Wall clock time and date at job start Tue Mar 31 2020 14:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86798 * 120.00045 * 2 1 4 4 H 1.48501 * 109.47066 * 269.99757 * 3 2 1 5 5 H 1.48499 * 109.47281 * 29.99740 * 3 2 1 6 6 H 1.48499 * 109.47395 * 149.99786 * 3 2 1 7 7 C 1.40118 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00654 * 180.02562 * 7 2 1 9 9 C 1.46172 * 119.99944 * 0.02562 * 7 2 1 10 10 O 1.21747 * 119.99689 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00404 * 179.97438 * 9 7 2 12 12 C 1.39525 * 119.99992 * 185.27485 * 11 9 7 13 13 C 1.39030 * 120.08198 * 213.68222 * 12 11 9 14 14 C 1.38062 * 119.91759 * 180.23253 * 13 12 11 15 15 C 1.38331 * 120.08257 * 359.47536 * 14 13 12 16 16 S 1.76197 * 119.92030 * 180.29881 * 15 14 13 17 17 O 1.42099 * 106.40523 * 203.54149 * 16 15 14 18 18 O 1.42105 * 106.39955 * 336.45918 * 16 15 14 19 19 N 1.65601 * 107.21862 * 89.99451 * 16 15 14 20 20 C 1.46511 * 119.99636 * 65.00704 * 19 16 15 21 21 C 1.52993 * 109.47079 * 164.99677 * 20 19 16 22 22 C 1.52995 * 117.50119 * 243.62225 * 21 20 19 23 23 C 1.52998 * 117.50081 * 174.99680 * 21 20 19 24 24 C 1.38330 * 120.16510 * 0.27715 * 15 14 13 25 25 C 1.38068 * 120.08721 * 359.97438 * 24 15 14 26 26 H 0.97000 * 120.00282 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99670 * 5.27453 * 11 9 7 28 28 H 1.07998 * 120.04154 * 0.02562 * 13 12 11 29 29 H 1.07993 * 119.96245 * 179.75003 * 14 13 12 30 30 H 0.97002 * 120.00530 * 245.00113 * 19 16 15 31 31 H 1.09003 * 109.46636 * 284.99546 * 20 19 16 32 32 H 1.08997 * 109.46754 * 44.99365 * 20 19 16 33 33 H 1.09008 * 115.54861 * 29.32714 * 21 20 19 34 34 H 1.09000 * 117.49810 * 359.97438 * 22 21 20 35 35 H 1.08999 * 117.50423 * 145.02511 * 22 21 20 36 36 H 1.08995 * 117.50387 * 214.98234 * 23 21 20 37 37 H 1.09005 * 117.49377 * 0.02562 * 23 21 20 38 38 H 1.08005 * 119.95964 * 180.02562 * 24 15 14 39 39 H 1.08000 * 120.04520 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5379 1.4402 0.7001 7 6 2.0070 -1.2134 0.0005 8 1 3.0869 -1.2135 0.0010 9 6 1.2761 -2.4793 0.0005 10 8 0.0586 -2.4793 0.0005 11 7 1.9499 -3.6466 0.0005 12 6 1.2567 -4.8523 -0.1105 13 6 1.7224 -5.9869 0.5444 14 6 1.0364 -7.1793 0.4282 15 6 -0.1190 -7.2436 -0.3298 16 16 -0.9954 -8.7658 -0.4687 17 8 -1.7465 -8.6881 -1.6725 18 8 -0.0533 -9.7967 -0.2057 19 7 -2.0964 -8.8121 0.7674 20 6 -3.1938 -7.8422 0.8076 21 6 -4.2563 -8.3153 1.8016 22 6 -5.6434 -8.6474 1.2482 23 6 -5.4339 -7.3779 2.0762 24 6 -0.5883 -6.1157 -0.9787 25 6 0.0952 -4.9208 -0.8715 26 1 -0.4850 0.8400 -0.0004 27 1 2.9169 -3.6484 0.0778 28 1 2.6215 -5.9362 1.1405 29 1 1.3997 -8.0620 0.9333 30 1 -2.0149 -9.4814 1.4648 31 1 -2.8094 -6.8716 1.1211 32 1 -3.6374 -7.7543 -0.1841 33 1 -3.8880 -8.9175 2.6323 34 1 -5.7992 -8.5284 0.1759 35 1 -6.1882 -9.4682 1.7146 36 1 -5.8408 -7.3637 3.0873 37 1 -5.4519 -6.4244 1.5483 38 1 -1.4909 -6.1696 -1.5693 39 1 -0.2721 -4.0405 -1.3780 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187306241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:19 Heat of formation + Delta-G solvation = -90.832808 kcal Electronic energy + Delta-G solvation = -24532.661594 eV Core-core repulsion = 20759.696309 eV Total energy + Delta-G solvation = -3772.965285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97802 -38.88419 -38.77611 -38.25184 -36.94572 -35.49495 -35.14910 -34.60910 -31.99892 -30.98865 -28.37504 -27.37083 -24.42175 -23.86658 -23.19787 -21.99962 -21.77767 -20.44083 -19.59847 -19.01464 -18.39724 -17.91703 -17.64525 -17.46601 -16.58945 -16.12772 -15.78941 -15.57943 -15.39502 -14.98507 -14.91925 -14.76247 -14.64902 -14.30473 -14.09587 -13.81610 -13.32069 -13.22141 -13.19887 -13.12831 -12.83279 -12.79891 -12.37454 -12.35975 -12.26648 -12.06324 -11.99444 -11.37005 -11.30992 -11.14419 -10.97328 -10.36321 -10.15962 -9.88674 -9.16124 -8.43028 -7.01728 -0.59362 -0.10426 0.37810 1.38601 1.39121 1.55438 1.99662 2.16619 2.26548 2.56175 2.76097 2.79829 2.93378 3.34084 3.48878 3.72648 3.85312 3.92635 4.01057 4.06460 4.26190 4.33365 4.41635 4.48226 4.62424 4.74896 4.84014 4.90502 4.92167 5.01049 5.06996 5.15301 5.20719 5.29326 5.31852 5.34063 5.66697 5.73566 6.07451 6.12585 6.18281 6.72039 7.19217 8.23789 8.49717 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.003102 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.248621 B = 9023.566233 C =10295.435192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.030 3.970 3 Si 1.001 2.999 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.561 4.561 8 H 0.095 0.905 9 C 0.526 3.474 10 O -0.601 6.601 11 N -0.690 5.690 12 C 0.220 3.780 13 C -0.188 4.188 14 C 0.006 3.994 15 C -0.720 4.720 16 S 2.731 3.269 17 O -0.988 6.988 18 O -0.979 6.979 19 N -1.101 6.101 20 C 0.139 3.861 21 C -0.165 4.165 22 C -0.177 4.177 23 C -0.179 4.179 24 C -0.004 4.004 25 C -0.179 4.179 26 H 0.279 0.721 27 H 0.413 0.587 28 H 0.158 0.842 29 H 0.168 0.832 30 H 0.430 0.570 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 -15.085 4.951 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.597 4.597 8 H 0.113 0.887 9 C 0.334 3.666 10 O -0.486 6.486 11 N -0.333 5.333 12 C 0.120 3.880 13 C -0.210 4.210 14 C -0.014 4.014 15 C -0.808 4.808 16 S 2.822 3.178 17 O -0.978 6.978 18 O -0.970 6.970 19 N -0.864 5.864 20 C 0.013 3.987 21 C -0.184 4.184 22 C -0.214 4.214 23 C -0.216 4.216 24 C -0.024 4.024 25 C -0.201 4.201 26 H 0.089 0.911 27 H 0.249 0.751 28 H 0.176 0.824 29 H 0.186 0.814 30 H 0.267 0.733 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.161 0.839 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.276 -15.365 4.166 16.484 hybrid contribution 0.786 1.556 0.410 1.791 sum -3.490 -13.809 4.576 14.961 Atomic orbital electron populations 1.70122 1.09534 1.29576 1.34512 1.26995 0.95577 1.05004 0.91094 0.84952 0.78818 0.74737 0.79476 1.18688 1.19712 1.17023 1.21414 0.95145 0.89376 1.53723 0.88679 1.18790 0.87268 0.83648 0.76936 1.90616 1.15458 1.86993 1.55529 1.43980 1.10734 1.03923 1.74635 1.18568 0.92217 0.86895 0.90326 1.21302 1.04500 0.92004 1.03180 1.20945 0.90596 0.97931 0.91884 1.30686 1.13423 1.20673 1.16055 1.00552 0.72242 0.72401 0.72637 1.93530 1.71679 1.87160 1.45474 1.93538 1.62746 1.55232 1.85436 1.55186 1.40800 1.44752 1.45660 1.20984 0.86555 0.91064 1.00115 1.22423 0.89384 1.05078 1.01536 1.23194 0.98254 0.99612 1.00334 1.23071 1.01270 0.95004 1.02300 1.20763 0.97639 0.90360 0.93670 1.21264 0.98369 0.98415 1.02043 0.91066 0.75065 0.82419 0.81421 0.73280 0.91540 0.90434 0.85474 0.88760 0.87233 0.87301 0.89018 0.83946 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.64 11.82 21.85 0.26 -46.38 16 2 C 0.03 1.58 5.50 85.33 0.47 2.05 16 3 Si 1.00 38.26 29.56 68.60 2.03 40.28 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 7 C -0.56 -29.66 9.54 24.79 0.24 -29.42 16 8 H 0.10 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.53 28.71 7.47 86.30 0.65 29.35 16 10 O -0.60 -37.59 12.70 -4.50 -0.06 -37.65 16 11 N -0.69 -29.73 5.32 -307.53 -1.64 -31.36 16 12 C 0.22 8.84 6.28 38.30 0.24 9.08 16 13 C -0.19 -5.82 9.97 22.42 0.22 -5.60 16 14 C 0.01 0.17 9.51 22.25 0.21 0.39 16 15 C -0.72 -21.30 5.95 22.31 0.13 -21.17 16 16 S 2.73 69.23 5.74 -56.49 -0.32 68.91 16 17 O -0.99 -30.80 16.75 -128.00 -2.14 -32.94 16 18 O -0.98 -27.41 17.27 -128.00 -2.21 -29.62 16 19 N -1.10 -20.58 6.00 -187.48 -1.12 -21.71 16 20 C 0.14 2.73 6.50 86.37 0.56 3.29 16 21 C -0.16 -2.55 5.90 -10.80 -0.06 -2.62 16 22 C -0.18 -2.54 10.18 30.59 0.31 -2.23 16 23 C -0.18 -2.74 10.25 30.59 0.31 -2.43 16 24 C 0.00 -0.15 9.51 22.25 0.21 0.06 16 25 C -0.18 -7.64 8.65 22.42 0.19 -7.44 16 26 H 0.28 14.55 8.29 -92.71 -0.77 13.79 16 27 H 0.41 14.59 8.80 -92.71 -0.82 13.78 16 28 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 29 H 0.17 3.48 7.61 -2.91 -0.02 3.45 16 30 H 0.43 5.67 8.54 -96.74 -0.83 4.84 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.60 7.48 -2.39 -0.02 1.58 16 33 H 0.13 1.54 7.98 -2.38 -0.02 1.52 16 34 H 0.09 1.43 8.03 -2.39 -0.02 1.41 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.14 4.52 7.61 -2.91 -0.02 4.50 16 39 H 0.11 5.40 6.42 -2.91 -0.02 5.38 16 Total: -1.00 -77.43 350.93 -2.06 -79.49 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.53 Total: 37.67 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 3.69 Total: -26.68 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -2.50 Total: -99.46 kcal Atomic # 8 Polarization: -95.80 SS G_CDS: -4.41 Total: -100.21 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 16 Polarization: 69.23 SS G_CDS: -0.32 Total: 68.91 kcal Total: -77.43 -2.06 -79.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187306241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.346 kcal (2) G-P(sol) polarization free energy of solvation -77.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds