Wall clock time and date at job start Tue Mar 31 2020 13:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31601 * 122.22649 * 2 1 4 4 C 1.29944 * 117.13228 * 180.24960 * 3 2 1 5 5 N 1.38895 * 125.36451 * 179.76858 * 4 3 2 6 6 C 1.34777 * 120.00480 * 179.44516 * 5 4 3 7 7 O 1.21286 * 119.99444 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00076 * 180.02562 * 6 5 4 9 9 H 1.08998 * 115.52754 * 34.50386 * 8 6 5 10 10 C 1.53004 * 117.45752 * 180.02562 * 8 6 5 11 11 H 1.08996 * 119.29905 * 356.29299 * 10 8 6 12 12 C 1.54263 * 118.19448 * 202.15066 * 10 8 6 13 13 C 1.54893 * 104.19775 * 272.20934 * 12 10 8 14 14 C 1.54895 * 102.74623 * 37.94407 * 13 12 10 15 15 C 1.53000 * 117.46148 * 249.04411 * 8 6 5 16 16 H 1.09001 * 119.29500 * 3.70917 * 15 8 6 17 17 S 1.76142 * 109.27341 * 359.51151 * 4 3 2 18 18 C 1.34649 * 122.23457 * 179.70988 * 2 1 3 19 19 S 1.76202 * 125.92792 * 0.02562 * 18 2 1 20 20 C 1.76204 * 99.99940 * 180.02562 * 19 18 2 21 21 H 1.07999 * 119.99812 * 0.02562 * 20 19 18 22 22 C 1.38428 * 120.00104 * 180.02562 * 20 19 18 23 23 N 1.31807 * 120.00335 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00051 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47382 * 90.00176 * 24 22 20 26 26 H 1.48502 * 109.47240 * 210.00317 * 24 22 20 27 27 H 1.48501 * 109.46810 * 330.00180 * 24 22 20 28 28 H 1.09000 * 109.46929 * 270.28540 * 1 2 3 29 29 H 1.08996 * 109.47455 * 30.29090 * 1 2 3 30 30 H 1.09002 * 109.46684 * 150.29258 * 1 2 3 31 31 H 0.97005 * 119.99671 * 359.72669 * 5 4 3 32 32 H 1.08992 * 110.49256 * 30.89065 * 12 10 8 33 33 H 1.09004 * 110.48469 * 153.40765 * 12 10 8 34 34 H 1.09000 * 110.75996 * 156.25665 * 13 12 10 35 35 H 1.09005 * 110.75754 * 279.45193 * 13 12 10 36 36 H 1.08999 * 110.48317 * 80.73463 * 14 13 12 37 37 H 1.08994 * 110.48617 * 203.37631 * 14 13 12 38 38 H 0.97000 * 120.00657 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1133 0.0000 4 6 3.5031 0.9979 -0.0050 5 7 4.4043 2.0547 -0.0105 6 6 5.7297 1.8102 -0.0041 7 8 6.1354 0.6673 0.0059 8 6 6.7075 2.9569 -0.0094 9 1 6.3936 3.8444 0.5400 10 6 8.1983 2.6129 -0.0024 11 1 8.5046 1.5691 0.0676 12 6 9.1901 3.6797 0.5056 13 6 9.5218 4.5198 -0.7528 14 6 8.1600 4.5868 -1.4877 15 6 7.5391 3.1692 -1.2761 16 1 7.3596 2.5352 -2.1444 17 16 3.9346 -0.7098 0.0036 18 6 2.2252 -1.1389 0.0058 19 16 1.5698 -2.7745 0.0134 20 6 3.0667 -3.7040 0.0192 21 1 4.0188 -3.1942 0.0179 22 6 3.0224 -5.0875 0.0256 23 7 4.1421 -5.7828 0.0304 24 14 1.3755 -5.9692 0.0287 25 1 0.9399 -6.2094 -1.3705 26 1 1.5110 -7.2686 0.7348 27 1 0.3665 -5.1307 0.7242 28 1 -0.3633 0.0051 1.0277 29 1 -0.3634 0.8873 -0.5183 30 1 -0.3633 -0.8926 -0.5093 31 1 4.0798 2.9689 -0.0147 32 1 8.7229 4.3028 1.2680 33 1 10.0901 3.2072 0.8992 34 1 9.8593 5.5178 -0.4731 35 1 10.2705 4.0181 -1.3659 36 1 7.5262 5.3564 -1.0471 37 1 8.3090 4.7764 -2.5506 38 1 4.1111 -6.7523 0.0353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248372075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:04 Heat of formation + Delta-G solvation = 1.978131 kcal Electronic energy + Delta-G solvation = -21696.062106 eV Core-core repulsion = 18369.874276 eV Total energy + Delta-G solvation = -3326.187830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.86174 -40.47962 -39.49717 -36.21398 -34.84167 -32.94735 -31.98800 -29.06316 -28.83621 -27.93099 -26.70536 -24.00717 -22.46434 -21.61789 -21.05152 -20.70592 -19.81350 -19.24519 -18.36360 -17.51098 -17.26432 -16.81797 -16.80657 -15.84355 -15.80035 -15.39669 -15.05517 -14.94641 -14.52054 -14.03677 -13.89288 -13.58330 -13.50627 -13.41377 -13.17739 -13.12685 -12.67356 -12.32067 -12.21752 -12.17660 -11.98981 -11.94584 -11.69424 -11.43027 -11.32254 -11.20940 -10.92654 -10.74798 -10.62495 -10.59329 -9.65568 -8.63331 -8.55775 -6.36711 -0.33962 0.11526 0.73153 1.02368 1.03421 1.27820 1.38115 1.45062 1.62031 1.89937 2.12771 2.48598 2.59518 2.75465 3.24240 3.58936 3.66921 3.67645 3.93239 4.13233 4.22745 4.34449 4.46018 4.48914 4.61585 4.67564 4.82581 4.83475 4.90865 4.98615 5.01095 5.14564 5.22881 5.23806 5.25436 5.41753 5.51156 5.58958 5.89256 6.05798 6.70754 6.74773 6.78813 8.49510 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.003140 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.886556 B = 8914.346336 C =10143.055772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.483 5.483 4 C 0.232 3.768 5 N -0.598 5.598 6 C 0.532 3.468 7 O -0.543 6.543 8 C -0.153 4.153 9 H 0.165 0.835 10 C -0.141 4.141 11 H 0.094 0.906 12 C -0.091 4.091 13 C -0.120 4.120 14 C -0.087 4.087 15 C -0.130 4.130 16 H 0.103 0.897 17 S 0.160 5.840 18 C -0.276 4.276 19 S 0.063 5.937 20 C -0.568 4.568 21 H 0.066 0.934 22 C 0.048 3.952 23 N -0.908 5.908 24 Si 0.915 3.085 25 H -0.252 1.252 26 H -0.253 1.253 27 H -0.219 1.219 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.438 0.562 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 23.443 -0.827 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 N -0.206 5.206 4 C -0.141 4.141 5 N -0.249 5.249 6 C 0.321 3.679 7 O -0.419 6.419 8 C -0.174 4.174 9 H 0.182 0.818 10 C -0.160 4.160 11 H 0.112 0.888 12 C -0.129 4.129 13 C -0.158 4.158 14 C -0.124 4.124 15 C -0.149 4.149 16 H 0.121 0.879 17 S 0.406 5.594 18 C -0.511 4.511 19 S 0.308 5.692 20 C -0.716 4.716 21 H 0.084 0.916 22 C -0.159 4.159 23 N -0.543 5.543 24 Si 0.734 3.266 25 H -0.176 1.176 26 H -0.177 1.177 27 H -0.142 1.142 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.280 0.720 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.886 21.913 -0.812 22.270 hybrid contribution 0.223 -0.474 -0.006 0.524 sum 4.109 21.440 -0.818 21.845 Atomic orbital electron populations 1.20328 0.84944 1.03605 1.03547 1.19869 0.98727 0.83867 1.06403 1.66101 1.02438 1.31254 1.20776 1.24265 0.90402 0.93150 1.06252 1.42513 1.03820 1.08045 1.70545 1.20877 0.81648 0.90960 0.74444 1.90732 1.77584 1.24715 1.48917 1.22274 0.91087 0.97714 1.06317 0.81809 1.23365 0.90155 1.00685 1.01811 0.88793 1.22042 0.97303 0.95064 0.98470 1.22698 0.96879 1.00741 0.95442 1.22394 0.95886 0.92164 1.01976 1.23884 0.99911 1.00505 0.90585 0.87856 1.86575 1.02321 0.97914 1.72632 1.28114 1.01397 1.04622 1.16954 1.81858 1.10716 0.89308 1.87285 1.22842 0.93237 0.95480 1.60074 0.91604 1.25746 1.01458 0.96837 0.91849 1.70116 1.29138 1.08282 1.46802 0.85883 0.79147 0.80501 0.81073 1.17602 1.17721 1.14177 0.89805 0.89220 0.90746 0.71987 0.89633 0.90610 0.88949 0.91421 0.89037 0.89953 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.99 10.02 71.24 0.71 -1.27 16 2 C 0.05 2.09 6.73 41.77 0.28 2.37 16 3 N -0.48 -18.22 10.55 -184.87 -1.95 -20.17 16 4 C 0.23 8.75 8.40 179.15 1.50 10.25 16 5 N -0.60 -16.62 5.40 -309.57 -1.67 -18.29 16 6 C 0.53 15.31 7.57 87.66 0.66 15.98 16 7 O -0.54 -21.40 13.84 -3.05 -0.04 -21.44 16 8 C -0.15 -2.78 5.70 -11.54 -0.07 -2.84 16 9 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 10 C -0.14 -2.68 6.34 -10.08 -0.06 -2.74 16 11 H 0.09 2.38 7.78 -2.39 -0.02 2.37 16 12 C -0.09 -1.10 6.62 31.67 0.21 -0.89 16 13 C -0.12 -1.07 6.91 31.89 0.22 -0.85 16 14 C -0.09 -0.83 6.66 32.35 0.22 -0.61 16 15 C -0.13 -2.15 6.81 -9.40 -0.06 -2.21 16 16 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 17 S 0.16 7.53 18.35 -56.49 -1.04 6.49 16 18 C -0.28 -12.81 6.67 67.00 0.45 -12.36 16 19 S 0.06 3.09 18.70 -56.49 -1.06 2.03 16 20 C -0.57 -33.51 9.80 67.87 0.67 -32.84 16 21 H 0.07 4.29 6.21 -2.91 -0.02 4.27 16 22 C 0.05 2.76 5.49 84.74 0.47 3.23 16 23 N -0.91 -55.32 13.98 21.59 0.30 -55.01 16 24 Si 0.92 41.22 27.73 68.60 1.90 43.13 16 25 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 27 H -0.22 -9.15 6.73 99.48 0.67 -8.48 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 2.26 7.37 -2.39 -0.02 2.24 16 31 H 0.44 8.30 8.82 -92.70 -0.82 7.48 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.28 15.66 8.32 -92.71 -0.77 14.89 16 Total: -1.00 -75.08 343.16 1.89 -73.20 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.25 Total: 14.87 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 5.19 Total: -24.80 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -3.32 Total: -93.47 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.04 Total: -21.44 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.90 Total: 43.13 kcal Atomic # 16 Polarization: 10.62 SS G_CDS: -2.09 Total: 8.52 kcal Total: -75.08 1.89 -73.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248372075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.176 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds