Wall clock time and date at job start Tue Mar 31 2020 14:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47268 * 266.71785 * 3 2 1 5 5 C 1.36709 * 120.00176 * 264.67748 * 4 3 2 6 6 H 1.07997 * 120.00308 * 207.58613 * 5 4 3 7 7 C 1.39128 * 119.99856 * 27.57960 * 5 4 3 8 8 N 1.31322 * 120.00201 * 356.76234 * 7 5 4 9 9 Si 1.86801 * 119.99739 * 176.75742 * 7 5 4 10 10 H 1.48507 * 109.46992 * 90.00492 * 9 7 5 11 11 H 1.48503 * 109.47123 * 209.99965 * 9 7 5 12 12 H 1.48494 * 109.47279 * 330.00179 * 9 7 5 13 13 C 1.34776 * 119.99893 * 84.67351 * 4 3 2 14 14 O 1.21755 * 120.00250 * 180.02562 * 13 4 3 15 15 C 1.46232 * 119.99956 * 0.27767 * 13 4 3 16 16 C 1.34979 * 119.99904 * 172.54793 * 15 13 4 17 17 C 1.47144 * 119.99872 * 349.95625 * 16 15 13 18 18 C 1.39901 * 120.16636 * 135.66060 * 17 16 15 19 19 C 1.37862 * 119.81799 * 179.97438 * 18 17 16 20 20 C 1.38437 * 120.17380 * 359.97438 * 19 18 17 21 21 C 1.38388 * 120.35393 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.91600 * 180.02562 * 21 20 19 23 23 F 1.39906 * 109.46999 * 359.97438 * 22 21 20 24 24 F 1.39898 * 109.47697 * 120.00034 * 22 21 20 25 25 F 1.39900 * 109.47063 * 240.00470 * 22 21 20 26 26 C 1.37902 * 120.17455 * 359.78797 * 21 20 19 27 27 H 1.09002 * 109.46852 * 146.72044 * 3 2 1 28 28 H 1.09001 * 109.47420 * 26.71892 * 3 2 1 29 29 H 0.97004 * 119.99947 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.00196 * 352.54121 * 15 13 4 31 31 H 1.08004 * 119.99611 * 169.95682 * 16 15 13 32 32 H 1.07991 * 120.09454 * 359.95894 * 18 17 16 33 33 H 1.07993 * 119.91025 * 180.02562 * 19 18 17 34 34 H 1.07996 * 119.82452 * 180.02562 * 20 19 18 35 35 H 1.08000 * 120.09206 * 180.25088 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 0.0800 1.3790 5 6 3.4273 1.2918 1.9184 6 1 4.1678 1.3499 2.7023 7 6 2.8101 2.4503 1.4572 8 7 1.9568 2.3878 0.4609 9 14 3.1951 4.0947 2.2554 10 1 4.3440 4.7265 1.5581 11 1 2.0083 4.9821 2.1582 12 1 3.5390 3.8829 3.6844 13 6 3.2194 -1.0418 2.1158 14 8 3.6248 -0.9759 3.2620 15 6 2.8711 -2.3387 1.5369 16 6 3.1345 -3.4742 2.2176 17 6 3.9646 -3.4285 3.4316 18 6 3.5815 -4.1419 4.5725 19 6 4.3650 -4.0944 5.7059 20 6 5.5281 -3.3438 5.7168 21 6 5.9144 -2.6362 4.5919 22 6 7.1828 -1.8228 4.6145 23 9 7.7890 -1.9391 5.8700 24 9 8.0566 -2.2938 3.6288 25 9 6.8799 -0.4797 4.3661 26 6 5.1442 -2.6774 3.4488 27 1 2.9709 0.8600 -0.5639 28 1 2.9718 -0.9171 -0.4620 29 1 1.5263 3.1955 0.1397 30 1 2.4031 -2.3880 0.5648 31 1 2.7358 -4.4163 1.8710 32 1 2.6746 -4.7280 4.5655 33 1 4.0709 -4.6449 6.5872 34 1 6.1378 -3.3109 6.6075 35 1 5.4490 -2.1279 2.5704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254886076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:52 Heat of formation + Delta-G solvation = -103.205105 kcal Electronic energy + Delta-G solvation = -27350.948341 eV Core-core repulsion = 22900.145861 eV Total energy + Delta-G solvation = -4450.802480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.14711 -48.67549 -48.60335 -40.99935 -39.80003 -37.58700 -36.22021 -34.73300 -33.74040 -32.70644 -30.69541 -29.18093 -27.04624 -26.93920 -24.72758 -23.00756 -22.41331 -20.13140 -19.68578 -19.46613 -19.35780 -19.08095 -17.98869 -17.91838 -17.19733 -16.55446 -16.19749 -15.86641 -15.55245 -15.48841 -15.24557 -15.10274 -15.06871 -14.81062 -14.78018 -14.72379 -14.54801 -14.33039 -13.81928 -13.67657 -13.52876 -13.33721 -13.26806 -13.07845 -12.93871 -12.42419 -12.21971 -12.17741 -12.15962 -12.06004 -11.06894 -10.87827 -10.38446 -10.03984 -9.74076 -9.00928 -8.40460 -6.03395 -0.17391 0.25797 0.97098 1.39278 1.42347 1.51534 1.72283 1.96154 2.22486 2.34400 2.55095 2.72997 2.80719 3.06862 3.09138 3.23580 3.48898 3.65921 3.83678 4.00932 4.11531 4.17959 4.36020 4.49386 4.61675 4.71032 4.79012 5.02248 5.05813 5.20983 5.26872 5.38527 5.42393 5.52160 5.65111 5.98157 6.12617 6.44892 7.04396 7.13319 7.35612 7.97806 8.59027 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.004993 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.654143 B = 5606.936213 C = 7049.620477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.265 3.735 3 C 0.220 3.780 4 N -0.449 5.449 5 C -0.320 4.320 6 H 0.080 0.920 7 C 0.006 3.994 8 N -0.895 5.895 9 Si 0.979 3.021 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.467 3.533 14 O -0.592 6.592 15 C -0.203 4.203 16 C -0.039 4.039 17 C -0.076 4.076 18 C -0.075 4.075 19 C -0.133 4.133 20 C -0.080 4.080 21 C -0.217 4.217 22 C 0.508 3.492 23 F -0.177 7.177 24 F -0.182 7.182 25 F -0.189 7.189 26 C 0.005 3.995 27 H 0.129 0.871 28 H 0.133 0.867 29 H 0.273 0.727 30 H 0.151 0.849 31 H 0.180 0.820 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.147 0.853 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -14.129 3.153 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.052 4.052 3 C 0.094 3.906 4 N -0.167 5.167 5 C -0.449 4.449 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.534 5.534 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.207 1.207 13 C 0.259 3.741 14 O -0.478 6.478 15 C -0.224 4.224 16 C -0.059 4.059 17 C -0.076 4.076 18 C -0.093 4.093 19 C -0.151 4.151 20 C -0.098 4.098 21 C -0.218 4.218 22 C 0.454 3.546 23 F -0.158 7.158 24 F -0.163 7.163 25 F -0.170 7.170 26 C -0.014 4.014 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.169 0.831 31 H 0.197 0.803 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.165 0.835 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.692 -13.860 3.574 15.404 hybrid contribution 0.649 1.944 0.197 2.059 sum 6.341 -11.916 3.771 14.015 Atomic orbital electron populations 1.80897 1.14793 1.14301 1.09739 1.29743 0.95756 0.88470 0.91241 1.19151 0.80069 1.05722 0.85645 1.43671 1.56096 1.06289 1.10673 1.19528 1.21461 0.83474 1.20403 0.90214 1.25929 0.94770 1.02401 0.96483 1.69697 1.27958 1.30455 1.25337 0.85108 0.77958 0.77943 0.78521 1.18633 1.20838 1.20671 1.19054 0.83116 0.85779 0.86108 1.90714 1.51082 1.86915 1.19111 1.23284 1.05607 0.91594 1.01900 1.22611 0.93012 0.98806 0.91478 1.19079 0.94257 0.98092 0.96194 1.21787 0.99486 0.96493 0.91544 1.21309 0.94027 1.00190 0.99553 1.21231 0.97673 0.94602 0.96274 1.19822 0.96820 1.06023 0.99140 1.18462 0.84765 0.78081 0.73287 1.93122 1.85124 1.95867 1.41712 1.93171 1.72038 1.88274 1.62853 1.93238 1.93240 1.36500 1.94049 1.20759 0.92917 0.91458 0.96224 0.85312 0.84995 0.91625 0.83117 0.80314 0.82369 0.81828 0.83534 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.81 18.54 20.01 0.37 -23.44 16 2 C 0.27 11.20 13.11 89.44 1.17 12.37 16 3 C 0.22 8.25 4.78 84.57 0.40 8.66 16 4 N -0.45 -20.27 2.59 -650.46 -1.68 -21.95 16 5 C -0.32 -16.49 9.19 84.15 0.77 -15.71 16 6 H 0.08 4.45 7.47 -2.91 -0.02 4.43 16 7 C 0.01 0.29 5.33 84.98 0.45 0.74 16 8 N -0.90 -44.07 8.75 21.69 0.19 -43.88 16 9 Si 0.98 41.67 29.55 68.60 2.03 43.70 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.47 19.94 6.56 86.32 0.57 20.51 16 14 O -0.59 -28.90 11.88 -4.52 -0.05 -28.95 16 15 C -0.20 -6.26 8.95 23.60 0.21 -6.05 16 16 C -0.04 -0.98 9.81 23.86 0.23 -0.75 16 17 C -0.08 -2.22 4.52 -20.15 -0.09 -2.31 16 18 C -0.08 -1.76 9.80 22.58 0.22 -1.53 16 19 C -0.13 -2.91 10.03 22.23 0.22 -2.69 16 20 C -0.08 -2.08 9.43 22.35 0.21 -1.87 16 21 C -0.22 -6.98 5.37 -19.91 -0.11 -7.09 16 22 C 0.51 16.69 3.31 71.23 0.24 16.93 16 23 F -0.18 -5.18 15.96 44.97 0.72 -4.47 16 24 F -0.18 -5.74 17.23 44.97 0.77 -4.97 16 25 F -0.19 -7.41 17.24 44.97 0.78 -6.64 16 26 C 0.01 0.18 6.14 22.58 0.14 0.32 16 27 H 0.13 5.10 6.45 -2.39 -0.02 5.08 16 28 H 0.13 3.50 6.51 -2.39 -0.02 3.48 16 29 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 30 H 0.15 3.75 6.25 -2.91 -0.02 3.73 16 31 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.16 2.58 8.06 -2.92 -0.02 2.56 16 33 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.15 3.16 7.14 -2.91 -0.02 3.14 16 35 H 0.10 3.87 7.06 -2.91 -0.02 3.85 16 Total: -1.00 -67.16 322.76 8.93 -58.23 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.17 Total: 10.86 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 4.65 Total: 21.51 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -1.12 Total: -89.28 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.05 Total: -28.95 kcal Atomic # 9 Polarization: -18.34 SS G_CDS: 2.27 Total: -16.07 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -67.16 8.93 -58.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254886076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.977 kcal (2) G-P(sol) polarization free energy of solvation -67.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds