Wall clock time and date at job start Tue Mar 31 2020 14:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47089 * 239.99887 * 3 2 1 5 5 H 1.48495 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46979 * 120.00001 * 3 2 1 7 7 C 1.37874 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00366 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47427 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.46963 * 180.02562 * 10 9 7 12 12 C 1.81398 * 102.99822 * 180.02562 * 11 10 9 13 13 C 1.50708 * 109.47055 * 179.97438 * 12 11 10 14 14 C 1.39884 * 125.87993 * 270.01280 * 13 12 11 15 15 C 1.35356 * 107.92721 * 179.73641 * 14 13 12 16 16 N 1.35182 * 107.71811 * 0.37153 * 15 14 13 17 17 C 1.40320 * 126.04929 * 179.89608 * 16 15 14 18 18 C 1.38975 * 120.08785 * 359.43248 * 17 16 15 19 19 F 1.35098 * 120.04542 * 0.26220 * 18 17 16 20 20 C 1.38358 * 119.91565 * 180.27440 * 18 17 16 21 21 C 1.38260 * 120.08432 * 0.02562 * 20 18 17 22 22 C 1.38256 * 120.17161 * 359.97438 * 21 20 18 23 23 C 1.38350 * 120.08877 * 0.02562 * 22 21 20 24 24 F 1.35102 * 120.04740 * 180.02562 * 23 22 21 25 25 N 1.30903 * 125.87722 * 89.97908 * 13 12 11 26 26 H 0.97005 * 119.99768 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46750 * 60.00073 * 9 7 2 28 28 H 1.08993 * 109.47080 * 300.00629 * 9 7 2 29 29 H 1.08999 * 109.46528 * 60.00593 * 10 9 7 30 30 H 1.09002 * 109.47474 * 300.00241 * 10 9 7 31 31 H 1.09002 * 109.47199 * 60.00463 * 12 11 10 32 32 H 1.08999 * 109.47114 * 300.00079 * 12 11 10 33 33 H 1.07998 * 126.03872 * 359.97029 * 14 13 12 34 34 H 1.08001 * 126.13563 * 180.26774 * 15 14 13 35 35 H 1.07999 * 119.95757 * 180.02562 * 20 18 17 36 36 H 1.07998 * 119.91315 * 180.02562 * 21 20 18 37 37 H 1.08003 * 119.95948 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 16 1.3382 -5.2330 0.0021 12 6 2.6649 -6.4701 0.0025 13 6 2.0632 -7.8519 0.0037 14 6 1.7361 -8.6027 1.1377 15 6 1.2165 -9.7812 0.7216 16 7 1.2228 -9.7792 -0.6302 17 6 0.7697 -10.8163 -1.4597 18 6 0.2661 -11.9852 -0.9017 19 9 0.2069 -12.1230 0.4409 20 6 -0.1744 -13.0078 -1.7230 21 6 -0.1136 -12.8682 -3.0971 22 6 0.3868 -11.7068 -3.6561 23 6 0.8292 -10.6797 -2.8416 24 9 1.3176 -9.5450 -3.3886 25 7 1.7562 -8.5559 -1.0564 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8725 -3.6039 0.8910 30 1 2.8713 -3.6048 -0.8890 31 1 3.2810 -6.3419 0.8925 32 1 3.2810 -6.3425 -0.8875 33 1 1.8704 -8.2947 2.1641 34 1 0.8622 -10.5805 1.3557 35 1 -0.5663 -13.9163 -1.2900 36 1 -0.4586 -13.6680 -3.7356 37 1 0.4331 -11.6015 -4.7299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190986305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:18 Heat of formation + Delta-G solvation = 18.501375 kcal Electronic energy + Delta-G solvation = -23162.228985 eV Core-core repulsion = 19282.917270 eV Total energy + Delta-G solvation = -3879.311715 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.74873 -49.16567 -41.62719 -39.24748 -34.50022 -33.65072 -31.20323 -30.95173 -30.82701 -30.02900 -27.80322 -25.21269 -23.82016 -23.38658 -21.59076 -21.23298 -19.95774 -18.76859 -18.22298 -17.32623 -16.80438 -16.48503 -16.10572 -15.83274 -15.70646 -15.58397 -15.36277 -14.89156 -14.48206 -14.36410 -13.94826 -13.87822 -13.47872 -13.18797 -13.06201 -12.65181 -12.55270 -12.29879 -12.10366 -11.94881 -11.49972 -10.99121 -10.81529 -10.74720 -10.50047 -10.15439 -9.62784 -9.59631 -9.36864 -9.22328 -9.03865 -8.39164 -8.35437 -7.09738 -6.03049 -4.07691 0.10100 0.34967 1.59008 1.91557 2.04335 2.84655 2.97067 3.16086 3.25611 3.32656 3.37204 3.39786 3.68689 3.87169 4.10745 4.40368 4.44252 4.49371 4.55293 4.84592 5.03071 5.14436 5.30279 5.32299 5.35654 5.45696 5.56074 5.57144 5.58716 5.81871 6.01154 6.03236 6.21298 6.38115 6.74328 6.76107 7.40413 7.59745 7.68749 7.93235 8.30235 8.97080 9.55903 11.07721 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.002167 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.554762 B =12919.356522 C =13421.449910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.062 4.062 11 S -0.259 6.259 12 C -0.017 4.017 13 C 0.112 3.888 14 C -0.236 4.236 15 C 0.041 3.959 16 N -0.331 5.331 17 C 0.104 3.896 18 C 0.101 3.899 19 F -0.123 7.123 20 C -0.136 4.136 21 C -0.077 4.077 22 C -0.140 4.140 23 C 0.127 3.873 24 F -0.103 7.103 25 N -0.262 5.262 26 H 0.263 0.737 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.192 0.808 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -31.132 -3.136 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.210 4.210 11 S -0.033 6.033 12 C -0.167 4.167 13 C -0.057 4.057 14 C -0.265 4.265 15 C -0.099 4.099 16 N -0.106 5.106 17 C 0.008 3.992 18 C 0.079 3.921 19 F -0.102 7.102 20 C -0.156 4.156 21 C -0.095 4.095 22 C -0.159 4.159 23 C 0.105 3.895 24 F -0.081 7.081 25 N -0.082 5.082 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.178 0.822 34 H 0.208 0.792 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.018 -31.233 -4.374 31.538 hybrid contribution 1.777 1.349 1.129 2.501 sum 1.759 -29.884 -3.245 30.111 Atomic orbital electron populations 1.69965 1.06077 1.26956 1.49933 1.25017 0.94903 0.99299 0.95084 0.86573 0.79506 0.82769 0.78658 1.20151 1.21197 1.20151 1.21058 0.92975 0.90224 1.51833 0.92453 1.18896 0.93426 0.89168 0.98595 1.23747 1.01563 0.92328 1.03319 1.87226 1.15721 1.02251 1.98060 1.21579 0.99305 0.89687 1.06122 1.21806 0.97614 0.95238 0.91001 1.21601 1.09923 0.94564 1.00363 1.23214 1.01783 1.01089 0.83820 1.45574 1.48368 1.12453 1.04217 1.17602 1.04189 0.87810 0.89585 1.16976 1.03835 0.93534 0.77762 1.91432 1.94262 1.95625 1.28859 1.21082 1.02181 0.98652 0.93641 1.20923 0.97372 0.97292 0.93952 1.21255 1.00786 0.92605 1.01277 1.17072 0.99298 0.85045 0.88064 1.91672 1.84434 1.47060 1.84890 1.77759 1.18034 0.90789 1.21579 0.92734 0.95512 0.95489 0.91161 0.91207 0.88126 0.88720 0.82177 0.79180 0.82967 0.83193 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.04 1.01 4.98 -27.88 -0.14 0.87 16 10 C -0.06 -1.31 5.88 37.16 0.22 -1.09 16 11 S -0.26 -5.09 21.72 -107.50 -2.33 -7.43 16 12 C -0.02 -0.27 6.50 36.01 0.23 -0.03 16 13 C 0.11 1.75 6.48 -82.37 -0.53 1.21 16 14 C -0.24 -3.12 10.74 -39.99 -0.43 -3.54 16 15 C 0.04 0.50 10.54 -17.10 -0.18 0.32 16 16 N -0.33 -4.69 3.80 -10.60 -0.04 -4.73 16 17 C 0.10 1.21 6.70 -83.42 -0.56 0.65 16 18 C 0.10 0.88 7.23 -39.26 -0.28 0.60 16 19 F -0.12 -1.07 13.95 2.25 0.03 -1.04 16 20 C -0.14 -0.74 10.02 -39.53 -0.40 -1.13 16 21 C -0.08 -0.34 10.04 -39.57 -0.40 -0.74 16 22 C -0.14 -0.94 10.02 -39.53 -0.40 -1.33 16 23 C 0.13 1.39 7.29 -39.26 -0.29 1.10 16 24 F -0.10 -1.44 15.54 2.25 0.03 -1.40 16 25 N -0.26 -4.37 10.81 33.69 0.36 -4.00 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 30 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 31 H 0.10 1.31 8.14 -51.92 -0.42 0.89 16 32 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 33 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.19 1.78 5.72 -52.49 -0.30 1.48 16 35 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 36 H 0.15 0.17 8.06 -52.49 -0.42 -0.25 16 37 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -34.00 343.79 -8.68 -42.68 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -4.07 Total: -3.02 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.56 Total: -16.58 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 1.06 Total: -35.01 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.07 Total: -2.44 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -2.33 Total: -7.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.00 -8.68 -42.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190986305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.182 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds