Wall clock time and date at job start Tue Mar 31 2020 14:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99497 * 2 1 4 4 H 1.48500 * 109.47070 * 270.00098 * 3 2 1 5 5 H 1.48498 * 109.46967 * 30.00352 * 3 2 1 6 6 H 1.48501 * 109.46857 * 150.00197 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99714 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46809 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.46895 * 111.00263 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47442 * 179.97438 * 12 11 10 14 14 C 1.35370 * 126.73572 * 95.26714 * 13 12 11 15 15 N 1.36103 * 106.05376 * 180.17074 * 14 13 12 16 16 C 1.40296 * 125.94011 * 179.88205 * 15 14 13 17 17 C 1.38837 * 120.03165 * 179.71280 * 16 15 14 18 18 C 1.38105 * 119.98682 * 179.97438 * 17 16 15 19 19 C 1.38472 * 120.04952 * 359.97438 * 18 17 16 20 20 F 1.35097 * 119.96851 * 180.02562 * 19 18 17 21 21 C 1.38579 * 120.06979 * 0.02562 * 19 18 17 22 22 Cl 1.73595 * 119.99326 * 180.02562 * 21 19 18 23 23 C 1.38230 * 120.01677 * 359.97438 * 21 19 18 24 24 N 1.28726 * 108.11410 * 359.62279 * 15 14 13 25 25 N 1.28602 * 110.23447 * 0.23997 * 24 15 14 26 26 H 0.96994 * 120.00491 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46882 * 60.00040 * 9 7 2 28 28 H 1.08991 * 109.46783 * 299.99714 * 9 7 2 29 29 H 1.08997 * 109.47335 * 60.00355 * 10 9 7 30 30 H 1.09004 * 109.47469 * 299.99682 * 10 9 7 31 31 H 1.00901 * 110.99698 * 303.95414 * 11 10 9 32 32 H 1.09000 * 109.46949 * 59.99869 * 12 11 10 33 33 H 1.09003 * 109.47065 * 299.99894 * 12 11 10 34 34 H 1.08008 * 126.97556 * 0.06785 * 14 13 12 35 35 H 1.08002 * 120.00910 * 0.02562 * 17 16 15 36 36 H 1.07993 * 119.97855 * 179.72294 * 18 17 16 37 37 H 1.08000 * 120.02939 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5111 -4.9342 -0.0024 12 6 2.4356 -6.0758 -0.0031 13 6 1.6477 -7.3604 -0.0031 14 6 1.3088 -8.1024 -1.0834 15 7 0.6023 -9.1628 -0.6050 16 6 0.0467 -10.1964 -1.3740 17 6 -0.6489 -11.2262 -0.7550 18 6 -1.1959 -12.2429 -1.5129 19 6 -1.0517 -12.2358 -2.8900 20 9 -1.5879 -13.2309 -3.6299 21 6 -0.3578 -11.2090 -3.5102 22 17 -0.1787 -11.2017 -5.2369 23 6 0.1909 -10.1900 -2.7544 24 7 0.5373 -9.0553 0.6761 25 7 1.1497 -7.9934 1.0649 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8896 29 1 2.8728 -3.6046 0.8877 30 1 2.8715 -3.6038 -0.8923 31 1 0.8750 -4.9849 0.7792 32 1 3.0636 -6.0352 0.8869 33 1 3.0635 -6.0343 -0.8931 34 1 1.5488 -7.8942 -2.1157 35 1 -0.7629 -11.2318 0.3190 36 1 -1.7331 -13.0462 -1.0308 37 1 0.7320 -9.3899 -3.2374 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273065677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:44 Heat of formation + Delta-G solvation = 56.976891 kcal Electronic energy + Delta-G solvation = -22873.223024 eV Core-core repulsion = 19013.455988 eV Total energy + Delta-G solvation = -3859.767036 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.18491 -44.60284 -40.53798 -37.91240 -37.64312 -35.71666 -34.99054 -33.20089 -32.30890 -31.01277 -30.59974 -27.42758 -25.51275 -25.39205 -24.36438 -22.82450 -22.40778 -21.91938 -19.73686 -18.80925 -18.48159 -17.74136 -17.73049 -16.97445 -16.92542 -16.65437 -16.40008 -15.93008 -15.51565 -15.24394 -15.14722 -14.83374 -14.43887 -14.38838 -14.14827 -13.91363 -13.80306 -13.18125 -13.11568 -12.83764 -12.76310 -12.54245 -12.41751 -12.23404 -12.10283 -11.87397 -11.81350 -11.40237 -11.28077 -10.54517 -10.43632 -10.34202 -9.71633 -9.30992 -8.18016 -6.29366 -0.81005 -0.33641 0.62907 0.67445 1.13108 1.29269 1.42770 1.44310 1.55270 2.11256 2.42829 2.75900 3.04062 3.15735 3.25850 3.49252 3.54877 3.57617 3.76780 3.91674 4.08316 4.20150 4.36978 4.46088 4.52811 4.58841 4.65516 4.70745 4.76323 4.95366 5.02745 5.11306 5.15995 5.47438 5.60063 5.69631 5.79881 6.12704 6.25550 6.43171 6.88635 7.25608 7.40022 8.94262 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.001980 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.615091 B =14136.569993 C =14923.856003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.030 3.970 10 C 0.084 3.916 11 N -0.692 5.692 12 C 0.145 3.855 13 C -0.018 4.018 14 C -0.016 4.016 15 N -0.245 5.245 16 C 0.113 3.887 17 C -0.068 4.068 18 C -0.106 4.106 19 C 0.114 3.886 20 F -0.123 7.123 21 C -0.062 4.062 22 Cl -0.032 7.032 23 C -0.076 4.076 24 N -0.098 5.098 25 N -0.283 5.283 26 H 0.263 0.737 27 H -0.004 1.004 28 H -0.014 1.014 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.335 0.665 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.233 0.767 35 H 0.164 0.836 36 H 0.189 0.811 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 -29.904 -8.386 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.008 4.008 10 C -0.044 4.044 11 N -0.323 5.323 12 C 0.015 3.985 13 C -0.154 4.154 14 C -0.164 4.164 15 N -0.033 5.033 16 C 0.022 3.978 17 C -0.088 4.088 18 C -0.125 4.125 19 C 0.093 3.907 20 F -0.101 7.101 21 C -0.091 4.091 22 Cl -0.003 7.003 23 C -0.097 4.097 24 N -0.075 5.075 25 N -0.150 5.150 26 H 0.072 0.928 27 H 0.014 0.986 28 H 0.004 0.996 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.250 0.750 35 H 0.181 0.819 36 H 0.206 0.794 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.176 -30.430 -7.906 31.441 hybrid contribution 0.551 1.336 -0.229 1.464 sum 0.375 -29.094 -8.135 30.212 Atomic orbital electron populations 1.70116 1.07916 1.27746 1.51637 1.26008 0.95753 1.03500 0.94755 0.85407 0.78609 0.78239 0.78529 1.19632 1.21031 1.18587 1.21633 0.93696 0.92071 1.50569 0.91711 1.18933 0.94414 0.92487 0.94940 1.21820 0.95541 0.87461 0.99580 1.60604 1.19988 1.01686 1.49998 1.20205 0.92035 0.83158 1.03125 1.22084 1.04467 0.99796 0.89076 1.24093 0.99952 0.88879 1.03454 1.44664 1.35137 1.17412 1.06043 1.17654 1.01164 0.89334 0.89685 1.21119 0.94149 0.90910 1.02617 1.21308 1.00621 1.00515 0.90020 1.17677 0.96810 0.86315 0.89939 1.91580 1.83456 1.58400 1.76676 1.20671 1.03849 0.97265 0.87317 1.98434 1.96336 1.98244 1.07282 1.20744 0.99794 0.99071 0.90127 1.78252 1.20309 1.16284 0.92703 1.75025 1.10611 1.01934 1.27473 0.92835 0.98594 0.99589 0.95970 0.90887 0.84866 0.93505 0.86771 0.75030 0.81869 0.79352 0.80877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.58 5.23 29.85 0.16 1.74 16 10 C 0.08 3.42 5.62 86.30 0.49 3.91 16 11 N -0.69 -24.16 6.49 -517.93 -3.36 -27.52 16 12 C 0.15 3.87 6.25 85.56 0.53 4.41 16 13 C -0.02 -0.46 6.76 41.60 0.28 -0.18 16 14 C -0.02 -0.31 10.85 83.37 0.90 0.59 16 15 N -0.25 -5.12 3.56 -187.03 -0.67 -5.78 16 16 C 0.11 1.70 6.68 38.06 0.25 1.96 16 17 C -0.07 -0.80 9.62 22.38 0.22 -0.59 16 18 C -0.11 -0.88 10.02 22.29 0.22 -0.65 16 19 C 0.11 1.31 7.27 22.41 0.16 1.47 16 20 F -0.12 -1.63 16.83 44.97 0.76 -0.87 16 21 C -0.06 -0.77 6.32 22.35 0.14 -0.63 16 22 Cl -0.03 -0.42 28.61 -2.72 -0.08 -0.50 16 23 C -0.08 -0.90 9.24 22.40 0.21 -0.69 16 24 N -0.10 -2.64 12.41 37.02 0.46 -2.18 16 25 N -0.28 -8.65 12.39 -48.59 -0.60 -9.25 16 26 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 2.78 8.14 -2.38 -0.02 2.77 16 31 H 0.33 12.49 8.72 -89.69 -0.78 11.71 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.23 2.60 7.10 -2.91 -0.02 2.58 16 35 H 0.16 1.83 7.69 -2.91 -0.02 1.81 16 36 H 0.19 0.45 8.06 -2.91 -0.02 0.42 16 37 H 0.17 1.38 6.77 -2.91 -0.02 1.36 16 Total: -1.00 -71.26 346.11 3.42 -67.84 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.34 Total: 8.03 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 4.26 Total: -18.77 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.89 Total: -101.90 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.76 Total: -0.87 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -71.26 3.42 -67.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273065677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.817 kcal (2) G-P(sol) polarization free energy of solvation -71.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds