Wall clock time and date at job start Tue Mar 31 2020 14:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00286 * 2 1 4 4 H 1.48500 * 109.46753 * 240.00349 * 3 2 1 5 5 H 1.48497 * 109.46716 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46904 * 120.00395 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99640 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46835 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.81402 * 102.99877 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47049 * 179.97438 * 12 11 10 14 14 C 1.39884 * 125.88410 * 269.98081 * 13 12 11 15 15 C 1.35343 * 107.93232 * 180.02562 * 14 13 12 16 16 N 1.35184 * 107.71995 * 359.97438 * 15 14 13 17 17 C 1.40315 * 126.05610 * 179.97438 * 16 15 14 18 18 C 1.38783 * 120.05160 * 180.02562 * 17 16 15 19 19 C 1.38127 * 119.98342 * 180.02562 * 18 17 16 20 20 C 1.38501 * 120.08214 * 359.97303 * 19 18 17 21 21 F 1.35102 * 119.94794 * 180.02562 * 20 19 18 22 22 C 1.38450 * 120.10596 * 0.02562 * 20 19 18 23 23 C 1.38321 * 120.01261 * 359.72362 * 22 20 19 24 24 F 1.35096 * 120.04149 * 180.27199 * 23 22 20 25 25 N 1.30899 * 125.87454 * 90.02647 * 13 12 11 26 26 H 0.97004 * 119.99950 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47398 * 59.99989 * 9 7 2 28 28 H 1.08997 * 109.47122 * 299.99916 * 9 7 2 29 29 H 1.08998 * 109.47324 * 59.99714 * 10 9 7 30 30 H 1.08997 * 109.47010 * 299.99755 * 10 9 7 31 31 H 1.09001 * 109.47191 * 59.99892 * 12 11 10 32 32 H 1.08991 * 109.47104 * 299.99643 * 12 11 10 33 33 H 1.07998 * 126.03470 * 0.06363 * 14 13 12 34 34 H 1.08001 * 126.14104 * 180.02562 * 15 14 13 35 35 H 1.08003 * 120.01346 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.95652 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.99279 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 6 2.6647 -6.4702 -0.0020 13 6 2.0631 -7.8520 -0.0020 14 6 1.7365 -8.6041 1.1313 15 6 1.2227 -9.7847 0.7141 16 7 1.2238 -9.7791 -0.6377 17 6 0.7725 -10.8162 -1.4682 18 6 0.8320 -10.6776 -2.8478 19 6 0.3869 -11.6992 -3.6640 20 6 -0.1184 -12.8625 -3.1074 21 9 -0.5525 -13.8601 -3.9083 22 6 -0.1793 -13.0045 -1.7316 23 6 0.2701 -11.9862 -0.9103 24 9 0.2160 -12.1264 0.4322 25 7 1.7569 -8.5553 -1.0627 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5568 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6044 -0.8905 31 1 3.2810 -6.3427 0.8880 32 1 3.2808 -6.3419 -0.8919 33 1 1.8701 -8.2967 2.1579 34 1 0.8736 -10.5868 1.3475 35 1 1.2253 -9.7709 -3.2832 36 1 0.4337 -11.5910 -4.7376 37 1 -0.5740 -13.9122 -1.2995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192116795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:15 Heat of formation + Delta-G solvation = -2.509913 kcal Electronic energy + Delta-G solvation = -22713.260676 eV Core-core repulsion = 18833.037843 eV Total energy + Delta-G solvation = -3880.222833 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.43312 -50.08773 -42.64034 -39.93130 -35.75828 -35.19419 -32.88776 -32.34025 -31.74271 -30.95156 -28.57231 -27.25844 -24.64011 -24.17775 -23.14404 -22.46865 -20.99493 -19.51182 -19.16534 -18.65067 -18.12020 -17.47092 -17.14175 -16.89853 -16.55913 -16.50115 -16.30956 -16.07690 -15.73226 -15.62932 -15.20437 -14.95605 -14.92535 -14.48418 -14.11894 -14.00742 -13.73955 -13.54519 -13.21906 -13.09318 -12.87205 -12.70326 -12.47010 -12.13868 -11.86240 -11.68994 -11.60587 -11.04256 -10.78045 -10.58467 -10.32082 -10.23705 -9.15557 -8.63950 -8.21298 -6.34878 -0.66422 -0.25543 0.36784 0.99620 1.08555 1.42379 1.46067 1.53905 1.64192 1.94113 2.18566 2.42219 2.54155 2.95197 3.11917 3.13380 3.38933 3.57829 3.68439 3.88083 3.94467 4.27836 4.30689 4.37209 4.40982 4.42150 4.55872 4.62634 4.70762 4.81021 4.83876 4.90222 4.91133 5.33273 5.40466 5.45540 5.51721 5.75611 5.91101 6.12466 6.38346 6.79620 7.34473 8.90272 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027402 B = 0.001955 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.581036 B =14320.127482 C =14864.343521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.044 3.956 10 C -0.048 4.048 11 S -0.297 6.297 12 C 0.002 3.998 13 C 0.095 3.905 14 C -0.248 4.248 15 C 0.045 3.955 16 N -0.331 5.331 17 C 0.105 3.895 18 C -0.073 4.073 19 C -0.121 4.121 20 C 0.118 3.882 21 F -0.127 7.127 22 C -0.151 4.151 23 C 0.103 3.897 24 F -0.123 7.123 25 N -0.301 5.301 26 H 0.265 0.735 27 H -0.007 1.007 28 H -0.003 1.003 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.178 0.822 34 H 0.215 0.785 35 H 0.154 0.846 36 H 0.178 0.822 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -30.419 -2.817 30.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.005 3.995 10 C -0.196 4.196 11 S -0.070 6.070 12 C -0.147 4.147 13 C -0.072 4.072 14 C -0.277 4.277 15 C -0.096 4.096 16 N -0.107 5.107 17 C 0.011 3.989 18 C -0.093 4.093 19 C -0.141 4.141 20 C 0.098 3.902 21 F -0.105 7.105 22 C -0.171 4.171 23 C 0.081 3.919 24 F -0.101 7.101 25 N -0.122 5.122 26 H 0.074 0.926 27 H 0.012 0.988 28 H 0.015 0.985 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.144 0.856 32 H 0.120 0.880 33 H 0.196 0.804 34 H 0.231 0.769 35 H 0.171 0.829 36 H 0.195 0.805 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.096 -30.625 -4.076 30.966 hybrid contribution 1.140 1.126 1.025 1.902 sum 3.236 -29.499 -3.050 29.832 Atomic orbital electron populations 1.70116 1.08021 1.28081 1.51007 1.26055 0.95797 1.03632 0.94443 0.85384 0.78124 0.77465 0.79369 1.18966 1.21037 1.18818 1.21531 0.93800 0.91226 1.51480 0.91176 1.18674 0.93760 0.91500 0.95530 1.23376 1.00154 0.91677 1.04421 1.87310 1.18532 1.02980 1.98222 1.21573 0.97375 0.88020 1.07769 1.21786 0.98488 0.95182 0.91743 1.21883 1.10296 0.94600 1.00891 1.23674 1.00650 1.01377 0.83870 1.45800 1.47721 1.12209 1.04928 1.17914 1.03110 0.86380 0.91505 1.20772 0.98590 1.00676 0.89263 1.21368 0.98766 0.90926 1.02995 1.17340 0.98942 0.86416 0.87513 1.91568 1.87086 1.59103 1.72784 1.21064 1.03528 1.00687 0.91804 1.16835 1.03862 0.93449 0.77751 1.91424 1.94313 1.95616 1.28739 1.77382 1.19484 0.92358 1.23011 0.92625 0.98821 0.98458 0.89679 0.90323 0.85601 0.88019 0.80434 0.76857 0.82877 0.80507 0.79973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.04 2.36 4.98 29.85 0.15 2.51 16 10 C -0.05 -2.00 5.88 71.98 0.42 -1.57 16 11 S -0.30 -11.20 21.72 -56.49 -1.23 -12.43 16 12 C 0.00 0.05 6.50 71.24 0.46 0.51 16 13 C 0.10 2.65 6.48 43.10 0.28 2.93 16 14 C -0.25 -5.81 10.74 22.00 0.24 -5.57 16 15 C 0.04 0.98 10.54 83.51 0.88 1.86 16 16 N -0.33 -8.15 3.80 -187.57 -0.71 -8.87 16 17 C 0.10 2.07 6.70 38.10 0.26 2.32 16 18 C -0.07 -1.22 9.66 22.37 0.22 -1.00 16 19 C -0.12 -1.40 10.02 22.31 0.22 -1.18 16 20 C 0.12 1.38 7.30 22.38 0.16 1.54 16 21 F -0.13 -1.57 17.26 44.97 0.78 -0.80 16 22 C -0.15 -1.69 10.00 22.34 0.22 -1.46 16 23 C 0.10 1.60 7.23 22.48 0.16 1.76 16 24 F -0.12 -1.86 13.94 44.97 0.63 -1.24 16 25 N -0.30 -8.78 11.87 -47.34 -0.56 -9.34 16 26 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 29 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.08 3.07 8.14 -2.39 -0.02 3.06 16 31 H 0.13 2.80 8.14 -2.39 -0.02 2.79 16 32 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.22 3.36 5.72 -2.91 -0.02 3.34 16 35 H 0.15 2.76 7.70 -2.91 -0.02 2.74 16 36 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -70.03 345.81 6.68 -63.34 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.10 Total: 7.69 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.37 Total: -27.14 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -0.99 Total: -75.17 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 1.40 Total: -2.03 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -11.20 SS G_CDS: -1.23 Total: -12.43 kcal Total: -70.03 6.68 -63.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192116795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.833 kcal (2) G-P(sol) polarization free energy of solvation -70.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds