Wall clock time and date at job start Tue Mar 31 2020 14:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00017 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99861 * 3 2 1 5 5 H 1.48497 * 109.47276 * 30.00363 * 3 2 1 6 6 H 1.48498 * 109.47035 * 150.00381 * 3 2 1 7 7 C 1.37879 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99545 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00491 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47378 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.46904 * 110.99635 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46653 * 180.02562 * 12 11 10 14 14 C 1.35386 * 126.73399 * 94.71437 * 13 12 11 15 15 N 1.36096 * 106.04971 * 179.88814 * 14 13 12 16 16 C 1.40318 * 125.93982 * 180.13823 * 15 14 13 17 17 C 1.38809 * 120.04521 * 47.55792 * 16 15 14 18 18 C 1.38104 * 119.97395 * 179.97438 * 17 16 15 19 19 C 1.38502 * 120.06330 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.95462 * 179.97438 * 19 18 17 21 21 C 1.38454 * 120.09247 * 0.02562 * 19 18 17 22 22 C 1.38232 * 120.02462 * 359.72903 * 21 19 18 23 23 Cl 1.73602 * 120.03502 * 180.29593 * 22 21 19 24 24 N 1.28726 * 108.11620 * 0.37919 * 15 14 13 25 25 N 1.28601 * 110.23904 * 359.75866 * 24 15 14 26 26 H 0.97001 * 120.00213 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47184 * 60.00007 * 9 7 2 28 28 H 1.08999 * 109.47144 * 300.00010 * 9 7 2 29 29 H 1.09002 * 109.46710 * 60.00019 * 10 9 7 30 30 H 1.08997 * 109.47413 * 300.01014 * 10 9 7 31 31 H 1.00895 * 111.00048 * 303.95873 * 11 10 9 32 32 H 1.08995 * 109.47179 * 300.00352 * 12 11 10 33 33 H 1.09000 * 109.47134 * 60.00592 * 12 11 10 34 34 H 1.07996 * 126.97187 * 359.97438 * 14 13 12 35 35 H 1.07998 * 120.01361 * 359.97438 * 17 16 15 36 36 H 1.08005 * 119.96701 * 180.02562 * 18 17 16 37 37 H 1.07996 * 119.99080 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4906 -2.6365 -0.0022 12 6 6.0170 -4.0080 -0.0027 13 6 7.5235 -3.9678 -0.0033 14 6 8.3357 -4.0355 1.0777 15 7 9.6073 -3.9645 0.5979 16 6 10.7808 -4.0004 1.3665 17 6 10.9392 -4.9690 2.3481 18 6 12.0949 -5.0033 3.1033 19 6 13.0964 -4.0726 2.8818 20 9 14.2259 -4.1080 3.6223 21 6 12.9412 -3.1054 1.9034 22 6 11.7881 -3.0707 1.1419 23 17 11.5965 -1.8628 -0.0902 24 7 9.5462 -3.8534 -0.6831 25 7 8.3202 -3.8523 -1.0715 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 3.6579 -3.1505 -0.8908 30 1 3.6585 -3.1502 0.8891 31 1 5.8515 -2.1106 -0.7839 32 1 5.6681 -4.5314 0.8874 33 1 5.6668 -4.5312 -0.8925 34 1 8.0355 -4.1286 2.1109 35 1 10.1590 -5.6954 2.5212 36 1 12.2183 -5.7573 3.8668 37 1 13.7234 -2.3807 1.7318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273008914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:56 Heat of formation + Delta-G solvation = 81.020010 kcal Electronic energy + Delta-G solvation = -23165.110384 eV Core-core repulsion = 19306.385935 eV Total energy + Delta-G solvation = -3858.724448 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.70309 -43.61409 -39.99229 -37.09846 -36.39963 -34.79943 -33.08096 -32.03964 -31.59260 -30.17497 -29.54330 -26.06371 -24.66979 -24.12840 -23.23492 -22.06479 -21.22192 -20.36887 -18.91860 -18.31508 -17.67281 -16.76361 -16.45005 -16.16183 -15.82587 -15.53836 -15.25662 -14.77159 -14.50493 -14.37486 -14.09249 -14.01312 -13.85233 -13.48497 -12.82982 -12.65659 -12.40875 -12.23045 -12.08752 -11.75462 -11.47333 -11.34233 -11.12174 -10.96643 -10.83466 -10.07330 -9.91341 -9.85560 -9.81768 -9.42203 -9.25346 -9.17110 -8.51927 -7.98362 -6.02884 -4.01175 -0.14902 0.13572 1.30540 1.38251 1.86307 2.35432 2.48863 3.34490 3.35755 3.41611 3.47826 3.70352 3.97914 4.08861 4.19385 4.40191 4.48242 4.63456 4.75471 4.87646 4.94130 4.96525 5.05788 5.13303 5.31855 5.32110 5.60352 5.70628 5.82247 5.99511 6.17566 6.27403 6.38661 6.77250 7.10825 7.38580 7.57766 7.73058 7.88711 8.28011 8.54249 9.01136 9.59687 11.10341 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.002285 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.681160 B =12249.656521 C =12589.484886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.691 5.691 12 C 0.142 3.858 13 C 0.001 3.999 14 C -0.027 4.027 15 N -0.260 5.260 16 C 0.122 3.878 17 C -0.064 4.064 18 C -0.134 4.134 19 C 0.129 3.871 20 F -0.124 7.124 21 C -0.135 4.135 22 C 0.006 3.994 23 Cl -0.015 7.015 24 N -0.065 5.065 25 N -0.252 5.252 26 H 0.263 0.737 27 H 0.025 0.975 28 H 0.009 0.991 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.341 0.659 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.196 0.804 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.175 -11.775 7.751 33.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.323 5.323 12 C 0.010 3.990 13 C -0.135 4.135 14 C -0.174 4.174 15 N -0.049 5.049 16 C 0.030 3.970 17 C -0.085 4.085 18 C -0.153 4.153 19 C 0.109 3.891 20 F -0.102 7.102 21 C -0.155 4.155 22 C -0.023 4.023 23 Cl 0.015 6.985 24 N -0.043 5.043 25 N -0.120 5.120 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.028 0.972 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.212 0.788 35 H 0.174 0.826 36 H 0.175 0.825 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 30.831 -11.344 7.016 33.592 hybrid contribution -0.131 0.715 0.158 0.744 sum 30.700 -10.630 7.174 33.271 Atomic orbital electron populations 1.69911 1.06308 1.26911 1.51153 1.25001 0.94726 0.99200 0.94490 0.86760 0.80470 0.83468 0.78518 1.20369 1.21461 1.18783 1.21061 0.89327 0.94524 1.50997 0.91034 1.19547 0.96663 0.91790 0.96804 1.21984 0.83376 1.00276 0.99766 1.60676 1.10163 1.11243 1.50171 1.20150 0.84290 0.92478 1.02037 1.22059 0.97983 1.04947 0.88539 1.23618 0.82028 1.09463 1.02294 1.44437 1.05089 1.49043 1.06298 1.17264 0.85789 0.98013 0.95952 1.20929 0.98326 0.95964 0.93253 1.21147 0.92380 1.00017 1.01770 1.17543 0.83771 0.96199 0.91637 1.91581 1.48256 1.95762 1.74586 1.20974 0.98044 1.00605 0.95888 1.20608 0.94562 0.92745 0.94400 1.98476 1.97081 1.52304 1.50662 1.78534 1.15981 1.18360 0.91382 1.75084 0.95265 1.15633 1.26045 0.92737 0.95670 0.97227 0.95636 0.91460 0.84165 0.89250 0.93299 0.78751 0.82615 0.82492 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.25 4.30 -27.89 -0.12 -0.37 16 10 C 0.07 1.46 5.62 -3.82 -0.02 1.44 16 11 N -0.69 -11.65 6.49 -115.05 -0.75 -12.39 16 12 C 0.14 1.92 6.25 -4.97 -0.03 1.89 16 13 C 0.00 0.01 6.76 -82.77 -0.56 -0.55 16 14 C -0.03 -0.29 11.22 -16.68 -0.19 -0.47 16 15 N -0.26 -2.91 3.21 -10.44 -0.03 -2.94 16 16 C 0.12 1.04 6.20 -83.51 -0.52 0.52 16 17 C -0.06 -0.34 9.63 -39.42 -0.38 -0.72 16 18 C -0.13 -0.55 10.02 -39.53 -0.40 -0.95 16 19 C 0.13 0.71 7.30 -39.40 -0.29 0.42 16 20 F -0.12 -0.75 17.26 2.25 0.04 -0.71 16 21 C -0.14 -0.84 9.80 -39.50 -0.39 -1.22 16 22 C 0.01 0.05 6.32 -39.33 -0.25 -0.20 16 23 Cl -0.01 -0.15 27.21 -51.86 -1.41 -1.57 16 24 N -0.06 -0.91 11.56 60.35 0.70 -0.21 16 25 N -0.25 -3.86 12.39 33.29 0.41 -3.45 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 28 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.34 5.90 8.72 -39.29 -0.34 5.56 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.16 0.49 8.03 -52.49 -0.42 0.07 16 36 H 0.16 0.25 8.06 -52.48 -0.42 -0.17 16 37 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -33.69 343.44 -7.41 -41.09 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.08 Total: -1.59 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -3.57 Total: -13.57 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 1.10 Total: -46.26 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 0.04 Total: -0.71 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.41 Total: -1.57 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.69 -7.41 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273008914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.113 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds