Wall clock time and date at job start Tue Mar 31 2020 13:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47132 * 113.16029 * 3 2 1 5 5 N 1.46490 * 109.47305 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 3 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47235 * 59.99855 * 11 9 7 13 13 H 1.48500 * 109.47168 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47142 * 299.99797 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 3 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 5 19 19 C 1.38254 * 119.97961 * 264.72459 * 18 17 15 20 20 C 1.38179 * 120.03385 * 179.72747 * 19 18 17 21 21 C 1.38492 * 120.00390 * 0.54438 * 20 19 18 22 22 F 1.35097 * 120.01689 * 179.74961 * 21 20 19 23 23 C 1.38413 * 119.95971 * 359.72936 * 21 20 19 24 24 C 1.38335 * 119.96270 * 0.02562 * 23 21 20 25 25 Cl 1.73601 * 119.99864 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.46962 * 353.15948 * 3 2 1 27 27 H 1.08996 * 109.46635 * 233.15718 * 3 2 1 28 28 H 1.09006 * 109.47320 * 59.99615 * 4 3 2 29 29 H 1.09002 * 109.47139 * 299.99841 * 4 3 2 30 30 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 31 31 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 32 32 H 0.97001 * 119.99961 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 34 34 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 35 35 H 1.07993 * 119.97887 * 0.02562 * 19 18 17 36 36 H 1.08003 * 119.99413 * 180.27758 * 20 19 18 37 37 H 1.07997 * 120.01621 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5682 -1.3263 5 7 4.5827 0.5695 -1.3261 6 6 5.3142 1.7366 -0.8271 7 6 5.5648 2.6954 -1.9625 8 1 5.2145 2.4588 -2.9563 9 6 6.2411 3.8746 -1.7324 10 7 6.6671 4.1629 -0.5220 11 14 6.5511 5.0635 -3.1395 12 1 5.2530 5.5005 -3.7134 13 1 7.2916 6.2470 -2.6335 14 1 7.3545 4.3883 -4.1901 15 6 5.2576 -0.5032 -1.7848 16 8 6.4704 -0.5021 -1.7851 17 6 4.5051 -1.7036 -2.2985 18 6 5.4854 -2.7559 -2.7491 19 6 5.8509 -2.8348 -4.0801 20 6 6.7539 -3.7956 -4.4935 21 6 7.2848 -4.6873 -3.5765 22 9 8.1638 -5.6299 -3.9813 23 6 6.9145 -4.6118 -2.2449 24 6 6.0142 -3.6462 -1.8318 25 17 5.5487 -3.5511 -0.1621 26 1 2.9718 -1.0195 0.1224 27 1 2.9710 0.6170 0.8224 28 1 2.7539 1.5885 -1.4487 29 1 2.7547 -0.0481 -2.1487 30 1 4.7246 2.2326 -0.0561 31 1 6.2668 1.4156 -0.4057 32 1 7.1426 4.9927 -0.3600 33 1 3.8784 -2.1072 -1.5032 34 1 3.8786 -1.4072 -3.1397 35 1 5.4340 -2.1422 -4.7962 36 1 7.0424 -3.8538 -5.5327 37 1 7.3282 -5.3065 -1.5289 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269079985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:19 Heat of formation + Delta-G solvation = -56.561770 kcal Electronic energy + Delta-G solvation = -24311.207562 eV Core-core repulsion = 20414.224369 eV Total energy + Delta-G solvation = -3896.983193 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.96392 -41.09984 -39.78592 -37.93933 -37.44792 -36.61680 -34.87715 -33.60188 -32.11031 -31.94358 -29.70998 -27.88864 -25.27404 -24.67491 -24.15865 -22.72284 -19.93946 -18.87510 -18.75508 -18.29430 -17.90240 -17.75486 -17.20466 -16.65628 -16.53199 -16.07877 -15.82998 -15.66667 -15.44891 -14.90348 -14.74040 -14.66282 -14.36443 -14.19933 -13.87608 -13.54434 -13.50286 -13.29773 -13.01316 -12.91037 -12.79745 -12.67019 -12.45593 -12.32028 -12.22901 -12.12394 -11.90366 -11.79876 -11.64102 -10.59135 -10.54380 -9.96875 -9.56345 -9.41312 -8.13833 -6.25760 -0.03787 0.08381 1.04328 1.43068 1.45593 1.52083 1.71860 1.86436 1.97266 2.23621 2.44040 2.57615 3.16504 3.20143 3.20915 3.60007 3.68919 3.91182 3.93605 4.11514 4.14558 4.17351 4.39056 4.46657 4.64476 4.68541 4.86455 4.89082 4.91175 5.09242 5.10431 5.18543 5.30288 5.40076 5.66019 5.72725 5.92736 6.17560 6.62860 6.79560 6.87194 7.39281 7.58403 8.92631 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009699 B = 0.004374 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.236285 B = 6399.857624 C = 8276.965079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.041 4.041 4 C 0.112 3.888 5 N -0.598 5.598 6 C 0.261 3.739 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.011 3.989 10 N -0.928 5.928 11 Si 0.956 3.044 12 H -0.262 1.262 13 H -0.286 1.286 14 H -0.279 1.279 15 C 0.510 3.490 16 O -0.577 6.577 17 C -0.104 4.104 18 C -0.073 4.073 19 C -0.070 4.070 20 C -0.145 4.145 21 C 0.095 3.905 22 F -0.139 7.139 23 C -0.154 4.154 24 C -0.007 4.007 25 Cl -0.056 7.056 26 H 0.131 0.869 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.032 0.968 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 -17.142 -4.926 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.082 4.082 4 C -0.013 4.013 5 N -0.328 5.328 6 C 0.140 3.860 7 C -0.575 4.575 8 H 0.076 0.924 9 C -0.188 4.188 10 N -0.568 5.568 11 Si 0.781 3.219 12 H -0.187 1.187 13 H -0.212 1.212 14 H -0.204 1.204 15 C 0.298 3.702 16 O -0.457 6.457 17 C -0.143 4.143 18 C -0.074 4.074 19 C -0.088 4.088 20 C -0.164 4.164 21 C 0.075 3.925 22 F -0.118 7.118 23 C -0.174 4.174 24 C -0.034 4.034 25 Cl -0.026 7.026 26 H 0.149 0.851 27 H 0.136 0.864 28 H 0.104 0.896 29 H 0.131 0.869 30 H 0.050 0.950 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.453 -17.015 -4.670 18.787 hybrid contribution 1.218 0.815 -0.104 1.469 sum -5.235 -16.200 -4.773 17.682 Atomic orbital electron populations 1.81253 1.14342 1.10874 1.10121 1.29103 0.94875 0.91374 0.91739 1.19852 0.80222 1.06475 1.01649 1.21563 0.79103 1.03960 0.96660 1.48049 1.06678 1.16081 1.62033 1.18768 0.91395 0.82019 0.93803 1.21738 1.36158 1.03597 0.95996 0.92449 1.25713 0.95362 0.99872 0.97886 1.70026 1.39314 1.25464 1.21984 0.85645 0.78673 0.78122 0.79432 1.18705 1.21151 1.20416 1.20869 0.87686 0.84117 0.77480 1.90701 1.16268 1.82314 1.56385 1.20919 0.97328 0.90859 1.05164 1.19497 0.99041 0.95440 0.93440 1.21180 0.95709 0.97099 0.94778 1.21480 0.98336 0.95265 1.01293 1.17599 0.92125 0.89879 0.92856 1.91500 1.66534 1.62788 1.90989 1.21039 0.99779 1.00923 0.95614 1.20569 0.99043 0.97759 0.86020 1.98370 1.90864 1.97809 1.15606 0.85093 0.86364 0.89615 0.86950 0.95046 0.97981 0.92732 0.85532 0.84241 0.81809 0.81827 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.06 18.54 20.01 0.37 -12.69 16 2 C 0.25 5.13 15.43 89.44 1.38 6.51 16 3 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 4 C 0.11 2.49 5.17 86.38 0.45 2.94 16 5 N -0.60 -20.09 2.46 -826.16 -2.03 -22.12 16 6 C 0.26 12.22 5.16 85.64 0.44 12.66 16 7 C -0.54 -27.97 9.39 25.60 0.24 -27.73 16 8 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.01 0.58 5.46 84.65 0.46 1.04 16 10 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 11 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 13 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 C 0.51 16.97 7.67 87.66 0.67 17.64 16 16 O -0.58 -25.78 15.61 -3.03 -0.05 -25.83 16 17 C -0.10 -2.17 3.89 29.10 0.11 -2.06 16 18 C -0.07 -1.68 4.38 -19.84 -0.09 -1.76 16 19 C -0.07 -1.39 9.68 22.26 0.22 -1.18 16 20 C -0.15 -2.81 10.03 22.32 0.22 -2.58 16 21 C 0.09 2.09 7.30 22.37 0.16 2.26 16 22 F -0.14 -3.14 17.27 44.97 0.78 -2.36 16 23 C -0.15 -3.48 9.81 22.33 0.22 -3.26 16 24 C -0.01 -0.17 6.31 22.32 0.14 -0.03 16 25 Cl -0.06 -1.28 27.40 -2.72 -0.07 -1.36 16 26 H 0.13 1.70 7.22 -2.39 -0.02 1.68 16 27 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.09 2.13 8.07 -2.38 -0.02 2.11 16 29 H 0.11 1.72 6.44 -2.39 -0.02 1.70 16 30 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 31 H 0.00 0.11 7.42 -2.39 -0.02 0.10 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.13 2.03 6.17 -2.39 -0.01 2.02 16 34 H 0.14 1.97 7.31 -2.39 -0.02 1.96 16 35 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -72.51 350.25 7.23 -65.28 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.12 Total: 3.45 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 4.81 Total: 3.91 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -1.37 Total: -87.82 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.36 kcal Total: -72.51 7.23 -65.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269079985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.722 kcal (2) G-P(sol) polarization free energy of solvation -72.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds