -15.99 16 19 N -1.12 -11.69 6.00 -10.61 -0.06 -11.76 16 20 C 0.15 1.51 6.50 -4.04 -0.03 1.49 16 21 C -0.16 -1.39 5.90 -90.63 -0.53 -1.93 16 22 C -0.18 -1.44 10.18 -26.73 -0.27 -1.72 16 23 C -0.17 -1.44 10.25 -26.73 -0.27 -1.71 16 24 C 0.00 -0.06 9.51 -39.61 -0.38 -0.43 16 25 C -0.15 -3.07 8.65 -39.35 -0.34 -3.41 16 26 H 0.27 6.87 8.29 -40.82 -0.34 6.53 16 27 H 0.40 7.01 8.80 -40.82 -0.36 6.65 16 28 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.13 1.66 7.61 -52.49 -0.40 1.26 16 30 H 0.42 3.37 8.54 -34.48 -0.29 3.08 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 33 H 0.11 0.83 7.98 -51.92 -0.41 0.42 16 34 H 0.10 0.80 8.03 -51.93 -0.42 0.39 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.13 2.01 7.61 -52.48 -0.40 1.61 16 39 H 0.15 3.35 6.42 -52.49 -0.34 3.01 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -34.41 350.93 -10.26 -44.66 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -4.67 Total: 12.50 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.89 Total: -16.84 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.53 Total: -46.68 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -1.88 Total: -48.85 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 16 Polarization: 36.93 SS G_CDS: -0.62 Total: 36.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.41 -10.26 -44.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187306241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.412 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds