Wall clock time and date at job start Tue Mar 31 2020 14:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00286 * 2 1 4 4 H 1.48500 * 109.46753 * 240.00349 * 3 2 1 5 5 H 1.48497 * 109.46716 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46904 * 120.00395 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99640 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46835 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.81402 * 102.99877 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47049 * 179.97438 * 12 11 10 14 14 C 1.39884 * 125.88410 * 269.98081 * 13 12 11 15 15 C 1.35343 * 107.93232 * 180.02562 * 14 13 12 16 16 N 1.35184 * 107.71995 * 359.97438 * 15 14 13 17 17 C 1.40315 * 126.05610 * 179.97438 * 16 15 14 18 18 C 1.38783 * 120.05160 * 180.02562 * 17 16 15 19 19 C 1.38127 * 119.98342 * 180.02562 * 18 17 16 20 20 C 1.38501 * 120.08214 * 359.97303 * 19 18 17 21 21 F 1.35102 * 119.94794 * 180.02562 * 20 19 18 22 22 C 1.38450 * 120.10596 * 0.02562 * 20 19 18 23 23 C 1.38321 * 120.01261 * 359.72362 * 22 20 19 24 24 F 1.35096 * 120.04149 * 180.27199 * 23 22 20 25 25 N 1.30899 * 125.87454 * 90.02647 * 13 12 11 26 26 H 0.97004 * 119.99950 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47398 * 59.99989 * 9 7 2 28 28 H 1.08997 * 109.47122 * 299.99916 * 9 7 2 29 29 H 1.08998 * 109.47324 * 59.99714 * 10 9 7 30 30 H 1.08997 * 109.47010 * 299.99755 * 10 9 7 31 31 H 1.09001 * 109.47191 * 59.99892 * 12 11 10 32 32 H 1.08991 * 109.47104 * 299.99643 * 12 11 10 33 33 H 1.07998 * 126.03470 * 0.06363 * 14 13 12 34 34 H 1.08001 * 126.14104 * 180.02562 * 15 14 13 35 35 H 1.08003 * 120.01346 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.95652 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.99279 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 6 2.6647 -6.4702 -0.0020 13 6 2.0631 -7.8520 -0.0020 14 6 1.7365 -8.6041 1.1313 15 6 1.2227 -9.7847 0.7141 16 7 1.2238 -9.7791 -0.6377 17 6 0.7725 -10.8162 -1.4682 18 6 0.8320 -10.6776 -2.8478 19 6 0.3869 -11.6992 -3.6640 20 6 -0.1184 -12.8625 -3.1074 21 9 -0.5525 -13.8601 -3.9083 22 6 -0.1793 -13.0045 -1.7316 23 6 0.2701 -11.9862 -0.9103 24 9 0.2160 -12.1264 0.4322 25 7 1.7569 -8.5553 -1.0627 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5568 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6044 -0.8905 31 1 3.2810 -6.3427 0.8880 32 1 3.2808 -6.3419 -0.8919 33 1 1.8701 -8.2967 2.1579 34 1 0.8736 -10.5868 1.3475 35 1 1.2253 -9.7709 -3.2832 36 1 0.4337 -11.5910 -4.7376 37 1 -0.5740 -13.9122 -1.2995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192116795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:16 Heat of formation + Delta-G solvation = 13.315031 kcal Electronic energy + Delta-G solvation = -22712.574455 eV Core-core repulsion = 18833.037843 eV Total energy + Delta-G solvation = -3879.536612 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.78110 -49.49697 -41.73123 -39.27345 -34.33336 -33.67811 -31.67427 -30.94981 -30.84410 -30.00782 -27.65662 -25.23848 -23.99193 -23.38944 -21.65217 -21.26744 -19.95686 -18.83490 -18.42149 -17.47319 -16.76726 -16.51356 -16.31085 -15.96502 -15.79136 -15.45721 -15.18733 -14.94651 -14.51106 -14.44909 -14.24441 -13.99910 -13.53246 -13.29686 -13.12399 -13.02370 -12.59299 -12.29257 -12.07759 -11.96211 -11.52319 -11.01583 -10.90358 -10.70850 -10.41327 -10.18574 -9.73205 -9.65917 -9.56955 -9.27572 -9.07136 -8.41537 -8.33584 -7.14763 -6.05458 -4.10203 0.04983 0.33441 1.51331 1.88194 1.99451 2.83239 2.91931 3.17744 3.20813 3.30834 3.35595 3.37936 3.60794 3.83802 4.08070 4.28609 4.42095 4.48817 4.51810 4.82121 4.94656 5.16150 5.23847 5.29437 5.29955 5.41815 5.47286 5.52749 5.60160 5.78442 5.99313 5.99432 6.17433 6.32591 6.72268 6.72583 7.34969 7.56868 7.65554 7.90607 8.27515 8.94582 9.53517 11.05253 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027402 B = 0.001955 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.581036 B =14320.127482 C =14864.343521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.062 4.062 11 S -0.259 6.259 12 C -0.019 4.019 13 C 0.117 3.883 14 C -0.238 4.238 15 C 0.042 3.958 16 N -0.329 5.329 17 C 0.136 3.864 18 C -0.067 4.067 19 C -0.132 4.132 20 C 0.114 3.886 21 F -0.128 7.128 22 C -0.161 4.161 23 C 0.104 3.896 24 F -0.122 7.122 25 N -0.274 5.274 26 H 0.263 0.737 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.191 0.809 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 -28.883 -2.777 29.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.210 4.210 11 S -0.032 6.032 12 C -0.168 4.168 13 C -0.051 4.051 14 C -0.266 4.266 15 C -0.098 4.098 16 N -0.105 5.105 17 C 0.041 3.959 18 C -0.087 4.087 19 C -0.151 4.151 20 C 0.094 3.906 21 F -0.106 7.106 22 C -0.181 4.181 23 C 0.081 3.919 24 F -0.101 7.101 25 N -0.094 5.094 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.178 0.822 34 H 0.208 0.792 35 H 0.179 0.821 36 H 0.172 0.828 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.907 -29.078 -4.024 29.369 hybrid contribution 1.581 0.895 1.090 2.119 sum 2.489 -28.182 -2.934 28.444 Atomic orbital electron populations 1.69962 1.06077 1.26987 1.49866 1.25021 0.94906 0.99312 0.95062 0.86571 0.79507 0.82758 0.78662 1.20149 1.21193 1.20149 1.21054 0.92973 0.90213 1.51916 0.92448 1.18897 0.93420 0.89171 0.98598 1.23752 1.01560 0.92307 1.03340 1.87238 1.15661 1.02279 1.98065 1.21591 0.99341 0.89712 1.06169 1.21737 0.97346 0.95108 0.90958 1.21605 1.10095 0.94499 1.00424 1.23231 1.01503 1.01012 0.84019 1.45620 1.48264 1.12400 1.04191 1.17549 1.01311 0.86078 0.90951 1.20751 0.98159 1.00287 0.89502 1.21174 1.00172 0.91795 1.02000 1.17272 0.99463 0.86505 0.87368 1.91556 1.87153 1.59134 1.72771 1.20850 1.04744 1.00502 0.92036 1.16786 1.03843 0.93655 0.77589 1.91437 1.94299 1.95670 1.28679 1.77480 1.18651 0.91181 1.22125 0.92716 0.95513 0.95488 0.91138 0.91201 0.88105 0.88705 0.82237 0.79202 0.82119 0.82827 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.06 -1.27 5.88 37.16 0.22 -1.05 16 11 S -0.26 -4.83 21.72 -107.50 -2.33 -7.17 16 12 C -0.02 -0.26 6.50 36.01 0.23 -0.03 16 13 C 0.12 1.66 6.48 -82.37 -0.53 1.12 16 14 C -0.24 -2.90 10.74 -40.00 -0.43 -3.33 16 15 C 0.04 0.48 10.54 -17.11 -0.18 0.30 16 16 N -0.33 -4.14 3.80 -10.64 -0.04 -4.18 16 17 C 0.14 1.40 6.70 -83.48 -0.56 0.84 16 18 C -0.07 -0.58 9.66 -39.42 -0.38 -0.96 16 19 C -0.13 -0.88 10.02 -39.53 -0.40 -1.28 16 20 C 0.11 0.80 7.30 -39.41 -0.29 0.51 16 21 F -0.13 -0.95 17.26 2.25 0.04 -0.91 16 22 C -0.16 -1.09 10.00 -39.47 -0.39 -1.49 16 23 C 0.10 0.89 7.23 -39.26 -0.28 0.60 16 24 F -0.12 -1.04 13.94 2.25 0.03 -1.01 16 25 N -0.27 -4.01 11.87 33.68 0.40 -3.61 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.19 1.65 5.72 -52.49 -0.30 1.35 16 35 H 0.16 1.43 7.70 -52.48 -0.40 1.03 16 36 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -31.72 345.81 -8.57 -40.29 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -4.05 Total: -1.87 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -3.54 Total: -17.15 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 1.10 Total: -33.69 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.07 Total: -1.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -2.33 Total: -7.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.72 -8.57 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192116795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.601 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds