Wall clock time and date at job start Tue Mar 31 2020 14:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00061 * 2 1 4 4 H 1.48504 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47058 * 300.00032 * 3 2 1 6 6 H 1.48504 * 109.47431 * 59.99997 * 3 2 1 7 7 C 1.37886 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99332 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46451 * 180.02562 * 9 7 2 11 11 N 1.46510 * 109.46913 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99912 * 179.97438 * 11 10 9 13 13 O 1.21591 * 120.00069 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00014 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00385 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.11913 * 35.68852 * 15 14 12 17 17 C 1.54257 * 109.21185 * 154.99807 * 15 14 12 18 18 S 1.83520 * 100.55034 * 147.94541 * 17 15 14 19 19 O 1.42104 * 111.54121 * 226.02818 * 18 17 15 20 20 O 1.42101 * 111.53703 * 85.70850 * 18 17 15 21 21 C 1.77618 * 97.20580 * 335.87060 * 18 17 15 22 22 C 1.37971 * 130.66550 * 194.94393 * 21 18 17 23 23 C 1.38207 * 120.22661 * 179.53101 * 22 21 18 24 24 C 1.38250 * 119.13419 * 0.11507 * 23 22 21 25 25 C 1.37596 * 120.44709 * 359.64104 * 24 23 22 26 26 C 1.38260 * 107.83547 * 14.69337 * 21 18 17 27 27 H 0.96997 * 120.00334 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47190 * 60.00304 * 9 7 2 29 29 H 1.08999 * 109.47148 * 299.99840 * 9 7 2 30 30 H 1.08991 * 109.47549 * 60.00025 * 10 9 7 31 31 H 1.08999 * 109.47277 * 299.99716 * 10 9 7 32 32 H 0.96997 * 119.99926 * 359.97438 * 11 10 9 33 33 H 0.97006 * 119.99734 * 359.97438 * 14 12 11 34 34 H 1.09006 * 111.19763 * 30.12828 * 17 15 14 35 35 H 1.08997 * 111.23861 * 265.78753 * 17 15 14 36 36 H 1.08007 * 119.88719 * 359.51146 * 22 21 18 37 37 H 1.08002 * 120.42970 * 179.83122 * 23 22 21 38 38 H 1.07998 * 119.78035 * 179.97438 * 24 23 22 39 39 H 1.08007 * 119.47292 * 180.35984 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5126 -4.9309 0.0012 12 6 2.1865 -6.0980 0.0016 13 8 3.4024 -6.0980 0.0030 14 7 1.5127 -7.2652 0.0016 15 6 2.2451 -8.5340 0.0026 16 1 3.1476 -8.4247 0.6040 17 6 1.3551 -9.6334 0.6180 18 16 1.9284 -11.0981 -0.3274 19 8 0.8360 -11.8765 -0.7967 20 8 3.0743 -11.6889 0.2702 21 6 2.5330 -10.2227 -1.7496 22 6 2.8710 -10.6764 -3.0080 23 6 3.3168 -9.7904 -3.9705 24 6 3.4208 -8.4487 -3.6539 25 6 3.0779 -7.9998 -2.3992 26 6 2.6315 -8.8852 -1.4133 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8711 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8877 32 1 0.5427 -4.9309 0.0005 33 1 0.5426 -7.2652 0.0016 34 1 0.2992 -9.4344 0.4344 35 1 1.5520 -9.7502 1.6837 36 1 2.7871 -11.7276 -3.2416 37 1 3.5848 -10.1424 -4.9558 38 1 3.7684 -7.7474 -4.3979 39 1 3.1597 -6.9474 -2.1706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273922281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:53 Heat of formation + Delta-G solvation = -65.384344 kcal Electronic energy + Delta-G solvation = -24588.077148 eV Core-core repulsion = 20816.215391 eV Total energy + Delta-G solvation = -3771.861757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.55505 -39.18880 -37.49141 -36.46156 -36.16367 -34.84210 -33.07962 -32.35273 -31.18440 -30.07891 -29.28837 -25.18665 -24.21860 -23.42959 -21.99548 -21.06410 -20.79151 -19.46772 -18.43453 -17.78925 -17.05461 -16.79170 -16.39066 -16.06319 -15.73001 -15.26483 -15.18751 -14.79238 -14.56812 -14.32478 -14.10605 -13.78569 -13.49952 -13.40684 -13.02317 -12.65085 -12.50667 -12.44237 -12.37091 -12.34334 -11.82201 -11.28625 -11.26015 -11.10711 -10.74532 -10.67332 -10.42468 -10.14942 -9.67097 -9.62867 -9.43550 -9.32150 -9.13516 -8.59995 -8.40767 -6.15248 -4.18140 -0.38518 0.52233 0.96666 2.21802 2.75066 3.07430 3.24432 3.25585 3.29589 3.32508 3.37430 3.50039 3.93118 4.06561 4.31010 4.41477 4.50995 4.58544 4.71280 4.89218 4.98975 5.10516 5.18399 5.22249 5.40069 5.56920 5.82019 5.94168 6.11198 6.14705 6.22659 6.28333 6.54350 6.66571 6.82161 6.98325 7.47691 7.54519 7.83414 8.13107 8.25350 8.73484 8.88406 9.47140 10.96394 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002524 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.070969 B =11093.020166 C =11702.690809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.734 5.734 12 C 0.697 3.303 13 O -0.590 6.590 14 N -0.741 5.741 15 C 0.204 3.796 16 H 0.128 0.872 17 C -0.586 4.586 18 S 2.478 3.522 19 O -0.928 6.928 20 O -0.921 6.921 21 C -0.628 4.628 22 C -0.007 4.007 23 C -0.131 4.131 24 C -0.073 4.073 25 C -0.092 4.092 26 C -0.053 4.053 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.395 0.605 33 H 0.401 0.599 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 -22.536 -3.471 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.387 5.387 12 C 0.397 3.603 13 O -0.469 6.469 14 N -0.398 5.398 15 C 0.096 3.904 16 H 0.146 0.854 17 C -0.716 4.716 18 S 2.658 3.342 19 O -0.925 6.925 20 O -0.918 6.918 21 C -0.716 4.716 22 C -0.026 4.026 23 C -0.150 4.150 24 C -0.091 4.091 25 C -0.111 4.111 26 C -0.056 4.056 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.228 0.772 33 H 0.236 0.764 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.647 -23.307 -3.254 23.591 hybrid contribution -0.468 2.052 -0.342 2.132 sum 1.178 -21.256 -3.596 21.590 Atomic orbital electron populations 1.69956 1.06108 1.26839 1.50366 1.24998 0.94896 0.99462 0.94940 0.86455 0.80175 0.83276 0.77645 1.19551 1.20927 1.20911 1.21072 0.93297 0.90292 1.51362 0.92151 1.19331 0.94232 0.91065 0.97849 1.21651 0.95686 0.80181 1.00807 1.45574 1.10047 1.05193 1.77894 1.16090 0.85773 0.80448 0.77973 1.90930 1.11442 1.86442 1.58043 1.45123 1.09454 1.03404 1.81822 1.19775 0.96111 0.83120 0.91407 0.85423 1.30798 1.10366 1.16303 1.14109 1.06296 0.75595 0.75929 0.76385 1.93619 1.54250 1.65877 1.78785 1.93665 1.48261 1.73298 1.76623 1.30280 1.18104 1.08092 1.15103 1.20203 0.92605 0.99790 0.89981 1.21385 1.00313 0.93570 0.99720 1.21299 0.95400 0.96089 0.96289 1.21188 0.96969 1.00777 0.92122 1.20925 0.96405 0.92877 0.95391 0.92860 0.95955 0.95946 0.92566 0.92648 0.77174 0.76407 0.82791 0.82418 0.85020 0.84669 0.84930 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.03 9.11 -34.44 -0.31 -14.35 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.78 5.61 -4.04 -0.02 2.76 16 11 N -0.73 -11.59 5.56 -65.22 -0.36 -11.95 16 12 C 0.70 10.57 7.36 -86.92 -0.64 9.93 16 13 O -0.59 -11.09 14.81 5.29 0.08 -11.01 16 14 N -0.74 -7.78 4.96 -59.06 -0.29 -8.07 16 15 C 0.20 1.98 2.87 -68.32 -0.20 1.78 16 16 H 0.13 1.37 7.58 -51.93 -0.39 0.97 16 17 C -0.59 -3.38 7.27 37.82 0.28 -3.10 16 18 S 2.48 21.42 6.15 -107.50 -0.66 20.76 16 19 O -0.93 -10.24 18.01 -57.36 -1.03 -11.27 16 20 O -0.92 -10.76 18.01 -57.36 -1.03 -11.80 16 21 C -0.63 -6.42 6.16 -39.67 -0.24 -6.66 16 22 C -0.01 -0.06 10.02 -39.69 -0.40 -0.46 16 23 C -0.13 -1.16 10.10 -39.59 -0.40 -1.56 16 24 C -0.07 -0.74 9.99 -39.81 -0.40 -1.13 16 25 C -0.09 -1.12 9.38 -39.22 -0.37 -1.48 16 26 C -0.05 -0.59 5.69 -103.91 -0.59 -1.18 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.39 5.27 8.49 -40.82 -0.35 4.93 16 33 H 0.40 2.97 8.39 -40.82 -0.34 2.63 16 34 H 0.15 0.51 7.81 -51.93 -0.41 0.11 16 35 H 0.16 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.91 5.91 -52.48 -0.31 1.60 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -36.72 344.87 -10.65 -47.37 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.72 Total: 3.43 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.54 Total: -13.78 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.08 Total: -44.80 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.99 Total: -34.08 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 21.42 SS G_CDS: -0.66 Total: 20.76 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.72 -10.65 -47.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273922281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.017 kcal (2) G-P(sol) polarization free energy of solvation -36.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds