Wall clock time and date at job start Tue Mar 31 2020 13:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46996 * 2 1 4 4 C 1.36555 * 120.03873 * 270.02232 * 3 2 1 5 5 S 1.76194 * 119.03769 * 0.02562 * 4 3 2 6 6 C 1.81004 * 100.00033 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46888 * 54.99514 * 6 5 4 8 8 C 1.53003 * 109.47340 * 295.00226 * 6 5 4 9 9 C 1.52996 * 109.47285 * 174.99656 * 6 5 4 10 10 C 1.50693 * 109.47141 * 294.99974 * 9 6 5 11 11 H 1.07998 * 120.00545 * 0.02562 * 10 9 6 12 12 C 1.37881 * 119.99727 * 179.97438 * 10 9 6 13 13 N 1.31515 * 120.00121 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00126 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46880 * 60.00359 * 14 12 10 16 16 H 1.48491 * 109.47291 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47149 * 300.00891 * 14 12 10 18 18 N 1.30725 * 121.91900 * 179.97438 * 4 3 2 19 19 C 1.36303 * 121.65377 * 359.97438 * 18 4 3 20 20 C 1.40015 * 128.99920 * 179.97438 * 19 18 4 21 21 C 1.32718 * 115.81726 * 180.02562 * 20 19 18 22 22 S 1.75575 * 110.56726 * 0.02562 * 21 20 19 23 23 C 1.39150 * 118.36486 * 359.97438 * 19 18 4 24 24 C 1.34864 * 120.03318 * 90.00045 * 3 2 1 25 25 O 1.21977 * 120.57303 * 0.02562 * 24 3 2 26 26 H 1.08996 * 109.47474 * 299.99351 * 1 2 3 27 27 H 1.09004 * 109.47020 * 60.00100 * 1 2 3 28 28 H 1.09007 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47089 * 240.00552 * 2 1 3 30 30 H 1.08995 * 109.47202 * 120.00129 * 2 1 3 31 31 H 1.09000 * 109.46590 * 300.00048 * 8 6 5 32 32 H 1.08997 * 109.46920 * 59.99359 * 8 6 5 33 33 H 1.08993 * 109.47377 * 179.97438 * 8 6 5 34 34 H 1.09005 * 109.46982 * 55.00446 * 9 6 5 35 35 H 1.09001 * 109.46957 * 175.00116 * 9 6 5 36 36 H 0.97001 * 119.99979 * 179.97438 * 13 12 10 37 37 H 1.07999 * 122.08731 * 359.75187 * 20 19 18 38 38 H 1.08003 * 124.71247 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2457 2.0259 -1.1821 5 16 1.9427 1.1726 -2.6936 6 6 2.3976 2.4624 -3.8793 7 1 3.4117 2.8046 -3.6725 8 6 1.4267 3.6380 -3.7517 9 6 2.3298 1.8967 -5.2992 10 6 3.3721 0.8205 -5.4615 11 1 4.0180 0.5651 -4.6345 12 6 3.5003 0.1611 -6.6656 13 7 2.7135 0.4717 -7.6726 14 14 4.7918 -1.1736 -6.8667 15 1 4.5367 -2.2607 -5.8877 16 1 4.7260 -1.7225 -8.2448 17 1 6.1397 -0.5982 -6.6272 18 7 2.6807 3.2579 -1.2250 19 6 2.9311 3.9680 -0.0889 20 6 3.3956 5.2821 0.0445 21 6 3.5493 5.7174 1.2888 22 16 3.1078 4.4663 2.4388 23 6 2.7121 3.3503 1.1386 24 6 2.2433 2.0176 1.1676 25 8 2.0442 1.4530 2.2303 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.4127 3.2957 -3.9583 32 1 1.4751 4.0409 -2.7400 33 1 1.7009 4.4148 -4.4653 34 1 1.3405 1.4741 -5.4751 35 1 2.5169 2.6949 -6.0176 36 1 2.8040 0.0080 -8.5197 37 1 3.6191 5.9013 -0.8117 38 1 3.8976 6.7040 1.5567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188293981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:21 Heat of formation + Delta-G solvation = 16.320919 kcal Electronic energy + Delta-G solvation = -22760.617578 eV Core-core repulsion = 19435.051698 eV Total energy + Delta-G solvation = -3325.565880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53352 -38.12542 -36.74595 -34.90825 -34.04438 -32.14385 -30.84755 -29.78362 -27.54278 -25.75958 -24.39959 -23.39802 -22.98534 -21.47036 -20.56483 -18.99507 -17.74699 -17.43135 -16.54299 -16.46743 -15.99905 -15.56251 -14.89507 -14.55686 -14.30825 -14.08421 -13.98546 -13.60381 -13.30339 -13.12244 -12.92798 -12.60083 -12.25251 -12.04906 -11.88390 -11.74104 -11.37860 -11.34682 -11.18258 -10.86854 -10.73601 -10.58625 -10.23511 -9.87238 -9.80820 -9.66180 -9.56960 -9.27083 -9.12577 -8.48655 -8.36056 -7.29701 -6.13780 -4.17274 0.17560 1.15797 1.30113 1.46042 1.84158 2.31519 2.45150 2.80144 3.27470 3.32372 3.35025 3.51397 4.11293 4.36267 4.43031 4.82258 4.97068 4.98871 5.02349 5.23712 5.24129 5.47785 5.65923 5.67844 5.68985 5.78904 5.81796 5.83608 6.04620 6.07739 6.20474 6.48207 6.48829 6.53599 6.74351 7.40504 7.44350 7.66956 7.73047 7.82279 8.17577 8.87374 9.48024 10.96873 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.003840 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.636879 B = 7289.459945 C = 8017.051381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 N -0.515 5.515 4 C 0.364 3.636 5 S 0.033 5.967 6 C -0.059 4.059 7 H 0.097 0.903 8 C -0.148 4.148 9 C 0.036 3.964 10 C -0.528 4.528 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.891 5.891 14 Si 0.891 3.109 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.517 5.517 19 C 0.192 3.808 20 C -0.126 4.126 21 C -0.175 4.175 22 S 0.186 5.814 23 C -0.350 4.350 24 C 0.576 3.424 25 O -0.537 6.537 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.154 0.846 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 6.952 15.566 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.035 4.035 3 N -0.238 5.238 4 C -0.009 4.009 5 S 0.270 5.730 6 C -0.187 4.187 7 H 0.115 0.885 8 C -0.207 4.207 9 C -0.003 4.003 10 C -0.567 4.567 11 H 0.080 0.920 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.719 3.281 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.201 1.201 18 N -0.245 5.245 19 C 0.062 3.938 20 C -0.158 4.158 21 C -0.313 4.313 22 S 0.450 5.550 23 C -0.474 4.474 24 C 0.371 3.629 25 O -0.416 6.416 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.172 0.828 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.585 5.800 16.751 17.914 hybrid contribution 1.166 0.306 -0.897 1.502 sum -1.419 6.106 15.854 17.048 Atomic orbital electron populations 1.22108 0.93680 1.03575 1.03133 1.22050 0.96414 0.79564 1.05487 1.46406 1.56278 1.15604 1.05498 1.25921 0.90942 0.91325 0.92747 1.86396 1.78188 1.19788 0.88631 1.23790 1.02574 0.94195 0.98183 0.88493 1.22125 0.98352 0.97424 1.02788 1.19126 0.98298 0.96684 0.86157 1.21201 1.18290 1.19236 0.97938 0.91955 1.24972 0.95959 0.97127 0.95845 1.69935 1.38239 1.41866 1.02937 0.86657 0.82101 0.82125 0.77225 1.20001 1.21251 1.20130 1.69077 1.24203 1.04442 1.26827 1.19042 0.93492 0.93692 0.87553 1.19545 1.03937 0.93997 0.98346 1.25727 1.05159 1.03956 0.96414 1.83952 1.63718 1.01604 1.05771 1.24321 1.22629 1.01117 0.99360 1.15735 0.78511 0.85370 0.83327 1.90906 1.54101 1.68497 1.28067 0.92080 0.91216 0.90122 0.87754 0.88008 0.92821 0.91265 0.91909 0.95471 0.94006 0.92700 0.82839 0.80502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.09 1.12 5.63 -4.04 -0.02 1.10 16 3 N -0.51 -8.06 2.61 -119.53 -0.31 -8.37 16 4 C 0.36 5.97 7.59 -88.79 -0.67 5.29 16 5 S 0.03 0.56 18.76 -107.50 -2.02 -1.45 16 6 C -0.06 -1.10 2.14 -26.73 -0.06 -1.16 16 7 H 0.10 1.90 7.95 -51.92 -0.41 1.49 16 8 C -0.15 -2.41 8.96 37.16 0.33 -2.08 16 9 C 0.04 0.84 4.44 -27.89 -0.12 0.71 16 10 C -0.53 -13.56 8.53 -34.44 -0.29 -13.85 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 14 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 N -0.52 -8.56 6.86 -11.15 -0.08 -8.63 16 19 C 0.19 2.93 6.98 -84.87 -0.59 2.34 16 20 C -0.13 -1.50 10.16 -40.80 -0.41 -1.92 16 21 C -0.18 -1.69 11.12 28.85 0.32 -1.36 16 22 S 0.19 2.22 23.29 -107.50 -2.50 -0.28 16 23 C -0.35 -5.47 6.47 -38.08 -0.25 -5.72 16 24 C 0.58 9.79 7.45 -15.06 -0.11 9.68 16 25 O -0.54 -9.96 16.75 4.94 0.08 -9.88 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 29 H 0.10 1.28 6.56 -51.92 -0.34 0.94 16 30 H 0.10 1.28 7.45 -51.93 -0.39 0.89 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.10 5.65 -51.93 -0.29 0.80 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -30.09 344.20 -10.30 -40.39 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.77 Total: -1.32 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.60 Total: -6.87 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.35 Total: -41.31 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -4.52 Total: -1.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.09 -10.30 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188293981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.710 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds