Wall clock time and date at job start Tue Mar 31 2020 13:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.47014 * 2 1 4 4 C 1.36552 * 120.03782 * 89.99385 * 3 2 1 5 5 S 1.76199 * 119.04029 * 359.96254 * 4 3 2 6 6 C 1.81004 * 100.00092 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47109 * 304.99430 * 6 5 4 8 8 C 1.52997 * 109.47052 * 65.00100 * 6 5 4 9 9 C 1.53004 * 109.46784 * 184.99786 * 6 5 4 10 10 C 1.50701 * 109.47211 * 65.00334 * 9 6 5 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 6 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47266 * 60.00049 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47383 * 299.99456 * 14 12 10 18 18 N 1.30722 * 121.92187 * 180.23493 * 4 3 2 19 19 C 1.36305 * 121.64924 * 359.48520 * 18 4 3 20 20 C 1.40007 * 128.99445 * 180.21224 * 19 18 4 21 21 C 1.32725 * 115.81838 * 180.27424 * 20 19 18 22 22 S 1.75578 * 110.56362 * 359.97438 * 21 20 19 23 23 C 1.39162 * 118.36693 * 0.50368 * 19 18 4 24 24 C 1.34861 * 120.03532 * 269.97855 * 3 2 1 25 25 O 1.21990 * 120.57027 * 359.97438 * 24 3 2 26 26 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47368 * 299.99973 * 1 2 3 28 28 H 1.09003 * 109.47057 * 60.00560 * 1 2 3 29 29 H 1.08996 * 109.47368 * 240.00027 * 2 1 3 30 30 H 1.09003 * 109.47057 * 119.99440 * 2 1 3 31 31 H 1.08998 * 109.47711 * 59.99698 * 8 6 5 32 32 H 1.09000 * 109.46991 * 180.02562 * 8 6 5 33 33 H 1.09004 * 109.46837 * 299.99581 * 8 6 5 34 34 H 1.09000 * 109.47211 * 304.99361 * 9 6 5 35 35 H 1.09007 * 109.46376 * 184.99903 * 9 6 5 36 36 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 37 37 H 1.08003 * 122.09218 * 0.29679 * 20 19 18 38 38 H 1.07998 * 124.71727 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2461 2.0258 1.1821 5 16 1.9432 1.1725 2.6937 6 6 2.4000 2.4616 3.8793 7 1 3.4143 2.8028 3.6722 8 6 1.4301 3.6381 3.7525 9 6 2.3324 1.8956 5.2992 10 6 3.3737 0.8183 5.4607 11 1 4.0189 0.5626 4.6333 12 6 3.4984 0.1549 6.6629 13 7 2.7125 0.4661 7.6704 14 14 4.7840 -1.1859 6.8607 15 1 6.1345 -0.6156 6.6238 16 1 4.7151 -1.7384 8.2374 17 1 4.5247 -2.2691 5.8786 18 7 2.6772 3.2591 1.2251 19 6 2.9335 3.9672 0.0889 20 6 3.3984 5.2811 -0.0443 21 6 3.5527 5.7163 -1.2886 22 16 3.1111 4.4653 -2.4387 23 6 2.7150 3.3493 -1.1387 24 6 2.2438 2.0176 -1.1675 25 8 2.0450 1.4528 -2.2304 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.4159 3.2968 3.9597 32 1 1.7055 4.4145 4.4662 33 1 1.4783 4.0412 2.7409 34 1 1.3428 1.4740 5.4755 35 1 2.5206 2.6936 6.0177 36 1 2.8001 -0.0009 8.5161 37 1 3.6182 5.9016 0.8120 38 1 3.9021 6.7024 -1.5564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188293957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:19 Heat of formation + Delta-G solvation = 16.353380 kcal Electronic energy + Delta-G solvation = -22760.971265 eV Core-core repulsion = 19435.406792 eV Total energy + Delta-G solvation = -3325.564472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53306 -38.12401 -36.74473 -34.90814 -34.04407 -32.14433 -30.84839 -29.78341 -27.54190 -25.75983 -24.39974 -23.39808 -22.98542 -21.47013 -20.56507 -18.99587 -17.74727 -17.43101 -16.54226 -16.46743 -15.99923 -15.56235 -14.89470 -14.55691 -14.30859 -14.08540 -13.98591 -13.60278 -13.30085 -13.12433 -12.92769 -12.59903 -12.25276 -12.05041 -11.88376 -11.74099 -11.37793 -11.34694 -11.18251 -10.86859 -10.73623 -10.58610 -10.23460 -9.87035 -9.80939 -9.66167 -9.56849 -9.27016 -9.12561 -8.48681 -8.36058 -7.29761 -6.13758 -4.17299 0.17512 1.15768 1.30070 1.46014 1.84152 2.31521 2.45107 2.80129 3.27476 3.32352 3.35007 3.51365 4.11305 4.36272 4.43044 4.82225 4.97067 4.98884 5.02296 5.23734 5.24139 5.47777 5.66024 5.67828 5.68964 5.78958 5.81762 5.83603 6.04637 6.07827 6.20432 6.48250 6.48856 6.53641 6.74611 7.40467 7.44366 7.66911 7.73033 7.82271 8.17542 8.87345 9.48040 10.96913 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.003841 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.387516 B = 7287.596754 C = 8015.983147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 N -0.515 5.515 4 C 0.364 3.636 5 S 0.033 5.967 6 C -0.059 4.059 7 H 0.097 0.903 8 C -0.148 4.148 9 C 0.036 3.964 10 C -0.528 4.528 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.891 5.891 14 Si 0.891 3.109 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.275 1.275 18 N -0.517 5.517 19 C 0.192 3.808 20 C -0.126 4.126 21 C -0.175 4.175 22 S 0.186 5.814 23 C -0.350 4.350 24 C 0.576 3.424 25 O -0.537 6.537 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.154 0.846 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 6.960 -15.565 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.035 4.035 3 N -0.238 5.238 4 C -0.009 4.009 5 S 0.270 5.730 6 C -0.187 4.187 7 H 0.115 0.885 8 C -0.207 4.207 9 C -0.003 4.003 10 C -0.567 4.567 11 H 0.080 0.920 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.719 3.281 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.200 1.200 18 N -0.245 5.245 19 C 0.062 3.938 20 C -0.158 4.158 21 C -0.313 4.313 22 S 0.450 5.550 23 C -0.474 4.474 24 C 0.371 3.629 25 O -0.416 6.416 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.172 0.828 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.582 5.811 -16.750 17.916 hybrid contribution 1.164 0.298 0.895 1.498 sum -1.418 6.109 -15.855 17.050 Atomic orbital electron populations 1.22107 0.93678 1.03574 1.03133 1.22051 0.96414 0.79561 1.05487 1.46405 1.56258 1.15620 1.05495 1.25920 0.90981 0.91286 0.92747 1.86397 1.78161 1.19820 0.88635 1.23789 1.02563 0.94200 0.98183 0.88501 1.22129 0.98352 0.97414 1.02810 1.19130 0.98296 0.96686 0.86158 1.21201 1.18370 1.19075 0.98014 0.91955 1.24968 0.95946 0.97147 0.95839 1.69932 1.38293 1.41756 1.03001 0.86658 0.82070 0.82156 0.77226 1.20128 1.21252 1.20002 1.69080 1.24245 1.04399 1.26822 1.19045 0.93481 0.93705 0.87555 1.19545 1.03947 0.93987 0.98346 1.25728 1.05167 1.03949 0.96413 1.83951 1.63709 1.01600 1.05770 1.24320 1.22590 1.01155 0.99361 1.15736 0.78513 0.85370 0.83329 1.90910 1.54140 1.68469 1.28064 0.90121 0.91217 0.92080 0.88008 0.87754 0.92824 0.91916 0.91233 0.95466 0.94008 0.92698 0.82839 0.80502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.09 1.12 5.63 -4.04 -0.02 1.10 16 3 N -0.51 -8.06 2.61 -119.53 -0.31 -8.37 16 4 C 0.36 5.97 7.59 -88.80 -0.67 5.29 16 5 S 0.03 0.56 18.76 -107.50 -2.02 -1.45 16 6 C -0.06 -1.10 2.14 -26.73 -0.06 -1.16 16 7 H 0.10 1.90 7.95 -51.92 -0.41 1.49 16 8 C -0.15 -2.41 8.96 37.16 0.33 -2.08 16 9 C 0.04 0.84 4.44 -27.88 -0.12 0.71 16 10 C -0.53 -13.55 8.53 -34.44 -0.29 -13.85 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 14 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 N -0.52 -8.55 6.85 -11.14 -0.08 -8.63 16 19 C 0.19 2.93 6.98 -84.87 -0.59 2.34 16 20 C -0.13 -1.50 10.16 -40.80 -0.41 -1.92 16 21 C -0.18 -1.69 11.12 28.85 0.32 -1.36 16 22 S 0.19 2.22 23.29 -107.50 -2.50 -0.28 16 23 C -0.35 -5.47 6.47 -38.08 -0.25 -5.72 16 24 C 0.58 9.79 7.45 -15.06 -0.11 9.68 16 25 O -0.54 -9.96 16.76 4.93 0.08 -9.88 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 1.28 7.45 -51.93 -0.39 0.89 16 30 H 0.10 1.29 6.55 -51.93 -0.34 0.94 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.10 5.64 -51.93 -0.29 0.81 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.15 1.57 8.06 -52.48 -0.42 1.14 16 38 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -30.09 344.19 -10.30 -40.39 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.77 Total: -1.32 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.60 Total: -6.88 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.35 Total: -41.31 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -4.52 Total: -1.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.09 -10.30 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188293957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.742 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds