Wall clock time and date at job start Tue Mar 31 2020 14:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 H 1.08993 * 109.18881 * 327.12651 * 15 14 12 17 17 C 1.54253 * 109.19762 * 207.87648 * 15 14 12 18 18 S 1.83516 * 100.56074 * 267.03434 * 17 15 14 19 19 O 1.42099 * 111.53707 * 225.98974 * 18 17 15 20 20 O 1.42102 * 111.54147 * 85.66310 * 18 17 15 21 21 C 1.77612 * 97.19276 * 335.82460 * 18 17 15 22 22 C 1.37969 * 130.66729 * 195.07623 * 21 18 17 23 23 C 1.38208 * 120.22817 * 179.57706 * 22 21 18 24 24 C 1.38255 * 119.13098 * 359.97438 * 23 22 21 25 25 C 1.37589 * 120.45134 * 0.13423 * 24 23 22 26 26 C 1.38263 * 107.83107 * 14.95195 * 21 18 17 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 29 29 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 32 32 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 33 33 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 34 34 H 1.09003 * 111.19226 * 24.86342 * 17 15 14 35 35 H 1.08999 * 111.19704 * 149.19899 * 17 15 14 36 36 H 1.07997 * 119.88256 * 359.54791 * 22 21 18 37 37 H 1.08000 * 120.43245 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.77289 * 180.17036 * 24 23 22 39 39 H 1.07996 * 119.47527 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.4027 -6.0980 0.0023 14 7 1.5129 -7.2652 0.0018 15 6 2.2455 -8.5339 0.0019 16 1 3.1733 -8.4118 -0.5567 17 6 1.3840 -9.6171 -0.6791 18 16 0.5342 -10.3373 0.7793 19 8 0.5574 -11.7577 0.7479 20 8 -0.6398 -9.6088 1.1114 21 6 1.7425 -9.8697 1.9941 22 6 1.9269 -10.3014 3.2915 23 6 2.9592 -9.7900 4.0550 24 6 3.8011 -8.8436 3.5010 25 6 3.6124 -8.4141 2.2076 26 6 2.5698 -8.9195 1.4245 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5568 0.8902 30 1 2.8720 -3.6043 -0.8894 31 1 2.8720 -3.6043 0.8905 32 1 0.5429 -4.9308 0.0011 33 1 0.5429 -7.2652 0.0010 34 1 0.6694 -9.1739 -1.3727 35 1 2.0066 -10.3593 -1.1789 36 1 1.2619 -11.0412 3.7120 37 1 3.1062 -10.1253 5.0710 38 1 4.6128 -8.4390 4.0874 39 1 4.2792 -7.6739 1.7908 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273922277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:48 Heat of formation + Delta-G solvation = -94.282681 kcal Electronic energy + Delta-G solvation = -24727.262900 eV Core-core repulsion = 20954.148017 eV Total energy + Delta-G solvation = -3773.114883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51504 -40.20856 -38.29286 -37.37380 -37.03518 -36.34975 -34.84739 -33.35317 -32.05625 -31.27933 -30.44165 -26.81058 -25.26937 -24.20986 -23.23090 -22.50021 -21.93821 -20.20573 -19.61162 -18.64840 -18.43945 -17.81357 -17.52696 -16.88555 -16.78127 -16.49495 -16.42068 -15.97311 -15.64091 -15.44241 -15.21531 -15.04616 -14.31958 -14.29204 -14.10178 -13.90457 -13.64114 -13.36282 -13.27737 -13.19966 -13.18782 -12.95576 -12.56602 -12.50169 -12.24611 -11.85536 -11.68369 -11.50878 -11.39568 -11.23948 -10.61451 -10.54303 -10.39869 -9.99737 -9.84539 -8.23555 -6.33752 -1.04087 -0.25944 0.15888 1.41501 1.42418 1.51604 1.55579 1.65990 2.08393 2.38249 2.40954 2.51424 2.84367 3.11594 3.19293 3.35367 3.44109 3.70088 4.01884 4.07815 4.23522 4.30065 4.40293 4.48484 4.53523 4.59850 4.70505 4.82467 4.87760 5.03470 5.20591 5.21375 5.30904 5.35963 5.50582 5.60353 5.77524 5.80192 5.91211 6.17221 6.80111 7.00475 7.35730 7.50637 8.88543 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.002699 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.358850 B =10372.240347 C =10949.522360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.162 3.838 11 N -0.733 5.733 12 C 0.704 3.296 13 O -0.621 6.621 14 N -0.734 5.734 15 C 0.191 3.809 16 H 0.129 0.871 17 C -0.550 4.550 18 S 2.478 3.522 19 O -0.956 6.956 20 O -0.954 6.954 21 C -0.635 4.635 22 C -0.025 4.025 23 C -0.125 4.125 24 C -0.081 4.081 25 C -0.114 4.114 26 C -0.067 4.067 27 H 0.265 0.735 28 H 0.009 0.991 29 H 0.006 0.994 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.407 0.593 33 H 0.413 0.587 34 H 0.188 0.812 35 H 0.199 0.801 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.152 0.848 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 -24.625 2.371 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.038 3.962 11 N -0.387 5.387 12 C 0.404 3.596 13 O -0.502 6.502 14 N -0.392 5.392 15 C 0.084 3.916 16 H 0.147 0.853 17 C -0.683 4.683 18 S 2.661 3.339 19 O -0.954 6.954 20 O -0.951 6.951 21 C -0.722 4.722 22 C -0.043 4.043 23 C -0.144 4.144 24 C -0.099 4.099 25 C -0.134 4.134 26 C -0.070 4.070 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.242 0.758 33 H 0.251 0.749 34 H 0.206 0.794 35 H 0.217 0.783 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.387 -24.974 2.480 25.325 hybrid contribution 0.227 1.729 0.213 1.756 sum 3.614 -23.246 2.692 23.679 Atomic orbital electron populations 1.70065 1.07564 1.27902 1.51145 1.25871 0.95771 1.03107 0.94491 0.85401 0.79042 0.78812 0.77817 1.18824 1.20263 1.20397 1.21492 0.93628 0.91830 1.51289 0.92160 1.19144 0.94316 0.91807 0.96318 1.21084 0.94505 0.80783 0.99841 1.45278 1.10560 1.04531 1.78380 1.16024 0.85282 0.80890 0.77363 1.90858 1.12885 1.87003 1.59462 1.45192 1.10295 1.03182 1.80519 1.19816 0.98563 0.82265 0.90922 0.85298 1.30697 1.13166 1.08983 1.15460 1.06297 0.74655 0.74386 0.78565 1.93573 1.87026 1.28365 1.86387 1.93624 1.45013 1.73950 1.82551 1.30568 1.18917 1.11206 1.11462 1.20664 0.96475 0.96497 0.90704 1.21783 0.94550 0.96610 1.01438 1.21588 0.98991 0.95036 0.94296 1.21306 0.97564 0.99505 0.94998 1.20938 0.95287 0.94885 0.95921 0.92593 0.97230 0.97562 0.93289 0.93749 0.75796 0.74918 0.79448 0.78326 0.83271 0.81625 0.83051 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -29.99 9.11 25.60 0.23 -29.76 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.08 5.09 29.85 0.15 1.23 16 10 C 0.16 6.77 5.61 86.38 0.48 7.25 16 11 N -0.73 -24.57 5.56 -478.52 -2.66 -27.23 16 12 C 0.70 22.13 8.54 179.05 1.53 23.66 16 13 O -0.62 -23.40 15.18 -4.00 -0.06 -23.46 16 14 N -0.73 -16.11 4.98 -459.02 -2.29 -18.40 16 15 C 0.19 3.38 2.87 44.74 0.13 3.51 16 16 H 0.13 2.37 7.49 -2.39 -0.02 2.36 16 17 C -0.55 -4.78 7.21 72.41 0.52 -4.26 16 18 S 2.48 40.93 6.15 -56.49 -0.35 40.58 16 19 O -0.96 -20.49 18.01 -127.82 -2.30 -22.79 16 20 O -0.95 -21.77 18.01 -127.82 -2.30 -24.08 16 21 C -0.63 -12.51 6.16 22.21 0.14 -12.37 16 22 C -0.02 -0.45 10.02 22.20 0.22 -0.22 16 23 C -0.13 -1.98 10.10 22.27 0.22 -1.76 16 24 C -0.08 -1.49 9.99 22.12 0.22 -1.27 16 25 C -0.11 -2.63 9.94 22.50 0.22 -2.41 16 26 C -0.07 -1.42 5.51 -19.40 -0.11 -1.52 16 27 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.41 11.80 8.49 -92.71 -0.79 11.01 16 33 H 0.41 7.23 8.62 -92.71 -0.80 6.43 16 34 H 0.19 0.63 8.04 -2.39 -0.02 0.61 16 35 H 0.20 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.12 3.19 7.30 -2.91 -0.02 3.17 16 Total: -1.00 -79.69 348.51 -3.70 -83.40 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.48 Total: 17.63 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 4.43 Total: -17.11 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -4.66 Total: -99.43 kcal Atomic # 8 Polarization: -65.66 SS G_CDS: -4.67 Total: -70.32 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.35 Total: 40.58 kcal Total: -79.69 -3.70 -83.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273922277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.888 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds