Wall clock time and date at job start Tue Mar 31 2020 13:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31601 * 122.22649 * 2 1 4 4 C 1.29944 * 117.13228 * 180.24960 * 3 2 1 5 5 N 1.38895 * 125.36451 * 179.76858 * 4 3 2 6 6 C 1.34777 * 120.00480 * 179.44516 * 5 4 3 7 7 O 1.21286 * 119.99444 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00076 * 180.02562 * 6 5 4 9 9 H 1.08998 * 115.52754 * 34.50386 * 8 6 5 10 10 C 1.53004 * 117.45752 * 180.02562 * 8 6 5 11 11 H 1.08996 * 119.29905 * 356.29299 * 10 8 6 12 12 C 1.54263 * 118.19448 * 202.15066 * 10 8 6 13 13 C 1.54893 * 104.19775 * 272.20934 * 12 10 8 14 14 C 1.54895 * 102.74623 * 37.94407 * 13 12 10 15 15 C 1.53000 * 117.46148 * 249.04411 * 8 6 5 16 16 H 1.09001 * 119.29500 * 3.70917 * 15 8 6 17 17 S 1.76142 * 109.27341 * 359.51151 * 4 3 2 18 18 C 1.34649 * 122.23457 * 179.70988 * 2 1 3 19 19 S 1.76202 * 125.92792 * 0.02562 * 18 2 1 20 20 C 1.76204 * 99.99940 * 180.02562 * 19 18 2 21 21 H 1.07999 * 119.99812 * 0.02562 * 20 19 18 22 22 C 1.38428 * 120.00104 * 180.02562 * 20 19 18 23 23 N 1.31807 * 120.00335 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00051 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47382 * 90.00176 * 24 22 20 26 26 H 1.48502 * 109.47240 * 210.00317 * 24 22 20 27 27 H 1.48501 * 109.46810 * 330.00180 * 24 22 20 28 28 H 1.09000 * 109.46929 * 270.28540 * 1 2 3 29 29 H 1.08996 * 109.47455 * 30.29090 * 1 2 3 30 30 H 1.09002 * 109.46684 * 150.29258 * 1 2 3 31 31 H 0.97005 * 119.99671 * 359.72669 * 5 4 3 32 32 H 1.08992 * 110.49256 * 30.89065 * 12 10 8 33 33 H 1.09004 * 110.48469 * 153.40765 * 12 10 8 34 34 H 1.09000 * 110.75996 * 156.25665 * 13 12 10 35 35 H 1.09005 * 110.75754 * 279.45193 * 13 12 10 36 36 H 1.08999 * 110.48317 * 80.73463 * 14 13 12 37 37 H 1.08994 * 110.48617 * 203.37631 * 14 13 12 38 38 H 0.97000 * 120.00657 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1133 0.0000 4 6 3.5031 0.9979 -0.0050 5 7 4.4043 2.0547 -0.0105 6 6 5.7297 1.8102 -0.0041 7 8 6.1354 0.6673 0.0059 8 6 6.7075 2.9569 -0.0094 9 1 6.3936 3.8444 0.5400 10 6 8.1983 2.6129 -0.0024 11 1 8.5046 1.5691 0.0676 12 6 9.1901 3.6797 0.5056 13 6 9.5218 4.5198 -0.7528 14 6 8.1600 4.5868 -1.4877 15 6 7.5391 3.1692 -1.2761 16 1 7.3596 2.5352 -2.1444 17 16 3.9346 -0.7098 0.0036 18 6 2.2252 -1.1389 0.0058 19 16 1.5698 -2.7745 0.0134 20 6 3.0667 -3.7040 0.0192 21 1 4.0188 -3.1942 0.0179 22 6 3.0224 -5.0875 0.0256 23 7 4.1421 -5.7828 0.0304 24 14 1.3755 -5.9692 0.0287 25 1 0.9399 -6.2094 -1.3705 26 1 1.5110 -7.2686 0.7348 27 1 0.3665 -5.1307 0.7242 28 1 -0.3633 0.0051 1.0277 29 1 -0.3634 0.8873 -0.5183 30 1 -0.3633 -0.8926 -0.5093 31 1 4.0798 2.9689 -0.0147 32 1 8.7229 4.3028 1.2680 33 1 10.0901 3.2072 0.8992 34 1 9.8593 5.5178 -0.4731 35 1 10.2705 4.0181 -1.3659 36 1 7.5262 5.3564 -1.0471 37 1 8.3090 4.7764 -2.5506 38 1 4.1111 -6.7523 0.0353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248372075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:04 Heat of formation + Delta-G solvation = 21.871522 kcal Electronic energy + Delta-G solvation = -21695.199464 eV Core-core repulsion = 18369.874276 eV Total energy + Delta-G solvation = -3325.325188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73249 -39.10533 -38.30646 -34.77300 -32.75158 -32.17811 -30.56731 -28.48764 -27.19183 -25.90051 -25.48964 -22.75814 -21.19124 -20.79067 -19.99484 -19.62919 -18.18441 -17.70337 -16.94938 -15.98826 -15.61310 -15.53818 -15.23383 -15.01021 -14.32488 -14.01186 -13.87930 -13.46668 -13.22088 -13.14350 -12.76947 -12.20137 -12.02392 -11.84373 -11.62577 -11.56879 -11.47289 -11.32932 -11.30748 -11.19780 -10.79333 -10.62147 -10.45238 -10.14249 -10.11645 -9.86073 -9.45960 -9.16546 -8.85047 -8.77237 -7.88625 -6.72454 -6.55118 -4.28413 1.29648 1.79784 2.28201 2.45522 2.74176 2.86819 3.10558 3.20280 3.33625 3.37768 3.59127 4.03388 4.13846 4.34640 4.38367 4.49045 4.75231 4.80511 4.84716 4.88277 5.03628 5.09015 5.13999 5.24579 5.37599 5.50389 5.67229 5.74352 5.75832 5.86208 5.95482 6.04780 6.09509 6.12617 6.34633 6.40751 6.87959 7.14041 7.67728 7.96864 8.24418 8.42832 8.84545 10.52772 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.003140 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.886556 B = 8914.346336 C =10143.055772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.481 5.481 4 C 0.193 3.807 5 N -0.612 5.612 6 C 0.535 3.465 7 O -0.500 6.500 8 C -0.159 4.159 9 H 0.126 0.874 10 C -0.127 4.127 11 H 0.126 0.874 12 C -0.097 4.097 13 C -0.124 4.124 14 C -0.095 4.095 15 C -0.136 4.136 16 H 0.121 0.879 17 S 0.231 5.769 18 C -0.239 4.239 19 S 0.054 5.946 20 C -0.544 4.544 21 H 0.105 0.895 22 C 0.102 3.898 23 N -0.857 5.857 24 Si 0.852 3.148 25 H -0.261 1.261 26 H -0.265 1.265 27 H -0.236 1.236 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.416 0.584 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 19.796 -0.919 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.203 5.203 4 C -0.177 4.177 5 N -0.261 5.261 6 C 0.321 3.679 7 O -0.374 6.374 8 C -0.180 4.180 9 H 0.143 0.857 10 C -0.146 4.146 11 H 0.144 0.856 12 C -0.134 4.134 13 C -0.161 4.161 14 C -0.132 4.132 15 C -0.155 4.155 16 H 0.139 0.861 17 S 0.477 5.523 18 C -0.475 4.475 19 S 0.301 5.699 20 C -0.693 4.693 21 H 0.122 0.878 22 C -0.110 4.110 23 N -0.491 5.491 24 Si 0.676 3.324 25 H -0.186 1.186 26 H -0.190 1.190 27 H -0.160 1.160 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.253 0.747 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.317 18.190 -0.903 18.973 hybrid contribution -0.403 0.341 0.044 0.530 sum 4.914 18.531 -0.859 19.191 Atomic orbital electron populations 1.20146 0.87990 1.02205 1.01919 1.19112 0.96787 0.84595 1.10566 1.65871 1.02873 1.32175 1.19399 1.23994 0.90020 0.93454 1.10245 1.42353 1.04290 1.08093 1.71315 1.19848 0.81424 0.90253 0.76402 1.90724 1.77034 1.22254 1.47369 1.22191 0.92414 0.98659 1.04750 0.85651 1.23297 0.89666 1.01173 1.00463 0.85624 1.22013 0.98120 0.95757 0.97532 1.22688 0.97186 0.99949 0.96320 1.22343 0.95788 0.93999 1.01073 1.23756 1.01192 0.98809 0.91739 0.86139 1.86185 1.00591 0.94395 1.71144 1.28164 1.01709 1.04488 1.13188 1.82452 1.13475 0.89171 1.84809 1.22659 0.92388 0.94487 1.59760 0.87783 1.24741 0.97379 0.96227 0.92623 1.70007 1.26467 1.07670 1.44934 0.86814 0.83891 0.81376 0.80355 1.18564 1.18978 1.15973 0.91703 0.91712 0.91087 0.74699 0.91132 0.90624 0.91096 0.90994 0.90984 0.90805 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.01 0.36 -0.70 16 2 C 0.03 0.64 6.73 -83.96 -0.57 0.08 16 3 N -0.48 -9.53 10.55 -9.78 -0.10 -9.64 16 4 C 0.19 3.72 8.40 -87.19 -0.73 2.99 16 5 N -0.61 -9.00 5.40 -11.78 -0.06 -9.07 16 6 C 0.54 7.82 7.57 -10.99 -0.08 7.74 16 7 O -0.50 -9.43 13.84 5.55 0.08 -9.35 16 8 C -0.16 -1.60 5.70 -91.77 -0.52 -2.12 16 9 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 10 C -0.13 -1.25 6.34 -89.52 -0.57 -1.82 16 11 H 0.13 1.48 7.78 -51.93 -0.40 1.08 16 12 C -0.10 -0.69 6.62 -25.07 -0.17 -0.86 16 13 C -0.12 -0.75 6.91 -24.73 -0.17 -0.92 16 14 C -0.09 -0.61 6.66 -24.01 -0.16 -0.77 16 15 C -0.14 -1.23 6.81 -88.47 -0.60 -1.84 16 16 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 17 S 0.23 5.21 18.35 -107.50 -1.97 3.24 16 18 C -0.24 -5.48 6.67 29.46 0.20 -5.28 16 19 S 0.05 1.29 18.70 -107.50 -2.01 -0.72 16 20 C -0.54 -15.27 9.80 30.80 0.30 -14.97 16 21 H 0.10 3.13 6.21 -52.49 -0.33 2.81 16 22 C 0.10 2.83 5.49 -17.49 -0.10 2.73 16 23 N -0.86 -24.89 13.98 55.47 0.78 -24.11 16 24 Si 0.85 19.77 27.73 -169.99 -4.71 15.06 16 25 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 27 H -0.24 -5.23 6.73 56.52 0.38 -4.85 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.17 7.37 -51.93 -0.38 0.78 16 31 H 0.42 4.60 8.82 -40.82 -0.36 4.24 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.28 7.36 8.32 -40.82 -0.34 7.02 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -32.18 343.16 -10.50 -42.69 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.86 Total: 2.47 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.81 Total: -15.74 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.61 Total: -42.81 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.06 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -3.98 Total: 2.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.18 -10.50 -42.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248372075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.559 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds