Wall clock time and date at job start Tue Mar 31 2020 14:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47268 * 266.71785 * 3 2 1 5 5 C 1.36709 * 120.00176 * 264.67748 * 4 3 2 6 6 H 1.07997 * 120.00308 * 207.58613 * 5 4 3 7 7 C 1.39128 * 119.99856 * 27.57960 * 5 4 3 8 8 N 1.31322 * 120.00201 * 356.76234 * 7 5 4 9 9 Si 1.86801 * 119.99739 * 176.75742 * 7 5 4 10 10 H 1.48507 * 109.46992 * 90.00492 * 9 7 5 11 11 H 1.48503 * 109.47123 * 209.99965 * 9 7 5 12 12 H 1.48494 * 109.47279 * 330.00179 * 9 7 5 13 13 C 1.34776 * 119.99893 * 84.67351 * 4 3 2 14 14 O 1.21755 * 120.00250 * 180.02562 * 13 4 3 15 15 C 1.46232 * 119.99956 * 0.27767 * 13 4 3 16 16 C 1.34979 * 119.99904 * 172.54793 * 15 13 4 17 17 C 1.47144 * 119.99872 * 349.95625 * 16 15 13 18 18 C 1.39901 * 120.16636 * 135.66060 * 17 16 15 19 19 C 1.37862 * 119.81799 * 179.97438 * 18 17 16 20 20 C 1.38437 * 120.17380 * 359.97438 * 19 18 17 21 21 C 1.38388 * 120.35393 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.91600 * 180.02562 * 21 20 19 23 23 F 1.39906 * 109.46999 * 359.97438 * 22 21 20 24 24 F 1.39898 * 109.47697 * 120.00034 * 22 21 20 25 25 F 1.39900 * 109.47063 * 240.00470 * 22 21 20 26 26 C 1.37902 * 120.17455 * 359.78797 * 21 20 19 27 27 H 1.09002 * 109.46852 * 146.72044 * 3 2 1 28 28 H 1.09001 * 109.47420 * 26.71892 * 3 2 1 29 29 H 0.97004 * 119.99947 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.00196 * 352.54121 * 15 13 4 31 31 H 1.08004 * 119.99611 * 169.95682 * 16 15 13 32 32 H 1.07991 * 120.09454 * 359.95894 * 18 17 16 33 33 H 1.07993 * 119.91025 * 180.02562 * 19 18 17 34 34 H 1.07996 * 119.82452 * 180.02562 * 20 19 18 35 35 H 1.08000 * 120.09206 * 180.25088 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 0.0800 1.3790 5 6 3.4273 1.2918 1.9184 6 1 4.1678 1.3499 2.7023 7 6 2.8101 2.4503 1.4572 8 7 1.9568 2.3878 0.4609 9 14 3.1951 4.0947 2.2554 10 1 4.3440 4.7265 1.5581 11 1 2.0083 4.9821 2.1582 12 1 3.5390 3.8829 3.6844 13 6 3.2194 -1.0418 2.1158 14 8 3.6248 -0.9759 3.2620 15 6 2.8711 -2.3387 1.5369 16 6 3.1345 -3.4742 2.2176 17 6 3.9646 -3.4285 3.4316 18 6 3.5815 -4.1419 4.5725 19 6 4.3650 -4.0944 5.7059 20 6 5.5281 -3.3438 5.7168 21 6 5.9144 -2.6362 4.5919 22 6 7.1828 -1.8228 4.6145 23 9 7.7890 -1.9391 5.8700 24 9 8.0566 -2.2938 3.6288 25 9 6.8799 -0.4797 4.3661 26 6 5.1442 -2.6774 3.4488 27 1 2.9709 0.8600 -0.5639 28 1 2.9718 -0.9171 -0.4620 29 1 1.5263 3.1955 0.1397 30 1 2.4031 -2.3880 0.5648 31 1 2.7358 -4.4163 1.8710 32 1 2.6746 -4.7280 4.5655 33 1 4.0709 -4.6449 6.5872 34 1 6.1378 -3.3109 6.6075 35 1 5.4490 -2.1279 2.5704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254886076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:52 Heat of formation + Delta-G solvation = -88.087506 kcal Electronic energy + Delta-G solvation = -27350.292793 eV Core-core repulsion = 22900.145861 eV Total energy + Delta-G solvation = -4450.146932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.83558 -47.40797 -47.22362 -39.59085 -38.44465 -35.93546 -34.54205 -33.40225 -31.99443 -31.55545 -29.45741 -27.56430 -25.73075 -25.39490 -23.38338 -21.78700 -21.07061 -18.76027 -18.15625 -18.05317 -17.99151 -17.65366 -16.49752 -16.37242 -16.05880 -14.97548 -14.86915 -14.34293 -14.20245 -14.12424 -13.95278 -13.76336 -13.66355 -13.43959 -13.43140 -13.22333 -13.07946 -12.92386 -12.49146 -12.34819 -12.16863 -11.86268 -11.66542 -11.34796 -11.25099 -11.00250 -10.99485 -10.63124 -10.52442 -10.46262 -9.66353 -9.28791 -8.96458 -8.68018 -8.10036 -7.69801 -6.61089 -4.16774 1.00663 1.44321 2.15619 3.00063 3.09163 3.17092 3.22637 3.61349 3.85472 3.90627 4.05177 4.06082 4.18225 4.35002 4.74444 4.79119 4.86190 4.97331 5.09427 5.18125 5.23840 5.41060 5.47271 5.70082 5.74685 5.91186 6.06564 6.16216 6.35690 6.46483 6.50265 6.57923 6.68216 6.82344 7.08230 7.31834 7.87300 8.19679 8.70500 8.90514 9.04979 9.65684 10.41446 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.004993 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.654143 B = 5606.936213 C = 7049.620477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.251 3.749 3 C 0.217 3.783 4 N -0.427 5.427 5 C -0.298 4.298 6 H 0.109 0.891 7 C 0.034 3.966 8 N -0.881 5.881 9 Si 0.933 3.067 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.464 3.536 14 O -0.560 6.560 15 C -0.171 4.171 16 C -0.080 4.080 17 C -0.047 4.047 18 C -0.080 4.080 19 C -0.139 4.139 20 C -0.076 4.076 21 C -0.197 4.197 22 C 0.508 3.492 23 F -0.185 7.185 24 F -0.184 7.184 25 F -0.168 7.168 26 C 0.026 3.974 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.277 0.723 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.659 -11.422 2.607 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.067 4.067 3 C 0.090 3.910 4 N -0.144 5.144 5 C -0.426 4.426 6 H 0.126 0.874 7 C -0.170 4.170 8 N -0.520 5.520 9 Si 0.759 3.241 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.256 3.744 14 O -0.444 6.444 15 C -0.193 4.193 16 C -0.101 4.101 17 C -0.047 4.047 18 C -0.098 4.098 19 C -0.157 4.157 20 C -0.094 4.094 21 C -0.199 4.199 22 C 0.454 3.546 23 F -0.167 7.167 24 F -0.165 7.165 25 F -0.149 7.149 26 C 0.007 3.993 27 H 0.156 0.844 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.108 -11.135 3.040 13.059 hybrid contribution 0.397 1.344 0.176 1.412 sum 6.505 -9.791 3.216 12.187 Atomic orbital electron populations 1.80904 1.13658 1.12868 1.08505 1.29269 0.95334 0.89689 0.92436 1.18937 0.81558 1.03522 0.87009 1.43587 1.54766 1.06809 1.09271 1.19770 1.21016 0.81662 1.20122 0.87352 1.25487 0.94727 1.00665 0.96075 1.69615 1.27257 1.30400 1.24737 0.85796 0.77926 0.80306 0.80080 1.19967 1.20773 1.19065 1.18211 0.85429 0.84366 0.86417 1.90732 1.50373 1.85892 1.17442 1.23364 1.02444 0.93617 0.99833 1.22027 0.96699 0.97632 0.93708 1.18723 0.94260 0.97310 0.94402 1.21342 0.98581 0.97515 0.92394 1.20812 0.95241 1.01223 0.98456 1.20867 0.96841 0.95182 0.96517 1.19666 0.96744 1.05148 0.98306 1.18361 0.84269 0.78911 0.73018 1.93116 1.85236 1.95987 1.42348 1.93176 1.72066 1.88452 1.62821 1.93281 1.93020 1.34757 1.93842 1.20811 0.91378 0.90564 0.96508 0.84436 0.90139 0.91253 0.85836 0.85259 0.85776 0.85673 0.85447 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.14 18.54 42.15 0.78 -10.36 16 2 C 0.25 5.37 13.11 -20.76 -0.27 5.10 16 3 C 0.22 4.12 4.78 -6.82 -0.03 4.09 16 4 N -0.43 -9.52 2.59 -119.59 -0.31 -9.83 16 5 C -0.30 -7.39 9.19 -15.05 -0.14 -7.53 16 6 H 0.11 2.84 7.47 -52.49 -0.39 2.44 16 7 C 0.03 0.83 5.33 -17.44 -0.09 0.73 16 8 N -0.88 -21.37 8.75 55.51 0.49 -20.89 16 9 Si 0.93 19.77 29.55 -169.99 -5.02 14.75 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.46 9.93 6.56 -13.05 -0.09 9.84 16 14 O -0.56 -13.40 11.88 5.14 0.06 -13.34 16 15 C -0.17 -2.84 8.95 -37.53 -0.34 -3.18 16 16 C -0.08 -1.15 9.81 -37.13 -0.36 -1.52 16 17 C -0.05 -0.74 4.52 -105.06 -0.48 -1.22 16 18 C -0.08 -1.10 9.80 -39.10 -0.38 -1.48 16 19 C -0.14 -1.80 10.03 -39.65 -0.40 -2.19 16 20 C -0.08 -1.07 9.43 -39.45 -0.37 -1.44 16 21 C -0.20 -3.22 5.37 -104.69 -0.56 -3.78 16 22 C 0.51 8.23 3.31 36.00 0.12 8.35 16 23 F -0.19 -2.76 15.96 2.25 0.04 -2.72 16 24 F -0.18 -2.85 17.23 2.25 0.04 -2.81 16 25 F -0.17 -3.14 17.24 2.25 0.04 -3.10 16 26 C 0.03 0.45 6.14 -39.10 -0.24 0.21 16 27 H 0.14 2.72 6.45 -51.93 -0.33 2.38 16 28 H 0.08 1.16 6.51 -51.93 -0.34 0.82 16 29 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.12 1.75 6.25 -52.48 -0.33 1.42 16 31 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.13 1.54 7.14 -52.49 -0.37 1.16 16 35 H 0.13 2.28 7.06 -52.49 -0.37 1.91 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -29.43 322.76 -5.20 -34.63 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -2.54 Total: 2.82 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -3.63 Total: 5.99 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.96 Total: -41.08 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.06 Total: -13.34 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 0.11 Total: -8.63 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.43 -5.20 -34.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254886076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.455 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds