Wall clock time and date at job start Tue Mar 31 2020 13:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48498 * 109.46832 * 269.99948 * 3 2 1 5 5 H 1.48490 * 109.47108 * 30.00123 * 3 2 1 6 6 H 1.48505 * 109.46912 * 150.00217 * 3 2 1 7 7 C 1.37874 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00327 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99986 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46917 * 180.02562 * 9 7 2 11 11 C 1.46493 * 120.00242 * 85.54289 * 10 9 7 12 12 C 1.50697 * 109.47453 * 84.93284 * 11 10 9 13 13 C 1.38223 * 119.61984 * 95.00208 * 12 11 10 14 14 C 1.38631 * 119.16232 * 180.02562 * 13 12 11 15 15 C 1.38667 * 118.41753 * 359.97438 * 14 13 12 16 16 C 1.38185 * 119.16626 * 0.27286 * 15 14 13 17 17 N 1.31858 * 119.61510 * 275.01762 * 12 11 10 18 18 C 1.34783 * 119.99619 * 265.53730 * 10 9 7 19 19 O 1.21273 * 119.99774 * 185.55921 * 18 10 9 20 20 C 1.50703 * 119.99832 * 5.56281 * 18 10 9 21 21 S 1.82848 * 110.31115 * 288.86425 * 20 18 10 22 22 C 1.82924 * 99.53231 * 217.12176 * 21 20 18 23 23 C 1.54498 * 104.97792 * 44.29281 * 22 21 20 24 24 S 1.82124 * 106.98172 * 313.62117 * 23 22 21 25 25 H 0.96992 * 119.99999 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47630 * 60.00197 * 9 7 2 27 27 H 1.09005 * 109.47237 * 299.99648 * 9 7 2 28 28 H 1.09006 * 109.47253 * 324.92770 * 11 10 9 29 29 H 1.09003 * 109.47133 * 204.93524 * 11 10 9 30 30 H 1.08003 * 120.41787 * 0.03939 * 13 12 11 31 31 H 1.07994 * 120.79094 * 180.02562 * 14 13 12 32 32 H 1.08004 * 120.41689 * 180.02562 * 15 14 13 33 33 H 1.08004 * 119.61915 * 179.70293 * 16 15 14 34 34 H 1.09001 * 110.27475 * 51.07585 * 20 18 10 35 35 H 1.09004 * 110.34435 * 285.41998 * 22 21 20 36 36 H 1.09002 * 110.42606 * 163.20989 * 22 21 20 37 37 H 1.08997 * 109.96030 * 194.23299 * 23 22 21 38 38 H 1.09010 * 109.98589 * 73.01442 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5752 -0.0022 11 6 4.1507 -3.2978 -1.2676 12 6 5.4918 -2.9743 -1.8742 13 6 6.5657 -3.8138 -1.6449 14 6 7.7951 -3.5069 -2.2071 15 6 7.8987 -2.3622 -2.9829 16 6 6.7825 -1.5680 -3.1638 17 7 5.6272 -1.8936 -2.6173 18 6 4.3107 -3.1810 1.1610 19 8 4.8094 -4.2864 1.1546 20 6 4.0384 -2.4846 2.4695 21 16 5.1966 -1.0884 2.6985 22 6 5.4765 -1.2197 4.5015 23 6 5.6837 -2.7279 4.7646 24 16 4.3679 -3.6103 3.8663 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6803 0.8888 27 1 3.8746 -0.6799 -0.8912 28 1 3.3593 -2.9972 -1.9542 29 1 4.0842 -4.3702 -1.0837 30 1 6.4484 -4.6978 -1.0355 31 1 8.6516 -4.1446 -2.0454 32 1 8.8410 -2.0926 -3.4367 33 1 6.8561 -0.6723 -3.7627 34 1 3.0073 -2.1324 2.5024 35 1 4.6060 -0.8560 5.0476 36 1 6.3656 -0.6591 4.7902 37 1 5.6076 -2.9332 5.8323 38 1 6.6605 -3.0399 4.3946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270419238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:21 Heat of formation + Delta-G solvation = 1.919020 kcal Electronic energy + Delta-G solvation = -23168.745039 eV Core-core repulsion = 19842.554646 eV Total energy + Delta-G solvation = -3326.190393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44869 -40.47295 -37.02174 -34.74598 -34.19253 -33.46928 -33.12397 -30.95149 -30.02408 -27.37892 -24.74890 -24.67508 -24.25003 -23.21754 -20.69453 -19.23891 -18.61315 -18.30090 -17.86874 -17.50040 -17.10252 -16.82051 -16.61388 -16.26545 -16.01354 -15.74742 -15.06826 -14.83291 -14.65909 -14.43152 -14.16342 -14.07270 -13.84775 -13.68576 -13.39046 -13.19307 -13.16614 -12.82706 -12.63989 -12.51589 -12.11384 -11.81622 -11.64359 -11.21994 -10.89211 -10.80836 -10.75513 -10.42198 -9.98463 -9.60706 -9.07788 -8.89356 -8.34587 -6.40959 -0.17935 0.06546 0.23036 0.39309 0.71957 1.35149 1.36063 1.47804 1.49775 1.74650 2.04119 2.31014 2.92911 2.99993 3.23666 3.38783 3.42086 3.77534 3.91744 3.97241 4.02452 4.16639 4.25179 4.36008 4.42025 4.47925 4.54892 4.65097 4.65861 4.73610 4.86053 4.87329 5.22834 5.26742 5.36811 5.46808 5.80628 6.06318 6.40728 6.61628 6.97046 7.09852 7.24428 8.81169 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.008382 B = 0.007203 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.626513 B = 3886.459608 C = 5896.976785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.030 3.970 3 Si 0.926 3.074 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.542 4.542 8 H 0.036 0.964 9 C 0.218 3.782 10 N -0.576 5.576 11 C 0.168 3.832 12 C 0.095 3.905 13 C -0.158 4.158 14 C -0.077 4.077 15 C -0.161 4.161 16 C 0.080 3.920 17 N -0.505 5.505 18 C 0.538 3.462 19 O -0.541 6.541 20 C -0.040 4.040 21 S -0.249 6.249 22 C -0.079 4.079 23 C -0.076 4.076 24 S -0.235 6.235 25 H 0.270 0.730 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.116 -2.138 4.476 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.169 4.169 3 Si 0.749 3.251 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.164 1.164 7 C -0.580 4.580 8 H 0.055 0.945 9 C 0.096 3.904 10 N -0.307 5.307 11 C 0.045 3.955 12 C -0.043 4.043 13 C -0.179 4.179 14 C -0.102 4.102 15 C -0.180 4.180 16 C -0.077 4.077 17 N -0.215 5.215 18 C 0.321 3.679 19 O -0.420 6.420 20 C -0.281 4.281 21 S -0.023 6.023 22 C -0.228 4.228 23 C -0.226 4.226 24 S -0.009 6.009 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.152 0.848 31 H 0.184 0.816 32 H 0.190 0.810 33 H 0.193 0.807 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.181 0.819 37 H 0.177 0.823 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.405 -2.303 3.826 18.939 hybrid contribution -0.099 0.560 0.258 0.625 sum 18.306 -1.742 4.084 18.837 Atomic orbital electron populations 1.70018 1.08000 1.28376 1.51007 1.25601 0.95363 1.02504 0.93480 0.86011 0.80278 0.79330 0.79503 1.19307 1.20133 1.16371 1.21432 0.90769 0.93524 1.52291 0.94541 1.19789 0.93313 0.78781 0.98562 1.47696 1.62694 1.15567 1.04695 1.20210 0.93501 0.97318 0.84493 1.21443 0.96319 0.91637 0.94917 1.22131 0.93942 1.01172 1.00630 1.21975 0.97303 0.96940 0.94021 1.22529 1.01024 0.95154 0.99332 1.23293 0.87793 0.99972 0.96643 1.67467 1.28526 1.16793 1.08732 1.19531 0.78019 0.85663 0.84641 1.90618 1.44490 1.20042 1.86853 1.25673 1.06330 0.98065 0.98074 1.87938 1.57128 1.41836 1.15377 1.24804 1.09114 0.98217 0.90658 1.24566 0.99507 0.93690 1.04841 1.87163 1.51809 1.36751 1.25135 0.92110 0.92804 0.94556 0.89972 0.88474 0.84833 0.81610 0.80954 0.80688 0.85264 0.86542 0.81918 0.82288 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.96 21.45 0.30 -56.55 16 2 C 0.03 1.73 5.47 84.65 0.46 2.19 16 3 Si 0.93 42.88 27.47 68.60 1.88 44.77 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 7 C -0.54 -30.49 9.76 25.60 0.25 -30.24 16 8 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 9 C 0.22 10.45 3.94 85.63 0.34 10.79 16 10 N -0.58 -25.44 2.44 -830.48 -2.03 -27.47 16 11 C 0.17 6.76 5.75 85.63 0.49 7.26 16 12 C 0.09 3.38 6.36 42.55 0.27 3.65 16 13 C -0.16 -4.72 9.72 22.36 0.22 -4.51 16 14 C -0.08 -1.70 10.18 22.47 0.23 -1.47 16 15 C -0.16 -3.26 10.11 22.36 0.23 -3.04 16 16 C 0.08 2.12 11.18 84.67 0.95 3.07 16 17 N -0.51 -17.97 10.24 -183.89 -1.88 -19.86 16 18 C 0.54 23.04 7.06 87.66 0.62 23.66 16 19 O -0.54 -23.72 15.52 -3.01 -0.05 -23.77 16 20 C -0.04 -1.55 2.99 71.24 0.21 -1.34 16 21 S -0.25 -8.17 19.84 -49.84 -0.99 -9.15 16 22 C -0.08 -1.52 7.04 72.49 0.51 -1.01 16 23 C -0.08 -1.46 6.84 72.49 0.50 -0.96 16 24 S -0.23 -7.49 21.50 -49.84 -1.07 -8.56 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.05 2.53 3.67 -7.81 -0.03 2.50 16 27 H 0.04 1.80 7.50 -2.38 -0.02 1.78 16 28 H 0.08 3.51 8.11 -2.38 -0.02 3.49 16 29 H 0.10 3.71 7.25 -2.39 -0.02 3.69 16 30 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 32 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.13 5.65 7.79 -2.39 -0.02 5.63 16 35 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -74.24 343.63 2.43 -71.80 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.00 Total: 20.74 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.27 Total: 8.06 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.61 Total: -103.88 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 16 Polarization: -15.65 SS G_CDS: -2.06 Total: -17.71 kcal Total: -74.24 2.43 -71.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270419238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.723 kcal (2) G-P(sol) polarization free energy of solvation -74.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds