Wall clock time and date at job start Tue Mar 31 2020 14:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99497 * 2 1 4 4 H 1.48500 * 109.47070 * 270.00098 * 3 2 1 5 5 H 1.48498 * 109.46967 * 30.00352 * 3 2 1 6 6 H 1.48501 * 109.46857 * 150.00197 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99714 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46809 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.46895 * 111.00263 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47442 * 179.97438 * 12 11 10 14 14 C 1.35370 * 126.73572 * 95.26714 * 13 12 11 15 15 N 1.36103 * 106.05376 * 180.17074 * 14 13 12 16 16 C 1.40296 * 125.94011 * 179.88205 * 15 14 13 17 17 C 1.38837 * 120.03165 * 179.71280 * 16 15 14 18 18 C 1.38105 * 119.98682 * 179.97438 * 17 16 15 19 19 C 1.38472 * 120.04952 * 359.97438 * 18 17 16 20 20 F 1.35097 * 119.96851 * 180.02562 * 19 18 17 21 21 C 1.38579 * 120.06979 * 0.02562 * 19 18 17 22 22 Cl 1.73595 * 119.99326 * 180.02562 * 21 19 18 23 23 C 1.38230 * 120.01677 * 359.97438 * 21 19 18 24 24 N 1.28726 * 108.11410 * 359.62279 * 15 14 13 25 25 N 1.28602 * 110.23447 * 0.23997 * 24 15 14 26 26 H 0.96994 * 120.00491 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46882 * 60.00040 * 9 7 2 28 28 H 1.08991 * 109.46783 * 299.99714 * 9 7 2 29 29 H 1.08997 * 109.47335 * 60.00355 * 10 9 7 30 30 H 1.09004 * 109.47469 * 299.99682 * 10 9 7 31 31 H 1.00901 * 110.99698 * 303.95414 * 11 10 9 32 32 H 1.09000 * 109.46949 * 59.99869 * 12 11 10 33 33 H 1.09003 * 109.47065 * 299.99894 * 12 11 10 34 34 H 1.08008 * 126.97556 * 0.06785 * 14 13 12 35 35 H 1.08002 * 120.00910 * 0.02562 * 17 16 15 36 36 H 1.07993 * 119.97855 * 179.72294 * 18 17 16 37 37 H 1.08000 * 120.02939 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5111 -4.9342 -0.0024 12 6 2.4356 -6.0758 -0.0031 13 6 1.6477 -7.3604 -0.0031 14 6 1.3088 -8.1024 -1.0834 15 7 0.6023 -9.1628 -0.6050 16 6 0.0467 -10.1964 -1.3740 17 6 -0.6489 -11.2262 -0.7550 18 6 -1.1959 -12.2429 -1.5129 19 6 -1.0517 -12.2358 -2.8900 20 9 -1.5879 -13.2309 -3.6299 21 6 -0.3578 -11.2090 -3.5102 22 17 -0.1787 -11.2017 -5.2369 23 6 0.1909 -10.1900 -2.7544 24 7 0.5373 -9.0553 0.6761 25 7 1.1497 -7.9934 1.0649 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8896 29 1 2.8728 -3.6046 0.8877 30 1 2.8715 -3.6038 -0.8923 31 1 0.8750 -4.9849 0.7792 32 1 3.0636 -6.0352 0.8869 33 1 3.0635 -6.0343 -0.8931 34 1 1.5488 -7.8942 -2.1157 35 1 -0.7629 -11.2318 0.3190 36 1 -1.7331 -13.0462 -1.0308 37 1 0.7320 -9.3899 -3.2374 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273065677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:44 Heat of formation + Delta-G solvation = 77.586246 kcal Electronic energy + Delta-G solvation = -22872.329335 eV Core-core repulsion = 19013.455988 eV Total energy + Delta-G solvation = -3858.873347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.62240 -43.70011 -39.95908 -37.30746 -36.30222 -34.74389 -33.15701 -32.18092 -31.41668 -30.13805 -29.17464 -25.97354 -24.76938 -24.14777 -23.24821 -22.03412 -21.10004 -20.54411 -19.03285 -18.18457 -17.15386 -16.89554 -16.38048 -16.26555 -16.10815 -15.45142 -15.19206 -14.65291 -14.45658 -14.30010 -14.22242 -14.00987 -13.68277 -13.50145 -12.76549 -12.52753 -12.45664 -12.19067 -12.10043 -11.69535 -11.59612 -11.18306 -11.07112 -10.99022 -10.91747 -10.55452 -10.02029 -9.83006 -9.62812 -9.36134 -9.16070 -9.01540 -8.35294 -7.89782 -5.99418 -4.02237 -0.17993 0.16379 1.20012 1.44564 1.85630 2.30599 2.68141 3.28325 3.32555 3.38735 3.41816 3.72266 3.90583 4.09191 4.22978 4.38233 4.45094 4.69824 4.75141 4.86233 4.92662 5.01521 5.08104 5.22439 5.36571 5.41671 5.63971 5.67947 5.84732 5.97255 6.29331 6.35419 6.37451 6.95052 7.39974 7.71618 7.77925 7.91108 8.07079 8.20425 8.42581 9.05077 9.61576 11.12007 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.001980 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.615091 B =14136.569993 C =14923.856003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.688 5.688 12 C 0.140 3.860 13 C 0.005 3.995 14 C -0.030 4.030 15 N -0.254 5.254 16 C 0.139 3.861 17 C -0.070 4.070 18 C -0.119 4.119 19 C 0.115 3.885 20 F -0.119 7.119 21 C -0.055 4.055 22 Cl -0.029 7.029 23 C -0.085 4.085 24 N -0.080 5.080 25 N -0.246 5.246 26 H 0.261 0.739 27 H 0.025 0.975 28 H 0.014 0.986 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.342 0.658 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.197 0.803 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -29.103 -7.326 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.320 5.320 12 C 0.009 3.991 13 C -0.130 4.130 14 C -0.178 4.178 15 N -0.041 5.041 16 C 0.046 3.954 17 C -0.090 4.090 18 C -0.138 4.138 19 C 0.094 3.906 20 F -0.097 7.097 21 C -0.084 4.084 22 Cl 0.000 7.000 23 C -0.106 4.106 24 N -0.057 5.057 25 N -0.114 5.114 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.214 0.786 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.247 -29.585 -6.847 30.393 hybrid contribution 0.965 1.242 -0.493 1.648 sum -0.282 -28.343 -7.340 29.279 Atomic orbital electron populations 1.69971 1.06048 1.26616 1.50590 1.25011 0.94844 0.99251 0.95310 0.86580 0.79796 0.83435 0.78088 1.20644 1.21242 1.19902 1.21165 0.92995 0.90944 1.50935 0.92676 1.19068 0.94030 0.90352 0.97811 1.22198 0.97081 0.87961 0.98950 1.60683 1.19436 1.01578 1.50262 1.20184 0.92586 0.84411 1.01967 1.22100 1.03144 0.99374 0.88424 1.23581 1.01706 0.89962 1.02520 1.44511 1.36006 1.17098 1.06504 1.17393 0.99600 0.89125 0.89261 1.20979 0.94693 0.91109 1.02263 1.21080 1.01515 1.00493 0.90740 1.17480 0.97103 0.86585 0.89415 1.91585 1.83413 1.58232 1.76476 1.20608 1.03414 0.96950 0.87404 1.98433 1.96295 1.98226 1.07039 1.20647 1.00337 0.98882 0.90778 1.78338 1.19616 1.16353 0.91418 1.75085 1.09347 1.00921 1.26055 0.92977 0.95653 0.96716 0.96229 0.92066 0.84035 0.93404 0.89288 0.78629 0.82166 0.82166 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.64 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.34 5.62 -3.82 -0.02 1.32 16 11 N -0.69 -12.08 6.49 -115.06 -0.75 -12.83 16 12 C 0.14 1.95 6.25 -4.98 -0.03 1.92 16 13 C 0.01 0.07 6.76 -82.77 -0.56 -0.49 16 14 C -0.03 -0.33 10.85 -16.68 -0.18 -0.51 16 15 N -0.25 -2.80 3.56 -10.47 -0.04 -2.84 16 16 C 0.14 1.16 6.68 -83.56 -0.56 0.60 16 17 C -0.07 -0.47 9.62 -39.41 -0.38 -0.85 16 18 C -0.12 -0.63 10.02 -39.54 -0.40 -1.03 16 19 C 0.12 0.78 7.27 -39.37 -0.29 0.49 16 20 F -0.12 -0.89 16.83 2.25 0.04 -0.85 16 21 C -0.06 -0.39 6.32 -39.46 -0.25 -0.64 16 22 Cl -0.03 -0.21 28.61 -51.86 -1.48 -1.70 16 23 C -0.08 -0.59 9.24 -39.38 -0.36 -0.95 16 24 N -0.08 -1.08 12.41 60.35 0.75 -0.33 16 25 N -0.25 -3.74 12.39 33.29 0.41 -3.33 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.34 6.23 8.72 -39.29 -0.34 5.89 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.20 1.42 7.10 -52.48 -0.37 1.05 16 35 H 0.16 0.99 7.69 -52.49 -0.40 0.59 16 36 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.16 0.84 6.77 -52.49 -0.36 0.49 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -32.46 346.11 -7.69 -40.15 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -3.97 Total: -0.72 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.58 Total: -13.11 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 1.11 Total: -45.57 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.04 Total: -0.85 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.48 Total: -1.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.46 -7.69 -40.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273065677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.739 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds