Wall clock time and date at job start Tue Mar 31 2020 14:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47089 * 239.99887 * 3 2 1 5 5 H 1.48495 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46979 * 120.00001 * 3 2 1 7 7 C 1.37874 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00366 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47427 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.46963 * 180.02562 * 10 9 7 12 12 C 1.81398 * 102.99822 * 180.02562 * 11 10 9 13 13 C 1.50708 * 109.47055 * 179.97438 * 12 11 10 14 14 C 1.39884 * 125.87993 * 270.01280 * 13 12 11 15 15 C 1.35356 * 107.92721 * 179.73641 * 14 13 12 16 16 N 1.35182 * 107.71811 * 0.37153 * 15 14 13 17 17 C 1.40320 * 126.04929 * 179.89608 * 16 15 14 18 18 C 1.38975 * 120.08785 * 359.43248 * 17 16 15 19 19 F 1.35098 * 120.04542 * 0.26220 * 18 17 16 20 20 C 1.38358 * 119.91565 * 180.27440 * 18 17 16 21 21 C 1.38260 * 120.08432 * 0.02562 * 20 18 17 22 22 C 1.38256 * 120.17161 * 359.97438 * 21 20 18 23 23 C 1.38350 * 120.08877 * 0.02562 * 22 21 20 24 24 F 1.35102 * 120.04740 * 180.02562 * 23 22 21 25 25 N 1.30903 * 125.87722 * 89.97908 * 13 12 11 26 26 H 0.97005 * 119.99768 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46750 * 60.00073 * 9 7 2 28 28 H 1.08993 * 109.47080 * 300.00629 * 9 7 2 29 29 H 1.08999 * 109.46528 * 60.00593 * 10 9 7 30 30 H 1.09002 * 109.47474 * 300.00241 * 10 9 7 31 31 H 1.09002 * 109.47199 * 60.00463 * 12 11 10 32 32 H 1.08999 * 109.47114 * 300.00079 * 12 11 10 33 33 H 1.07998 * 126.03872 * 359.97029 * 14 13 12 34 34 H 1.08001 * 126.13563 * 180.26774 * 15 14 13 35 35 H 1.07999 * 119.95757 * 180.02562 * 20 18 17 36 36 H 1.07998 * 119.91315 * 180.02562 * 21 20 18 37 37 H 1.08003 * 119.95948 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 16 1.3382 -5.2330 0.0021 12 6 2.6649 -6.4701 0.0025 13 6 2.0632 -7.8519 0.0037 14 6 1.7361 -8.6027 1.1377 15 6 1.2165 -9.7812 0.7216 16 7 1.2228 -9.7792 -0.6302 17 6 0.7697 -10.8163 -1.4597 18 6 0.2661 -11.9852 -0.9017 19 9 0.2069 -12.1230 0.4409 20 6 -0.1744 -13.0078 -1.7230 21 6 -0.1136 -12.8682 -3.0971 22 6 0.3868 -11.7068 -3.6561 23 6 0.8292 -10.6797 -2.8416 24 9 1.3176 -9.5450 -3.3886 25 7 1.7562 -8.5559 -1.0564 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8725 -3.6039 0.8910 30 1 2.8713 -3.6048 -0.8890 31 1 3.2810 -6.3419 0.8925 32 1 3.2810 -6.3425 -0.8875 33 1 1.8704 -8.2947 2.1641 34 1 0.8622 -10.5805 1.3557 35 1 -0.5663 -13.9163 -1.2900 36 1 -0.4586 -13.6680 -3.7356 37 1 0.4331 -11.6015 -4.7299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190986305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:18 Heat of formation + Delta-G solvation = -0.334925 kcal Electronic energy + Delta-G solvation = -23163.045789 eV Core-core repulsion = 19282.917270 eV Total energy + Delta-G solvation = -3880.128518 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.38967 -50.03665 -42.62270 -39.85520 -35.78202 -35.38602 -32.91337 -32.10547 -31.55022 -31.02172 -28.78371 -27.28772 -24.51477 -24.13771 -23.16920 -22.45626 -21.07500 -19.54250 -18.94283 -18.67086 -18.04054 -17.59128 -17.16036 -16.80404 -16.52849 -16.48171 -16.35122 -16.15536 -16.00328 -15.66012 -15.15164 -14.94416 -14.80713 -14.51736 -14.10761 -13.84080 -13.55184 -13.36163 -13.16637 -12.97947 -12.89028 -12.77135 -12.48915 -12.16469 -11.86756 -11.75146 -11.67857 -11.13615 -10.84418 -10.60122 -10.31283 -9.96105 -9.23674 -8.68274 -8.22743 -6.36684 -0.60621 -0.22401 0.35192 1.02099 1.06110 1.40961 1.45109 1.52884 1.60842 1.89979 2.26602 2.40999 2.51754 2.93192 3.10319 3.24668 3.50811 3.56304 3.67879 3.91270 4.08314 4.27162 4.30321 4.34735 4.37998 4.46889 4.54181 4.61162 4.79685 4.85751 4.87207 4.96286 5.08359 5.31579 5.37913 5.48862 5.52673 5.73590 5.88776 6.10454 6.35138 6.77491 7.32707 8.89018 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.002167 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.554762 B =12919.356522 C =13421.449910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.044 3.956 10 C -0.047 4.047 11 S -0.298 6.298 12 C 0.003 3.997 13 C 0.089 3.911 14 C -0.247 4.247 15 C 0.045 3.955 16 N -0.333 5.333 17 C 0.059 3.941 18 C 0.095 3.905 19 F -0.125 7.125 20 C -0.120 4.120 21 C -0.052 4.052 22 C -0.133 4.133 23 C 0.091 3.909 24 F -0.133 7.133 25 N -0.301 5.301 26 H 0.265 0.735 27 H -0.008 1.008 28 H -0.002 1.002 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.182 0.818 34 H 0.219 0.781 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 -33.867 -3.289 34.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.088 0.912 9 C 0.006 3.994 10 C -0.195 4.195 11 S -0.072 6.072 12 C -0.146 4.146 13 C -0.079 4.079 14 C -0.276 4.276 15 C -0.096 4.096 16 N -0.109 5.109 17 C -0.035 4.035 18 C 0.073 3.927 19 F -0.104 7.104 20 C -0.139 4.139 21 C -0.070 4.070 22 C -0.152 4.152 23 C 0.069 3.931 24 F -0.111 7.111 25 N -0.123 5.123 26 H 0.074 0.926 27 H 0.011 0.989 28 H 0.016 0.984 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.146 0.854 32 H 0.115 0.885 33 H 0.199 0.801 34 H 0.235 0.765 35 H 0.207 0.793 36 H 0.216 0.784 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.580 -33.982 -4.538 34.289 hybrid contribution 1.484 1.879 1.088 2.630 sum 2.065 -32.103 -3.450 32.354 Atomic orbital electron populations 1.70121 1.08056 1.28128 1.50951 1.26070 0.95815 1.03685 0.94366 0.85363 0.78116 0.77348 0.79385 1.18998 1.20911 1.18740 1.21521 0.93794 0.91185 1.51603 0.91182 1.18673 0.93734 0.91485 0.95515 1.23384 1.00190 0.91565 1.04399 1.87305 1.18608 1.03058 1.98213 1.21557 0.97380 0.88080 1.07582 1.21885 0.98777 0.95350 0.91841 1.21894 1.10244 0.94644 1.00800 1.23709 1.00811 1.01489 0.83554 1.45780 1.47766 1.12227 1.05139 1.18130 1.06854 0.88539 0.89989 1.17292 1.03974 0.93387 0.78043 1.91410 1.94293 1.95542 1.29150 1.21616 0.99967 0.98519 0.93771 1.21526 0.94378 0.97004 0.94086 1.21646 0.99431 0.92013 1.02083 1.17656 1.01302 0.85496 0.88624 1.91585 1.85289 1.48963 1.85265 1.77651 1.19319 0.92388 1.22906 0.92580 0.98932 0.98378 0.89540 0.90476 0.85368 0.88503 0.80109 0.76512 0.79291 0.78443 0.80805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.21 13.29 21.45 0.28 -57.92 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 9 C 0.04 2.46 4.98 29.85 0.15 2.61 16 10 C -0.05 -2.06 5.88 71.98 0.42 -1.64 16 11 S -0.30 -12.11 21.72 -56.49 -1.23 -13.34 16 12 C 0.00 0.10 6.50 71.24 0.46 0.56 16 13 C 0.09 2.83 6.48 43.10 0.28 3.11 16 14 C -0.25 -6.51 10.74 22.00 0.24 -6.28 16 15 C 0.04 1.11 10.54 83.51 0.88 1.99 16 16 N -0.33 -9.70 3.80 -187.44 -0.71 -10.42 16 17 C 0.06 1.39 6.70 38.14 0.26 1.64 16 18 C 0.10 1.48 7.23 22.48 0.16 1.65 16 19 F -0.13 -1.95 13.95 44.97 0.63 -1.32 16 20 C -0.12 -0.81 10.02 22.30 0.22 -0.58 16 21 C -0.05 -0.23 10.04 22.28 0.22 0.00 16 22 C -0.13 -1.48 10.02 22.30 0.22 -1.26 16 23 C 0.09 2.01 7.29 22.48 0.16 2.17 16 24 F -0.13 -3.98 15.54 44.97 0.70 -3.29 16 25 N -0.30 -10.51 10.81 -47.34 -0.51 -11.03 16 26 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 27 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 28 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 34 H 0.22 3.84 5.72 -2.91 -0.02 3.83 16 35 H 0.19 -0.07 8.06 -2.91 -0.02 -0.10 16 36 H 0.20 -0.91 8.06 -2.91 -0.02 -0.93 16 37 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -79.44 343.79 6.66 -72.78 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.10 Total: 4.58 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 4.38 Total: -26.57 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -0.94 Total: -79.36 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 1.33 Total: -4.61 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -12.11 SS G_CDS: -1.23 Total: -13.34 kcal Total: -79.44 6.66 -72.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190986305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.442 kcal (2) G-P(sol) polarization free energy of solvation -79.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds