Wall clock time and date at job start Tue Mar 31 2020 13:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46996 * 2 1 4 4 C 1.36555 * 120.03873 * 270.02232 * 3 2 1 5 5 S 1.76194 * 119.03769 * 0.02562 * 4 3 2 6 6 C 1.81004 * 100.00033 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46888 * 54.99514 * 6 5 4 8 8 C 1.53003 * 109.47340 * 295.00226 * 6 5 4 9 9 C 1.52996 * 109.47285 * 174.99656 * 6 5 4 10 10 C 1.50693 * 109.47141 * 294.99974 * 9 6 5 11 11 H 1.07998 * 120.00545 * 0.02562 * 10 9 6 12 12 C 1.37881 * 119.99727 * 179.97438 * 10 9 6 13 13 N 1.31515 * 120.00121 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00126 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46880 * 60.00359 * 14 12 10 16 16 H 1.48491 * 109.47291 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47149 * 300.00891 * 14 12 10 18 18 N 1.30725 * 121.91900 * 179.97438 * 4 3 2 19 19 C 1.36303 * 121.65377 * 359.97438 * 18 4 3 20 20 C 1.40015 * 128.99920 * 179.97438 * 19 18 4 21 21 C 1.32718 * 115.81726 * 180.02562 * 20 19 18 22 22 S 1.75575 * 110.56726 * 0.02562 * 21 20 19 23 23 C 1.39150 * 118.36486 * 359.97438 * 19 18 4 24 24 C 1.34864 * 120.03318 * 90.00045 * 3 2 1 25 25 O 1.21977 * 120.57303 * 0.02562 * 24 3 2 26 26 H 1.08996 * 109.47474 * 299.99351 * 1 2 3 27 27 H 1.09004 * 109.47020 * 60.00100 * 1 2 3 28 28 H 1.09007 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47089 * 240.00552 * 2 1 3 30 30 H 1.08995 * 109.47202 * 120.00129 * 2 1 3 31 31 H 1.09000 * 109.46590 * 300.00048 * 8 6 5 32 32 H 1.08997 * 109.46920 * 59.99359 * 8 6 5 33 33 H 1.08993 * 109.47377 * 179.97438 * 8 6 5 34 34 H 1.09005 * 109.46982 * 55.00446 * 9 6 5 35 35 H 1.09001 * 109.46957 * 175.00116 * 9 6 5 36 36 H 0.97001 * 119.99979 * 179.97438 * 13 12 10 37 37 H 1.07999 * 122.08731 * 359.75187 * 20 19 18 38 38 H 1.08003 * 124.71247 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2457 2.0259 -1.1821 5 16 1.9427 1.1726 -2.6936 6 6 2.3976 2.4624 -3.8793 7 1 3.4117 2.8046 -3.6725 8 6 1.4267 3.6380 -3.7517 9 6 2.3298 1.8967 -5.2992 10 6 3.3721 0.8205 -5.4615 11 1 4.0180 0.5651 -4.6345 12 6 3.5003 0.1611 -6.6656 13 7 2.7135 0.4717 -7.6726 14 14 4.7918 -1.1736 -6.8667 15 1 4.5367 -2.2607 -5.8877 16 1 4.7260 -1.7225 -8.2448 17 1 6.1397 -0.5982 -6.6272 18 7 2.6807 3.2579 -1.2250 19 6 2.9311 3.9680 -0.0889 20 6 3.3956 5.2821 0.0445 21 6 3.5493 5.7174 1.2888 22 16 3.1078 4.4663 2.4388 23 6 2.7121 3.3503 1.1386 24 6 2.2433 2.0176 1.1676 25 8 2.0442 1.4530 2.2303 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.4127 3.2957 -3.9583 32 1 1.4751 4.0409 -2.7400 33 1 1.7009 4.4148 -4.4653 34 1 1.3405 1.4741 -5.4751 35 1 2.5169 2.6949 -6.0176 36 1 2.8040 0.0080 -8.5197 37 1 3.6191 5.9013 -0.8117 38 1 3.8976 6.7040 1.5567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188293981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:21 Heat of formation + Delta-G solvation = 1.306701 kcal Electronic energy + Delta-G solvation = -22761.268644 eV Core-core repulsion = 19435.051698 eV Total energy + Delta-G solvation = -3326.216945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.72717 -39.28459 -37.90891 -36.52518 -35.26977 -33.96441 -31.99140 -30.85417 -29.31116 -26.88194 -25.54388 -25.21474 -24.00294 -22.78046 -21.88429 -20.17708 -18.91169 -18.62931 -18.47577 -17.68013 -17.16709 -16.84857 -16.54987 -16.16776 -15.33720 -15.17876 -14.96978 -14.78974 -14.66933 -14.48149 -14.20449 -13.90852 -13.55474 -13.31171 -13.19613 -13.14396 -13.04887 -12.58681 -12.46673 -12.39507 -12.23658 -12.09850 -11.57488 -11.42604 -11.26549 -11.13453 -11.00115 -10.83172 -10.51186 -10.16767 -9.54108 -8.52758 -8.17455 -6.26379 -0.92194 -0.07473 0.16045 0.38763 0.88569 1.10737 1.22738 1.45163 1.45451 1.53105 1.54286 2.33772 2.43859 3.02902 3.18397 3.31414 3.77775 3.93822 3.99575 4.14570 4.16625 4.28354 4.31306 4.49798 4.61801 4.68781 4.79598 4.89809 4.91830 4.99001 5.08499 5.12601 5.16501 5.31612 5.36785 5.45024 5.54917 5.80444 6.19359 6.45291 6.48449 6.86178 7.42438 8.93514 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.003840 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.636879 B = 7289.459945 C = 8017.051381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.080 3.920 3 N -0.514 5.514 4 C 0.359 3.641 5 S 0.038 5.962 6 C -0.054 4.054 7 H 0.088 0.912 8 C -0.138 4.138 9 C 0.044 3.956 10 C -0.535 4.535 11 H 0.064 0.936 12 C 0.012 3.988 13 N -0.927 5.927 14 Si 0.950 3.050 15 H -0.266 1.266 16 H -0.286 1.286 17 H -0.271 1.271 18 N -0.526 5.526 19 C 0.178 3.822 20 C -0.147 4.147 21 C -0.136 4.136 22 S 0.205 5.795 23 C -0.384 4.384 24 C 0.566 3.434 25 O -0.564 6.564 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.008 0.992 35 H 0.020 0.980 36 H 0.263 0.737 37 H 0.172 0.828 38 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.377 8.014 17.023 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.041 4.041 3 N -0.236 5.236 4 C -0.016 4.016 5 S 0.274 5.726 6 C -0.183 4.183 7 H 0.106 0.894 8 C -0.197 4.197 9 C 0.005 3.995 10 C -0.573 4.573 11 H 0.083 0.917 12 C -0.187 4.187 13 N -0.567 5.567 14 Si 0.776 3.224 15 H -0.191 1.191 16 H -0.212 1.212 17 H -0.196 1.196 18 N -0.254 5.254 19 C 0.048 3.952 20 C -0.178 4.178 21 C -0.273 4.273 22 S 0.469 5.531 23 C -0.508 4.508 24 C 0.362 3.638 25 O -0.445 6.445 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.026 0.974 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.189 0.811 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.793 6.876 18.217 19.553 hybrid contribution 0.947 0.090 -1.210 1.539 sum -0.847 6.966 17.006 18.397 Atomic orbital electron populations 1.22078 0.92361 1.05048 1.02290 1.22267 0.97534 0.78524 1.05786 1.46475 1.55824 1.16309 1.05015 1.25632 0.91862 0.91608 0.92452 1.86225 1.78732 1.19053 0.88617 1.23500 1.02995 0.95429 0.96400 0.89366 1.22036 0.97741 0.96502 1.03375 1.18903 0.96538 0.95483 0.88563 1.21554 1.18435 1.19464 0.97866 0.91746 1.25751 0.97859 0.99314 0.95733 1.70050 1.40010 1.43261 1.03412 0.85715 0.79772 0.79735 0.77208 1.19115 1.21167 1.19605 1.68998 1.23728 1.04551 1.28079 1.19501 0.93897 0.94958 0.86893 1.19756 1.05094 0.92925 0.99985 1.26278 1.01663 1.04719 0.94687 1.83912 1.62826 1.01182 1.05211 1.24583 1.23611 1.01297 1.01264 1.16027 0.78474 0.86044 0.83210 1.90874 1.55661 1.69228 1.28738 0.93098 0.91721 0.87521 0.87255 0.87751 0.92510 0.90500 0.91332 0.97358 0.96147 0.92766 0.81058 0.75833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 10.24 71.98 0.74 -2.79 16 2 C 0.08 2.05 5.63 86.38 0.49 2.54 16 3 N -0.51 -16.07 2.61 -650.14 -1.70 -17.77 16 4 C 0.36 11.70 7.59 179.71 1.36 13.06 16 5 S 0.04 1.28 18.76 -56.49 -1.06 0.22 16 6 C -0.05 -2.05 2.14 30.59 0.07 -1.99 16 7 H 0.09 3.47 7.95 -2.39 -0.02 3.46 16 8 C -0.14 -4.43 8.96 71.98 0.64 -3.78 16 9 C 0.04 2.08 4.44 29.84 0.13 2.21 16 10 C -0.53 -27.71 8.53 25.60 0.22 -27.49 16 11 H 0.06 3.25 7.60 -2.91 -0.02 3.22 16 12 C 0.01 0.66 5.46 84.66 0.46 1.12 16 13 N -0.93 -52.94 13.29 21.45 0.28 -52.65 16 14 Si 0.95 42.11 29.54 68.60 2.03 44.13 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 N -0.53 -17.05 6.86 -189.18 -1.30 -18.35 16 19 C 0.18 5.20 6.98 39.10 0.27 5.47 16 20 C -0.15 -3.08 10.16 21.53 0.22 -2.86 16 21 C -0.14 -2.07 11.12 66.65 0.74 -1.33 16 22 S 0.21 4.42 23.29 -56.49 -1.32 3.10 16 23 C -0.38 -11.66 6.47 23.24 0.15 -11.51 16 24 C 0.57 19.23 7.45 84.98 0.63 19.86 16 25 O -0.56 -21.04 16.75 -5.24 -0.09 -21.13 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.11 2.66 6.56 -2.38 -0.02 2.64 16 30 H 0.10 2.61 7.45 -2.39 -0.02 2.60 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 2.37 5.65 -2.39 -0.01 2.35 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 37 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.23 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -65.83 344.20 4.06 -61.77 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.08 Total: 8.15 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 6.13 Total: -7.48 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -2.71 Total: -88.77 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.09 Total: -21.13 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -2.38 Total: 3.32 kcal Total: -65.83 4.06 -61.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188293981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.075 kcal (2) G-P(sol) polarization free energy of solvation -65.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds