Wall clock time and date at job start Tue Mar 31 2020 14:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00017 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99861 * 3 2 1 5 5 H 1.48497 * 109.47276 * 30.00363 * 3 2 1 6 6 H 1.48498 * 109.47035 * 150.00381 * 3 2 1 7 7 C 1.37879 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99545 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00491 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47378 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.46904 * 110.99635 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46653 * 180.02562 * 12 11 10 14 14 C 1.35386 * 126.73399 * 94.71437 * 13 12 11 15 15 N 1.36096 * 106.04971 * 179.88814 * 14 13 12 16 16 C 1.40318 * 125.93982 * 180.13823 * 15 14 13 17 17 C 1.38809 * 120.04521 * 47.55792 * 16 15 14 18 18 C 1.38104 * 119.97395 * 179.97438 * 17 16 15 19 19 C 1.38502 * 120.06330 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.95462 * 179.97438 * 19 18 17 21 21 C 1.38454 * 120.09247 * 0.02562 * 19 18 17 22 22 C 1.38232 * 120.02462 * 359.72903 * 21 19 18 23 23 Cl 1.73602 * 120.03502 * 180.29593 * 22 21 19 24 24 N 1.28726 * 108.11620 * 0.37919 * 15 14 13 25 25 N 1.28601 * 110.23904 * 359.75866 * 24 15 14 26 26 H 0.97001 * 120.00213 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47184 * 60.00007 * 9 7 2 28 28 H 1.08999 * 109.47144 * 300.00010 * 9 7 2 29 29 H 1.09002 * 109.46710 * 60.00019 * 10 9 7 30 30 H 1.08997 * 109.47413 * 300.01014 * 10 9 7 31 31 H 1.00895 * 111.00048 * 303.95873 * 11 10 9 32 32 H 1.08995 * 109.47179 * 300.00352 * 12 11 10 33 33 H 1.09000 * 109.47134 * 60.00592 * 12 11 10 34 34 H 1.07996 * 126.97187 * 359.97438 * 14 13 12 35 35 H 1.07998 * 120.01361 * 359.97438 * 17 16 15 36 36 H 1.08005 * 119.96701 * 180.02562 * 18 17 16 37 37 H 1.07996 * 119.99080 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4906 -2.6365 -0.0022 12 6 6.0170 -4.0080 -0.0027 13 6 7.5235 -3.9678 -0.0033 14 6 8.3357 -4.0355 1.0777 15 7 9.6073 -3.9645 0.5979 16 6 10.7808 -4.0004 1.3665 17 6 10.9392 -4.9690 2.3481 18 6 12.0949 -5.0033 3.1033 19 6 13.0964 -4.0726 2.8818 20 9 14.2259 -4.1080 3.6223 21 6 12.9412 -3.1054 1.9034 22 6 11.7881 -3.0707 1.1419 23 17 11.5965 -1.8628 -0.0902 24 7 9.5462 -3.8534 -0.6831 25 7 8.3202 -3.8523 -1.0715 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 3.6579 -3.1505 -0.8908 30 1 3.6585 -3.1502 0.8891 31 1 5.8515 -2.1106 -0.7839 32 1 5.6681 -4.5314 0.8874 33 1 5.6668 -4.5312 -0.8925 34 1 8.0355 -4.1286 2.1109 35 1 10.1590 -5.6954 2.5212 36 1 12.2183 -5.7573 3.8668 37 1 13.7234 -2.3807 1.7318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273008914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:56 Heat of formation + Delta-G solvation = 58.563286 kcal Electronic energy + Delta-G solvation = -23166.084180 eV Core-core repulsion = 19306.385935 eV Total energy + Delta-G solvation = -3859.698245 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.15418 -44.49415 -40.51792 -37.76749 -37.72479 -35.73230 -34.94660 -33.16081 -32.36103 -31.25561 -30.65650 -27.47605 -25.36250 -25.10640 -24.40494 -22.82338 -22.29419 -21.96557 -19.56915 -18.94389 -18.87007 -18.26871 -17.04200 -16.96116 -16.79866 -16.36159 -16.23411 -16.01083 -15.54786 -15.24978 -15.12985 -14.80184 -14.64666 -14.55967 -14.47919 -13.99913 -13.81990 -13.24392 -12.89587 -12.77830 -12.65312 -12.61601 -12.19881 -12.08743 -11.87969 -11.82655 -11.72939 -11.55962 -11.39978 -10.75697 -10.35411 -10.31994 -9.86201 -9.33672 -8.28561 -6.32226 -0.69456 -0.29162 0.58657 0.68645 1.17621 1.36983 1.37287 1.38702 1.51791 2.01630 2.37366 2.91701 3.07185 3.17522 3.24834 3.52337 3.62087 3.76234 3.82140 3.86658 4.12487 4.25828 4.44148 4.44990 4.54885 4.57322 4.64777 4.71346 4.78108 4.92414 5.00134 5.04626 5.29139 5.31306 5.50870 5.64835 5.65428 6.11169 6.25472 6.42314 6.76071 7.32551 7.35504 8.87851 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.002285 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.681160 B =12249.656521 C =12589.484886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.006 4.006 10 C 0.088 3.912 11 N -0.690 5.690 12 C 0.146 3.854 13 C -0.021 4.021 14 C -0.007 4.007 15 N -0.251 5.251 16 C 0.093 3.907 17 C -0.051 4.051 18 C -0.116 4.116 19 C 0.130 3.870 20 F -0.125 7.125 21 C -0.135 4.135 22 C -0.009 4.009 23 Cl -0.044 7.044 24 N -0.091 5.091 25 N -0.289 5.289 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.011 0.989 29 H 0.019 0.981 30 H 0.071 0.929 31 H 0.337 0.663 32 H 0.114 0.886 33 H 0.044 0.956 34 H 0.234 0.766 35 H 0.183 0.817 36 H 0.191 0.809 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.436 -12.482 9.934 36.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.044 4.044 10 C -0.041 4.041 11 N -0.320 5.320 12 C 0.016 3.984 13 C -0.158 4.158 14 C -0.155 4.155 15 N -0.039 5.039 16 C 0.002 3.998 17 C -0.071 4.071 18 C -0.135 4.135 19 C 0.110 3.890 20 F -0.103 7.103 21 C -0.155 4.155 22 C -0.038 4.038 23 Cl -0.015 7.015 24 N -0.068 5.068 25 N -0.157 5.157 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.251 0.749 35 H 0.201 0.799 36 H 0.209 0.791 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 33.138 -12.071 9.192 36.446 hybrid contribution -0.748 0.802 -0.410 1.171 sum 32.389 -11.269 8.782 35.400 Atomic orbital electron populations 1.70053 1.08161 1.28128 1.52677 1.25951 0.95587 1.03359 0.94192 0.85661 0.79496 0.78496 0.78989 1.19578 1.20866 1.17245 1.21407 0.91817 0.93309 1.50302 0.94449 1.19447 0.93627 0.94746 0.96585 1.21660 0.85362 0.97318 0.99740 1.60607 1.07990 1.13473 1.49969 1.20170 0.84719 0.90491 1.03016 1.22055 0.97800 1.06822 0.89151 1.24145 0.81331 1.06820 1.03223 1.44596 1.06163 1.47445 1.05738 1.17676 0.85262 0.99702 0.97177 1.21233 0.99206 0.95060 0.91586 1.21506 0.90971 0.99607 1.01412 1.17664 0.83989 0.96170 0.91179 1.91587 1.48490 1.95745 1.74521 1.21068 0.97568 1.01130 0.95706 1.20705 0.95640 0.92831 0.94604 1.98462 1.97237 1.53643 1.52146 1.78469 1.15554 1.19800 0.93020 1.75029 0.96083 1.16949 1.27612 0.92481 0.95767 0.97054 0.96252 0.91035 0.84629 0.86813 0.93759 0.74931 0.79947 0.79140 0.81256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.01 0.36 5.47 84.66 0.46 0.82 16 3 Si 0.95 45.36 27.47 68.60 1.88 47.24 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 7 C -0.53 -30.73 9.66 25.60 0.25 -30.49 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 9 C -0.01 -0.29 4.30 29.85 0.13 -0.17 16 10 C 0.09 3.40 5.62 86.30 0.49 3.88 16 11 N -0.69 -22.33 6.49 -517.92 -3.36 -25.69 16 12 C 0.15 3.74 6.25 85.56 0.53 4.28 16 13 C -0.02 -0.54 6.76 41.61 0.28 -0.26 16 14 C -0.01 -0.13 11.22 83.37 0.94 0.81 16 15 N -0.25 -5.21 3.21 -186.94 -0.60 -5.81 16 16 C 0.09 1.39 6.20 38.08 0.24 1.63 16 17 C -0.05 -0.34 9.63 22.37 0.22 -0.12 16 18 C -0.12 -0.47 10.02 22.30 0.22 -0.25 16 19 C 0.13 1.05 7.30 22.38 0.16 1.21 16 20 F -0.13 -1.17 17.26 44.97 0.78 -0.39 16 21 C -0.13 -1.45 9.80 22.32 0.22 -1.23 16 22 C -0.01 -0.14 6.32 22.43 0.14 0.00 16 23 Cl -0.04 -0.93 27.21 -2.72 -0.07 -1.01 16 24 N -0.09 -2.54 11.56 37.02 0.43 -2.11 16 25 N -0.29 -8.84 12.39 -48.58 -0.60 -9.44 16 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 28 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.34 11.42 8.72 -89.70 -0.78 10.64 16 32 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.23 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.18 0.23 8.03 -2.91 -0.02 0.21 16 36 H 0.19 -0.45 8.06 -2.91 -0.02 -0.48 16 37 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -75.19 343.44 3.31 -71.88 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.28 Total: 4.86 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 4.27 Total: -19.89 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -3.84 Total: -102.70 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.78 Total: -0.39 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.07 Total: -1.01 kcal Total: -75.19 3.31 -71.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273008914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.447 kcal (2) G-P(sol) polarization free energy of solvation -75.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds