Wall clock time and date at job start Tue Mar 31 2020 14:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86792 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47416 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.47043 * 29.99959 * 3 2 1 6 6 H 1.48499 * 109.47509 * 149.99804 * 3 2 1 7 7 C 1.37877 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47219 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46990 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00101 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00147 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00368 * 180.02562 * 12 11 10 15 15 C 1.39943 * 120.00177 * 185.31188 * 14 12 11 16 16 C 1.38894 * 120.50274 * 213.22483 * 15 14 12 17 17 C 1.37456 * 120.36443 * 180.52606 * 16 15 14 18 18 C 1.39900 * 121.15799 * 359.76468 * 17 16 15 19 19 C 1.38328 * 117.74236 * 359.59466 * 18 17 16 20 20 C 1.37864 * 121.56196 * 0.49315 * 19 18 17 21 21 S 1.77626 * 107.83177 * 180.71459 * 19 18 17 22 22 O 1.42095 * 105.49484 * 129.47698 * 21 19 18 23 23 O 1.42102 * 105.49201 * 259.92773 * 21 19 18 24 24 C 1.83516 * 97.21148 * 14.70089 * 21 19 18 25 25 C 1.50940 * 126.49293 * 179.31302 * 18 17 16 26 26 H 0.96999 * 120.00063 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46761 * 59.99956 * 9 7 2 28 28 H 1.09002 * 109.46862 * 300.00752 * 9 7 2 29 29 H 1.09007 * 109.47157 * 60.00492 * 10 9 7 30 30 H 1.08996 * 109.47504 * 299.99771 * 10 9 7 31 31 H 0.96998 * 120.00025 * 0.02562 * 11 10 9 32 32 H 0.97008 * 119.99510 * 5.30961 * 14 12 11 33 33 H 1.07995 * 119.81735 * 0.25217 * 16 15 14 34 34 H 1.07996 * 119.42103 * 179.78459 * 17 16 15 35 35 H 1.07999 * 119.90801 * 179.78234 * 20 19 18 36 36 H 1.08999 * 111.19705 * 93.67185 * 24 21 19 37 37 H 1.08997 * 111.20143 * 217.98277 * 24 21 19 38 38 H 1.09000 * 109.20584 * 39.46252 * 25 18 17 39 39 H 1.09001 * 109.12943 * 280.16942 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0980 -0.0003 13 8 3.4025 -6.0981 -0.0007 14 7 1.5128 -7.2653 -0.0003 15 6 2.2080 -8.4746 0.1115 16 6 1.7455 -9.6157 -0.5312 17 6 2.4248 -10.8047 -0.4107 18 6 3.5938 -10.8963 0.3523 19 6 4.0481 -9.7476 0.9748 20 6 3.3735 -8.5506 0.8619 21 16 5.5425 -10.1549 1.8444 22 8 6.4925 -9.1765 1.4454 23 8 5.1577 -10.3239 3.2018 24 6 5.8527 -11.7681 1.0263 25 6 4.4236 -12.1368 0.5778 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6044 0.8896 30 1 2.8719 -3.6044 -0.8905 31 1 0.5428 -4.9308 0.0000 32 1 0.5458 -7.2670 -0.0777 33 1 0.8449 -9.5697 -1.1254 34 1 2.0496 -11.6833 -0.9142 35 1 3.7503 -7.6708 1.3623 36 1 6.5174 -11.6544 0.1700 37 1 6.2457 -12.4992 1.7327 38 1 4.4747 -12.7075 -0.3495 39 1 3.9521 -12.7468 1.3484 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273309332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:01 Heat of formation + Delta-G solvation = -100.085744 kcal Electronic energy + Delta-G solvation = -24168.319109 eV Core-core repulsion = 20394.952586 eV Total energy + Delta-G solvation = -3773.366523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.82687 -40.17594 -38.20156 -37.21030 -36.96724 -36.38760 -34.99910 -34.35907 -32.10218 -31.62679 -29.63663 -26.83802 -25.35715 -24.66446 -23.13695 -22.52964 -21.96073 -20.34926 -19.64163 -18.85159 -18.48518 -17.72043 -17.23559 -17.05476 -16.83559 -16.53843 -16.32664 -15.95807 -15.83658 -15.37316 -15.27477 -15.00547 -14.56023 -14.29070 -14.15673 -13.81817 -13.37432 -13.28082 -13.25810 -13.14260 -13.06666 -12.96439 -12.65389 -12.55255 -12.29371 -11.87250 -11.75900 -11.59814 -11.41894 -11.35564 -11.12175 -10.62975 -10.32161 -10.15376 -9.11059 -8.26695 -6.36796 -0.91219 -0.20065 0.17251 1.39607 1.40874 1.46895 1.53834 1.68743 1.87102 2.39071 2.50038 2.65668 3.08342 3.14395 3.19764 3.40074 3.56179 3.78579 4.04453 4.15655 4.31886 4.34441 4.43305 4.45418 4.64512 4.66159 4.81072 4.82625 4.90977 4.96994 5.12078 5.17790 5.19302 5.35182 5.44394 5.55055 5.74376 5.85192 5.88389 6.13589 6.75701 6.90158 7.32393 7.36082 8.85216 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.002375 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.104553 B =11788.704779 C =12680.838863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.158 3.842 11 N -0.722 5.722 12 C 0.693 3.307 13 O -0.620 6.620 14 N -0.671 5.671 15 C 0.134 3.866 16 C -0.092 4.092 17 C -0.090 4.090 18 C -0.058 4.058 19 C -0.637 4.637 20 C -0.047 4.047 21 S 2.439 3.561 22 O -0.989 6.989 23 O -0.973 6.973 24 C -0.518 4.518 25 C -0.088 4.088 26 H 0.266 0.734 27 H 0.013 0.987 28 H 0.010 0.990 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.412 0.588 32 H 0.428 0.572 33 H 0.171 0.829 34 H 0.182 0.818 35 H 0.100 0.900 36 H 0.173 0.827 37 H 0.189 0.811 38 H 0.149 0.851 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 -33.613 -2.228 33.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.012 4.012 10 C 0.034 3.966 11 N -0.376 5.376 12 C 0.394 3.606 13 O -0.500 6.500 14 N -0.320 5.320 15 C 0.038 3.962 16 C -0.113 4.113 17 C -0.109 4.109 18 C -0.061 4.061 19 C -0.724 4.724 20 C -0.068 4.068 21 S 2.626 3.374 22 O -0.986 6.986 23 O -0.971 6.971 24 C -0.654 4.654 25 C -0.126 4.126 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.248 0.752 32 H 0.268 0.732 33 H 0.188 0.812 34 H 0.199 0.801 35 H 0.118 0.882 36 H 0.191 0.809 37 H 0.207 0.793 38 H 0.167 0.833 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.498 -32.814 -1.487 33.154 hybrid contribution -1.142 1.656 -0.358 2.043 sum 3.357 -31.157 -1.845 31.392 Atomic orbital electron populations 1.70044 1.07455 1.28053 1.50914 1.25845 0.95821 1.03026 0.94355 0.85450 0.78573 0.78482 0.78585 1.19625 1.20377 1.19311 1.21451 0.93576 0.91942 1.51698 0.92454 1.19122 0.94142 0.91374 0.96590 1.21168 0.94792 0.80818 0.99850 1.45199 1.10675 1.04069 1.77694 1.16213 0.85260 0.81276 0.77882 1.90940 1.13579 1.86849 1.58656 1.42362 1.11005 1.02155 1.76520 1.17787 0.94375 0.86195 0.97859 1.21337 1.01968 0.90889 0.97080 1.21245 0.93284 0.98580 0.97741 1.21076 0.96867 0.92955 0.95196 1.30282 1.23768 0.99850 1.18468 1.20138 0.94979 0.95810 0.95913 1.07347 0.74323 0.80468 0.75285 1.93555 1.61398 1.59978 1.83668 1.93566 1.82537 1.87630 1.33324 1.30209 1.05345 1.14840 1.14969 1.20939 0.88732 0.94451 1.08461 0.92471 0.96894 0.97160 0.93853 0.93461 0.75217 0.73229 0.81151 0.80051 0.88210 0.80933 0.79300 0.83290 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.88 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.28 5.09 29.85 0.15 1.44 16 10 C 0.16 7.02 5.61 86.38 0.48 7.50 16 11 N -0.72 -25.66 5.56 -478.54 -2.66 -28.32 16 12 C 0.69 25.14 8.32 179.05 1.49 26.63 16 13 O -0.62 -28.53 14.03 -4.00 -0.06 -28.58 16 14 N -0.67 -17.26 5.36 -317.18 -1.70 -18.96 16 15 C 0.13 3.46 6.29 38.14 0.24 3.70 16 16 C -0.09 -1.42 9.93 22.24 0.22 -1.20 16 17 C -0.09 -0.98 9.96 22.49 0.22 -0.76 16 18 C -0.06 -0.81 5.97 -19.36 -0.12 -0.92 16 19 C -0.64 -15.67 6.15 22.20 0.14 -15.54 16 20 C -0.05 -1.50 8.66 22.32 0.19 -1.31 16 21 S 2.44 53.41 6.15 -56.49 -0.35 53.07 16 22 O -0.99 -32.29 18.01 -127.82 -2.30 -34.59 16 23 O -0.97 -27.66 18.01 -127.82 -2.30 -29.96 16 24 C -0.52 -2.29 7.66 72.41 0.55 -1.73 16 25 C -0.09 -0.28 6.25 30.35 0.19 -0.09 16 26 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.04 2.04 8.14 -2.38 -0.02 2.03 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.41 11.89 8.49 -92.71 -0.79 11.10 16 32 H 0.43 7.15 8.84 -92.70 -0.82 6.33 16 33 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 35 H 0.10 4.03 6.41 -2.91 -0.02 4.01 16 36 H 0.17 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.19 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -94.33 346.78 -3.09 -97.43 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -0.50 Total: 9.96 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.46 Total: -12.23 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -4.08 Total: -101.41 kcal Atomic # 8 Polarization: -88.48 SS G_CDS: -4.66 Total: -93.14 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 53.41 SS G_CDS: -0.35 Total: 53.07 kcal Total: -94.33 -3.09 -97.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273309332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.660 kcal (2) G-P(sol) polarization free energy of solvation -94.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds