Wall clock time and date at job start Tue Mar 31 2020 14:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86792 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47416 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.47043 * 29.99959 * 3 2 1 6 6 H 1.48499 * 109.47509 * 149.99804 * 3 2 1 7 7 C 1.37877 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47219 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46990 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00101 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00147 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00368 * 180.02562 * 12 11 10 15 15 C 1.39943 * 120.00177 * 185.31188 * 14 12 11 16 16 C 1.38894 * 120.50274 * 213.22483 * 15 14 12 17 17 C 1.37456 * 120.36443 * 180.52606 * 16 15 14 18 18 C 1.39900 * 121.15799 * 359.76468 * 17 16 15 19 19 C 1.38328 * 117.74236 * 359.59466 * 18 17 16 20 20 C 1.37864 * 121.56196 * 0.49315 * 19 18 17 21 21 S 1.77626 * 107.83177 * 180.71459 * 19 18 17 22 22 O 1.42095 * 105.49484 * 129.47698 * 21 19 18 23 23 O 1.42102 * 105.49201 * 259.92773 * 21 19 18 24 24 C 1.83516 * 97.21148 * 14.70089 * 21 19 18 25 25 C 1.50940 * 126.49293 * 179.31302 * 18 17 16 26 26 H 0.96999 * 120.00063 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46761 * 59.99956 * 9 7 2 28 28 H 1.09002 * 109.46862 * 300.00752 * 9 7 2 29 29 H 1.09007 * 109.47157 * 60.00492 * 10 9 7 30 30 H 1.08996 * 109.47504 * 299.99771 * 10 9 7 31 31 H 0.96998 * 120.00025 * 0.02562 * 11 10 9 32 32 H 0.97008 * 119.99510 * 5.30961 * 14 12 11 33 33 H 1.07995 * 119.81735 * 0.25217 * 16 15 14 34 34 H 1.07996 * 119.42103 * 179.78459 * 17 16 15 35 35 H 1.07999 * 119.90801 * 179.78234 * 20 19 18 36 36 H 1.08999 * 111.19705 * 93.67185 * 24 21 19 37 37 H 1.08997 * 111.20143 * 217.98277 * 24 21 19 38 38 H 1.09000 * 109.20584 * 39.46252 * 25 18 17 39 39 H 1.09001 * 109.12943 * 280.16942 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0980 -0.0003 13 8 3.4025 -6.0981 -0.0007 14 7 1.5128 -7.2653 -0.0003 15 6 2.2080 -8.4746 0.1115 16 6 1.7455 -9.6157 -0.5312 17 6 2.4248 -10.8047 -0.4107 18 6 3.5938 -10.8963 0.3523 19 6 4.0481 -9.7476 0.9748 20 6 3.3735 -8.5506 0.8619 21 16 5.5425 -10.1549 1.8444 22 8 6.4925 -9.1765 1.4454 23 8 5.1577 -10.3239 3.2018 24 6 5.8527 -11.7681 1.0263 25 6 4.4236 -12.1368 0.5778 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6044 0.8896 30 1 2.8719 -3.6044 -0.8905 31 1 0.5428 -4.9308 0.0000 32 1 0.5458 -7.2670 -0.0777 33 1 0.8449 -9.5697 -1.1254 34 1 2.0496 -11.6833 -0.9142 35 1 3.7503 -7.6708 1.3623 36 1 6.5174 -11.6544 0.1700 37 1 6.2457 -12.4992 1.7327 38 1 4.4747 -12.7075 -0.3495 39 1 3.9521 -12.7468 1.3484 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273309332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:02 Heat of formation + Delta-G solvation = -68.198697 kcal Electronic energy + Delta-G solvation = -24166.936383 eV Core-core repulsion = 20394.952586 eV Total energy + Delta-G solvation = -3771.983797 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.71281 -39.18616 -37.29672 -36.22235 -35.96492 -34.86149 -33.70412 -32.82557 -31.32268 -29.97137 -28.63445 -25.18066 -24.50173 -23.71620 -21.99384 -21.05803 -20.72970 -19.44846 -18.45069 -17.84496 -16.94769 -16.54878 -16.39596 -16.05263 -15.62424 -15.41258 -14.98659 -14.73378 -14.54780 -14.49143 -13.96676 -13.71263 -13.60482 -13.24431 -13.18535 -12.68619 -12.34023 -12.30962 -12.24475 -12.19886 -12.13658 -11.23926 -11.11022 -11.04425 -10.70522 -10.64942 -10.50697 -10.32942 -10.06093 -9.63047 -9.52838 -9.30415 -8.69470 -8.43839 -8.16032 -6.11732 -4.14527 -0.20356 0.57226 0.99851 2.43086 2.65977 3.01794 3.29205 3.33490 3.35450 3.40334 3.49412 3.70255 3.97626 4.05495 4.30906 4.45074 4.50812 4.65618 4.75633 4.88866 5.00358 5.11353 5.18537 5.25750 5.30750 5.44762 5.79909 5.85564 5.93553 6.14287 6.20648 6.31550 6.68487 6.74002 6.80278 6.96451 7.50036 7.57335 7.86795 8.09088 8.26475 8.68629 8.91505 9.50610 10.99929 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.002375 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.104553 B =11788.704779 C =12680.838863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.137 3.863 11 N -0.728 5.728 12 C 0.694 3.306 13 O -0.574 6.574 14 N -0.691 5.691 15 C 0.168 3.832 16 C -0.105 4.105 17 C -0.095 4.095 18 C -0.073 4.073 19 C -0.608 4.608 20 C -0.002 4.002 21 S 2.469 3.531 22 O -0.924 6.924 23 O -0.928 6.928 24 C -0.576 4.576 25 C -0.084 4.084 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.409 0.591 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.104 0.896 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -29.336 -0.428 29.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.024 4.024 10 C 0.015 3.985 11 N -0.381 5.381 12 C 0.394 3.606 13 O -0.451 6.451 14 N -0.339 5.339 15 C 0.071 3.929 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.076 4.076 19 C -0.695 4.695 20 C -0.024 4.024 21 S 2.648 3.352 22 O -0.921 6.921 23 O -0.925 6.925 24 C -0.706 4.706 25 C -0.121 4.121 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.230 0.770 32 H 0.245 0.755 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.122 0.878 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.063 -28.540 0.282 28.987 hybrid contribution -1.302 0.571 -0.890 1.677 sum 3.760 -27.969 -0.608 28.227 Atomic orbital electron populations 1.69949 1.06114 1.26932 1.50358 1.24993 0.94905 0.99467 0.94923 0.86491 0.79868 0.82874 0.78214 1.20548 1.21168 1.19656 1.21038 0.93319 0.90259 1.51418 0.92130 1.19333 0.94212 0.91007 0.97886 1.21725 0.95782 0.79915 1.01118 1.45592 1.10130 1.05123 1.77289 1.16116 0.85795 0.80357 0.78354 1.90961 1.11305 1.86049 1.56792 1.42729 1.10241 1.03403 1.77503 1.17508 0.94076 0.85306 0.96046 1.20884 1.01225 0.92056 0.98452 1.20625 0.94309 0.97631 0.98895 1.20396 0.96679 0.92884 0.97631 1.30245 1.22871 0.99265 1.17124 1.20295 0.92698 0.95877 0.93521 1.06655 0.75250 0.77823 0.75425 1.93644 1.60107 1.55209 1.83168 1.93640 1.82256 1.86334 1.30266 1.30343 1.03905 1.21745 1.14591 1.20604 0.90024 0.96199 1.05302 0.92824 0.95921 0.95875 0.92303 0.92369 0.77037 0.75515 0.84676 0.85090 0.83433 0.83586 0.83515 0.87756 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.87 5.61 -4.05 -0.02 2.85 16 11 N -0.73 -12.28 5.56 -65.23 -0.36 -12.64 16 12 C 0.69 11.77 8.32 -86.92 -0.72 11.05 16 13 O -0.57 -12.06 14.03 5.29 0.07 -11.99 16 14 N -0.69 -8.59 5.36 -14.23 -0.08 -8.67 16 15 C 0.17 2.12 6.29 -83.69 -0.53 1.60 16 16 C -0.11 -0.96 9.93 -39.62 -0.39 -1.36 16 17 C -0.10 -0.75 9.96 -39.24 -0.39 -1.14 16 18 C -0.07 -0.64 5.97 -103.85 -0.62 -1.26 16 19 C -0.61 -7.26 6.15 -39.69 -0.24 -7.50 16 20 C 0.00 -0.04 8.66 -39.50 -0.34 -0.38 16 21 S 2.47 25.79 6.15 -107.50 -0.66 25.13 16 22 O -0.92 -13.52 18.01 -57.36 -1.03 -14.55 16 23 O -0.93 -12.24 18.01 -57.36 -1.03 -13.27 16 24 C -0.58 -2.68 7.66 37.81 0.29 -2.39 16 25 C -0.08 -0.40 6.25 -27.11 -0.17 -0.57 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.40 5.54 8.49 -40.82 -0.35 5.19 16 32 H 0.41 3.51 8.84 -40.82 -0.36 3.14 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.15 2.50 6.41 -52.49 -0.34 2.16 16 36 H 0.15 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.15 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -38.63 346.78 -10.66 -49.29 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.81 Total: 2.41 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.70 Total: -12.08 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.30 Total: -46.53 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.99 Total: -39.81 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 25.79 SS G_CDS: -0.66 Total: 25.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.63 -10.66 -49.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273309332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.908 kcal (2) G-P(sol) polarization free energy of solvation -38.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds