Wall clock time and date at job start Tue Mar 31 2020 14:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00061 * 2 1 4 4 H 1.48504 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47058 * 300.00032 * 3 2 1 6 6 H 1.48504 * 109.47431 * 59.99997 * 3 2 1 7 7 C 1.37886 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99332 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46451 * 180.02562 * 9 7 2 11 11 N 1.46510 * 109.46913 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99912 * 179.97438 * 11 10 9 13 13 O 1.21591 * 120.00069 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00014 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00385 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.11913 * 35.68852 * 15 14 12 17 17 C 1.54257 * 109.21185 * 154.99807 * 15 14 12 18 18 S 1.83520 * 100.55034 * 147.94541 * 17 15 14 19 19 O 1.42104 * 111.54121 * 226.02818 * 18 17 15 20 20 O 1.42101 * 111.53703 * 85.70850 * 18 17 15 21 21 C 1.77618 * 97.20580 * 335.87060 * 18 17 15 22 22 C 1.37971 * 130.66550 * 194.94393 * 21 18 17 23 23 C 1.38207 * 120.22661 * 179.53101 * 22 21 18 24 24 C 1.38250 * 119.13419 * 0.11507 * 23 22 21 25 25 C 1.37596 * 120.44709 * 359.64104 * 24 23 22 26 26 C 1.38260 * 107.83547 * 14.69337 * 21 18 17 27 27 H 0.96997 * 120.00334 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47190 * 60.00304 * 9 7 2 29 29 H 1.08999 * 109.47148 * 299.99840 * 9 7 2 30 30 H 1.08991 * 109.47549 * 60.00025 * 10 9 7 31 31 H 1.08999 * 109.47277 * 299.99716 * 10 9 7 32 32 H 0.96997 * 119.99926 * 359.97438 * 11 10 9 33 33 H 0.97006 * 119.99734 * 359.97438 * 14 12 11 34 34 H 1.09006 * 111.19763 * 30.12828 * 17 15 14 35 35 H 1.08997 * 111.23861 * 265.78753 * 17 15 14 36 36 H 1.08007 * 119.88719 * 359.51146 * 22 21 18 37 37 H 1.08002 * 120.42970 * 179.83122 * 23 22 21 38 38 H 1.07998 * 119.78035 * 179.97438 * 24 23 22 39 39 H 1.08007 * 119.47292 * 180.35984 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5126 -4.9309 0.0012 12 6 2.1865 -6.0980 0.0016 13 8 3.4024 -6.0980 0.0030 14 7 1.5127 -7.2652 0.0016 15 6 2.2451 -8.5340 0.0026 16 1 3.1476 -8.4247 0.6040 17 6 1.3551 -9.6334 0.6180 18 16 1.9284 -11.0981 -0.3274 19 8 0.8360 -11.8765 -0.7967 20 8 3.0743 -11.6889 0.2702 21 6 2.5330 -10.2227 -1.7496 22 6 2.8710 -10.6764 -3.0080 23 6 3.3168 -9.7904 -3.9705 24 6 3.4208 -8.4487 -3.6539 25 6 3.0779 -7.9998 -2.3992 26 6 2.6315 -8.8852 -1.4133 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8711 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8877 32 1 0.5427 -4.9309 0.0005 33 1 0.5426 -7.2652 0.0016 34 1 0.2992 -9.4344 0.4344 35 1 1.5520 -9.7502 1.6837 36 1 2.7871 -11.7276 -3.2416 37 1 3.5848 -10.1424 -4.9558 38 1 3.7684 -7.7474 -4.3979 39 1 3.1597 -6.9474 -2.1706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273922281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:52 Heat of formation + Delta-G solvation = -94.549537 kcal Electronic energy + Delta-G solvation = -24589.341846 eV Core-core repulsion = 20816.215391 eV Total energy + Delta-G solvation = -3773.126455 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55584 -40.17777 -38.27669 -37.37655 -37.03849 -36.35596 -34.85574 -33.46450 -32.02224 -31.26964 -30.47739 -26.82655 -25.23114 -24.18997 -23.23679 -22.49940 -21.91186 -20.23697 -19.60785 -18.61275 -18.45918 -17.80966 -17.54808 -16.89897 -16.72788 -16.50488 -16.40440 -16.00331 -15.66439 -15.42374 -15.19061 -15.10704 -14.53264 -14.30626 -14.23433 -13.90565 -13.43098 -13.30999 -13.22131 -13.20036 -13.10686 -12.94619 -12.57907 -12.51140 -12.24431 -12.01293 -11.68069 -11.55076 -11.46255 -11.20557 -10.61297 -10.51178 -10.40900 -9.93332 -9.85094 -8.24256 -6.33920 -1.05553 -0.24380 0.16905 1.40906 1.41938 1.45939 1.55152 1.74466 2.08508 2.37253 2.41113 2.50077 2.83433 3.11114 3.24712 3.29282 3.43822 3.73051 3.92754 4.01390 4.21913 4.35428 4.41163 4.49553 4.52459 4.53632 4.69224 4.81369 4.88091 5.00232 5.17568 5.26223 5.31893 5.37577 5.51024 5.60697 5.78787 5.79384 5.96950 6.17437 6.79904 7.06164 7.35576 7.53079 8.87717 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002524 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.070969 B =11093.020166 C =11702.690809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.730 5.730 12 C 0.700 3.300 13 O -0.627 6.627 14 N -0.719 5.719 15 C 0.196 3.804 16 H 0.118 0.882 17 C -0.556 4.556 18 S 2.497 3.503 19 O -0.952 6.952 20 O -0.955 6.955 21 C -0.639 4.639 22 C -0.020 4.020 23 C -0.127 4.127 24 C -0.081 4.081 25 C -0.119 4.119 26 C -0.066 4.066 27 H 0.265 0.735 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.408 0.592 33 H 0.419 0.581 34 H 0.189 0.811 35 H 0.192 0.808 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.147 0.853 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -23.362 -3.402 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.037 3.963 11 N -0.385 5.385 12 C 0.400 3.600 13 O -0.508 6.508 14 N -0.377 5.377 15 C 0.089 3.911 16 H 0.135 0.865 17 C -0.688 4.688 18 S 2.679 3.321 19 O -0.949 6.949 20 O -0.952 6.952 21 C -0.725 4.725 22 C -0.039 4.039 23 C -0.146 4.146 24 C -0.099 4.099 25 C -0.138 4.138 26 C -0.068 4.068 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.244 0.756 33 H 0.258 0.742 34 H 0.206 0.794 35 H 0.210 0.790 36 H 0.172 0.828 37 H 0.184 0.816 38 H 0.165 0.835 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.128 -24.201 -3.208 24.439 hybrid contribution -0.327 2.267 -0.397 2.325 sum 0.802 -21.934 -3.605 22.243 Atomic orbital electron populations 1.70051 1.07475 1.27894 1.51152 1.25836 0.95765 1.02989 0.94509 0.85433 0.79026 0.78968 0.77843 1.18981 1.20332 1.20295 1.21497 0.93593 0.91940 1.51276 0.92334 1.19127 0.94252 0.91626 0.96396 1.21076 0.94549 0.80955 0.99733 1.45213 1.10540 1.04306 1.78402 1.16119 0.85272 0.81131 0.77507 1.90908 1.13321 1.87071 1.59539 1.44869 1.10330 1.02285 1.80234 1.19961 0.96659 0.83478 0.91046 0.86477 1.30777 1.11460 1.11440 1.15086 1.05688 0.74446 0.76223 0.75712 1.93586 1.54542 1.67454 1.79324 1.93623 1.49756 1.74932 1.76939 1.30560 1.18130 1.07808 1.16038 1.20686 0.92028 1.01210 0.89985 1.21755 0.99072 0.92751 1.00985 1.21550 0.95153 0.97265 0.95928 1.21179 0.99064 0.99859 0.93712 1.21032 0.96842 0.93199 0.95767 0.92579 0.97299 0.97224 0.93655 0.93753 0.75605 0.74236 0.79386 0.79037 0.82848 0.81553 0.83541 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.09 13.29 21.45 0.28 -52.81 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.16 6.55 5.61 86.38 0.48 7.03 16 11 N -0.73 -22.88 5.56 -478.53 -2.66 -25.54 16 12 C 0.70 20.95 7.36 179.06 1.32 22.27 16 13 O -0.63 -23.93 14.81 -4.00 -0.06 -23.99 16 14 N -0.72 -13.95 4.96 -459.02 -2.28 -16.22 16 15 C 0.20 3.50 2.87 44.74 0.13 3.63 16 16 H 0.12 2.41 7.58 -2.38 -0.02 2.40 16 17 C -0.56 -4.58 7.27 72.41 0.53 -4.05 16 18 S 2.50 39.12 6.15 -56.49 -0.35 38.77 16 19 O -0.95 -19.40 18.01 -127.82 -2.30 -21.70 16 20 O -0.96 -21.47 18.01 -127.82 -2.30 -23.77 16 21 C -0.64 -12.39 6.16 22.21 0.14 -12.26 16 22 C -0.02 -0.36 10.02 22.20 0.22 -0.14 16 23 C -0.13 -2.06 10.10 22.27 0.22 -1.83 16 24 C -0.08 -1.61 9.99 22.12 0.22 -1.39 16 25 C -0.12 -2.95 9.38 22.50 0.21 -2.74 16 26 C -0.07 -1.42 5.69 -19.41 -0.11 -1.53 16 27 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.41 10.56 8.49 -92.71 -0.79 9.77 16 33 H 0.42 5.06 8.39 -92.70 -0.78 4.28 16 34 H 0.19 0.36 7.81 -2.38 -0.02 0.34 16 35 H 0.19 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.11 3.27 5.91 -2.91 -0.02 3.25 16 Total: -1.00 -80.69 344.87 -3.88 -84.58 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -0.46 Total: 14.06 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 4.21 Total: -18.19 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -4.65 Total: -94.57 kcal Atomic # 8 Polarization: -64.80 SS G_CDS: -4.66 Total: -69.47 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 39.12 SS G_CDS: -0.35 Total: 38.77 kcal Total: -80.69 -3.88 -84.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273922281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.973 kcal (2) G-P(sol) polarization free energy of solvation -80.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds